[med-svn] r11434 - in trunk/packages/biomaj/tags: . 1.2.0-6/debian
Olivier Sallou
osallou at alioth.debian.org
Fri Jun 22 10:40:41 UTC 2012
Author: osallou
Date: 2012-06-22 10:40:41 +0000 (Fri, 22 Jun 2012)
New Revision: 11434
Added:
trunk/packages/biomaj/tags/1.2.0-6/
trunk/packages/biomaj/tags/1.2.0-6/debian/changelog
trunk/packages/biomaj/tags/1.2.0-6/debian/control
trunk/packages/biomaj/tags/1.2.0-6/debian/postrm
Removed:
trunk/packages/biomaj/tags/1.2.0-6/debian/changelog
trunk/packages/biomaj/tags/1.2.0-6/debian/control
trunk/packages/biomaj/tags/1.2.0-6/debian/postrm
Log:
[svn-buildpackage] Tagging biomaj 1.2.0-6
Deleted: trunk/packages/biomaj/tags/1.2.0-6/debian/changelog
===================================================================
--- trunk/packages/biomaj/trunk/debian/changelog 2012-06-21 19:43:37 UTC (rev 11428)
+++ trunk/packages/biomaj/tags/1.2.0-6/debian/changelog 2012-06-22 10:40:41 UTC (rev 11434)
@@ -1,102 +0,0 @@
-biomaj (1.2.0-6) UNRELEASED; urgency=low
-
- [ Andreas Tille ]
- * debian/upstream: Enhance upstream information (authors format, missing
- fields)
-
- [Debconf translation updates]
- * French (Olivier Sallou, proofread by the French l10n team).
-
- -- Andreas Tille <tille at debian.org> Tue, 08 May 2012 22:46:34 +0200
-
-biomaj (1.2.0-5) unstable; urgency=low
-
- * Add missing file to package to get the console help (Closes: #658833)
- - biomaj.install
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 01 Feb 2012 10:00:03 +0100
-
-biomaj (1.2.0-4) unstable; urgency=low
-
- * [Olivier Sallou]
- * config: remove biomaj/jdk_home, not needed anymore
-
- * Debconf templates and debian/control reviewed by the debian-l10n-
- english team as part of the Smith review project. Closes: #653408
- * [Debconf translation updates]
- * Russian (Yuri Kozlov). Closes: #656111
- * Italian (Francesca Ciceri). Closes: #656254
- * French (Olivier Sallou). Closes: #656066
- * Czech (Michal Simunek). Closes: #656670
- * Dutch; (Jeroen Schot). Closes: #657009
- * German (Chris Leick). Closes: #657024
- * Danish (Joe Hansen). Closes: #657341
- * Indonesian (Mahyuddin Susanto). Closes: #657463
- * Spanish; (Camaleón). Closes: #657491
- * Polish (Michał Kułach). Closes: #657512
- * Swedish (Martin Bagge / brother). Closes: #657548
- * Portuguese (Miguel Figueiredo). Closes: #657664
-
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 16 Dec 2011 15:53:10 +0100
-
-biomaj (1.2.0-3) unstable; urgency=low
-
- * Add Portuguese translation for debconf (Closes: #651680)
- - Thanks to Pedro Ribeiro <p.m42.ribeiro at gmail.com>
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 16 Dec 2011 09:25:22 +0100
-
-biomaj (1.2.0-2) unstable; urgency=low
-
- * Fix Mysql dependency name.
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 11 Nov 2011 10:25:39 +0100
-
-biomaj (1.2.0-1) unstable; urgency=low
-
- * New upstream release with new features and bug fixes.
- * Change in database model, migration script ran at install
- * New post processes added in default install (emboss)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Thu, 18 Aug 2011 09:55:23 +0200
-
-biomaj (1.1.0-3) unstable; urgency=low
-
- * Change priority in debconf message for jdk home
- * Add spanish translation of debconf:
- Thanks to Camaleón <noelamac at gmail.com>
- Closes: #632952
- * Add sweden translation of debconf:
- Thanks to Martin Bagge <brother at bsnet.se>
- Closes: #628927
- * Add german translation of debconf:
- Thanks to Chris Leick <c.leick at vollbio.de>
- Closes: #629455
- * Change openjdk dependency to add default-jdk and sun jdk possible depends
- Closes: #633523
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Thu, 11 Jul 2011 09:55:23 +0200
-
-biomaj (1.1.0-2) unstable; urgency=low
-
- * Add russian translation of debconf:
- Thanks to Yuri Kozlov <yuray at komyakino.ru>
- Closes: #623807
- * debian/patches/fix623558_remove_pid:
- Remove unnecessary pid file creation
- Closes: #623558
- * debian/postrm,debian/preinst:
- Issue for smooth upgrade, require old package
- removal then new package install
- Closes: #624284
-
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 22 Apr 2011 16:27:11 +0200
-
-biomaj (1.1.0-1) unstable; urgency=low
-
- * Initial release (Closes: #609038)
- First Debian package, fixed copyright file to list all licenses
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 05 Jan 2011 10:39:00 +0100
Copied: trunk/packages/biomaj/tags/1.2.0-6/debian/changelog (from rev 11432, trunk/packages/biomaj/trunk/debian/changelog)
===================================================================
--- trunk/packages/biomaj/tags/1.2.0-6/debian/changelog (rev 0)
+++ trunk/packages/biomaj/tags/1.2.0-6/debian/changelog 2012-06-22 10:40:41 UTC (rev 11434)
@@ -0,0 +1,105 @@
+biomaj (1.2.0-6) unstable; urgency=low
+
+ [ Olivier Sallou ]
+ * Clean files for purge (Closes: #678490).
+
+ [ Andreas Tille ]
+ * debian/upstream: Enhance upstream information (authors format, missing
+ fields)
+
+ [Debconf translation updates]
+ * French (Olivier Sallou, proofread by the French l10n team).
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 08 May 2012 22:46:34 +0200
+
+biomaj (1.2.0-5) unstable; urgency=low
+
+ * Add missing file to package to get the console help (Closes: #658833)
+ - biomaj.install
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 01 Feb 2012 10:00:03 +0100
+
+biomaj (1.2.0-4) unstable; urgency=low
+
+ * [Olivier Sallou]
+ * config: remove biomaj/jdk_home, not needed anymore
+
+ * Debconf templates and debian/control reviewed by the debian-l10n-
+ english team as part of the Smith review project. Closes: #653408
+ * [Debconf translation updates]
+ * Russian (Yuri Kozlov). Closes: #656111
+ * Italian (Francesca Ciceri). Closes: #656254
+ * French (Olivier Sallou). Closes: #656066
+ * Czech (Michal Simunek). Closes: #656670
+ * Dutch; (Jeroen Schot). Closes: #657009
+ * German (Chris Leick). Closes: #657024
+ * Danish (Joe Hansen). Closes: #657341
+ * Indonesian (Mahyuddin Susanto). Closes: #657463
+ * Spanish; (Camaleón). Closes: #657491
+ * Polish (Michał Kułach). Closes: #657512
+ * Swedish (Martin Bagge / brother). Closes: #657548
+ * Portuguese (Miguel Figueiredo). Closes: #657664
+
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 16 Dec 2011 15:53:10 +0100
+
+biomaj (1.2.0-3) unstable; urgency=low
+
+ * Add Portuguese translation for debconf (Closes: #651680)
+ - Thanks to Pedro Ribeiro <p.m42.ribeiro at gmail.com>
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 16 Dec 2011 09:25:22 +0100
+
+biomaj (1.2.0-2) unstable; urgency=low
+
+ * Fix Mysql dependency name.
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 11 Nov 2011 10:25:39 +0100
+
+biomaj (1.2.0-1) unstable; urgency=low
+
+ * New upstream release with new features and bug fixes.
+ * Change in database model, migration script ran at install
+ * New post processes added in default install (emboss)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Thu, 18 Aug 2011 09:55:23 +0200
+
+biomaj (1.1.0-3) unstable; urgency=low
+
+ * Change priority in debconf message for jdk home
+ * Add spanish translation of debconf:
+ Thanks to Camaleón <noelamac at gmail.com>
+ Closes: #632952
+ * Add sweden translation of debconf:
+ Thanks to Martin Bagge <brother at bsnet.se>
+ Closes: #628927
+ * Add german translation of debconf:
+ Thanks to Chris Leick <c.leick at vollbio.de>
+ Closes: #629455
+ * Change openjdk dependency to add default-jdk and sun jdk possible depends
+ Closes: #633523
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Thu, 11 Jul 2011 09:55:23 +0200
+
+biomaj (1.1.0-2) unstable; urgency=low
+
+ * Add russian translation of debconf:
+ Thanks to Yuri Kozlov <yuray at komyakino.ru>
+ Closes: #623807
+ * debian/patches/fix623558_remove_pid:
+ Remove unnecessary pid file creation
+ Closes: #623558
+ * debian/postrm,debian/preinst:
+ Issue for smooth upgrade, require old package
+ removal then new package install
+ Closes: #624284
+
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 22 Apr 2011 16:27:11 +0200
+
+biomaj (1.1.0-1) unstable; urgency=low
+
+ * Initial release (Closes: #609038)
+ First Debian package, fixed copyright file to list all licenses
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 05 Jan 2011 10:39:00 +0100
Deleted: trunk/packages/biomaj/tags/1.2.0-6/debian/control
===================================================================
--- trunk/packages/biomaj/trunk/debian/control 2012-06-21 19:43:37 UTC (rev 11428)
+++ trunk/packages/biomaj/tags/1.2.0-6/debian/control 2012-06-22 10:40:41 UTC (rev 11434)
@@ -1,44 +0,0 @@
-Source: biomaj
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <olivier.sallou at irisa.fr>
-DM-Upload-Allowed: yes
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/biomaj/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj/trunk/
-Homepage: http://biomaj.genouest.org
-Build-Depends: debhelper (>= 7.1)
-Build-Depends-Indep: debconf, po-debconf, openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libhsqldb-java, ant-contrib,
- liblog4j1.2-java, libcommons-net2-java, libcommons-dbcp-java, libgnumail-java, libcommons-pool-java,
- libgnujaf-java, libjgoodies-forms-java, liboro-java, libregexp-java,
- libjcommon-java, libjsch-java, libjdom1-java, junit4, libsaxonb-java, libjdepend-java,
- javahelper (>=0.25), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java,
- libjets3t-java
-Standards-Version: 3.9.2
-
-Package: biomaj
-Architecture: all
-Depends: ${misc:Depends}, ${java:Depends},
- openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libmysql-java, debconf,
- libhsqldb-java,ant-contrib,liblog4j1.2-java,libcommons-net2-java (>= 2.2),libcommons-dbcp-java (>= 1.2),
- libgnumail-java, libcommons-pool-java (>= 1.5), libgnujaf-java, libjgoodies-forms-java (>= 1.2),
- liboro-java (>= 2.0),libregexp-java (>= 1.4),libjcommon-java (>= 1.0),libjsch-java (>= 0.1.42),
- libjdom1-java (>= 1.1),junit4,libsaxonb-java (>= 0.9), libcommons-cli-java, libcommons-codec-java,
- libcommons-httpclient-java, libcommons-logging-java,libjets3t-java, perl,
- mysql-server
-Suggests: ncbi-tools-bin, blast2
-Description: biological data-bank updater
- BioMAJ downloads remote data banks, checks their status and applies
- transformation workflows, with consistent state, to provide ready-to-use
- data for biologists and bioinformaticians. For example, it can transform
- original FASTA files into BLAST indexes. It is very flexible and its
- post-processing facilities can be extended very easily.
-
-Package: biomaj-properties
-Architecture: all
-Depends: ${misc:Depends}
-Description: biological data-bank updater - example properties files
- This package contains a set of data bank properties files that can be
- used as examples for BioMAJ. It contains descriptions for many existing
- data banks with or without workflows to transform data. Some files may
- require additional programs (such as BLAST) for post-processing.
Copied: trunk/packages/biomaj/tags/1.2.0-6/debian/control (from rev 11433, trunk/packages/biomaj/trunk/debian/control)
===================================================================
--- trunk/packages/biomaj/tags/1.2.0-6/debian/control (rev 0)
+++ trunk/packages/biomaj/tags/1.2.0-6/debian/control 2012-06-22 10:40:41 UTC (rev 11434)
@@ -0,0 +1,44 @@
+Source: biomaj
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <osallou at debian.org>
+DM-Upload-Allowed: yes
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/biomaj/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj/trunk/
+Homepage: http://biomaj.genouest.org
+Build-Depends: debhelper (>= 7.1)
+Build-Depends-Indep: debconf, po-debconf, openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libhsqldb-java, ant-contrib,
+ liblog4j1.2-java, libcommons-net2-java, libcommons-dbcp-java, libgnumail-java, libcommons-pool-java,
+ libgnujaf-java, libjgoodies-forms-java, liboro-java, libregexp-java,
+ libjcommon-java, libjsch-java, libjdom1-java, junit4, libsaxonb-java, libjdepend-java,
+ javahelper (>=0.25), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java,
+ libjets3t-java
+Standards-Version: 3.9.3
+
+Package: biomaj
+Architecture: all
+Depends: ${misc:Depends}, ${java:Depends},
+ openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libmysql-java, debconf,
+ libhsqldb-java,ant-contrib,liblog4j1.2-java,libcommons-net2-java (>= 2.2),libcommons-dbcp-java (>= 1.2),
+ libgnumail-java, libcommons-pool-java (>= 1.5), libgnujaf-java, libjgoodies-forms-java (>= 1.2),
+ liboro-java (>= 2.0),libregexp-java (>= 1.4),libjcommon-java (>= 1.0),libjsch-java (>= 0.1.42),
+ libjdom1-java (>= 1.1),junit4,libsaxonb-java (>= 0.9), libcommons-cli-java, libcommons-codec-java,
+ libcommons-httpclient-java, libcommons-logging-java,libjets3t-java, perl,
+ mysql-server
+Suggests: ncbi-tools-bin, blast2
+Description: biological data-bank updater
+ BioMAJ downloads remote data banks, checks their status and applies
+ transformation workflows, with consistent state, to provide ready-to-use
+ data for biologists and bioinformaticians. For example, it can transform
+ original FASTA files into BLAST indexes. It is very flexible and its
+ post-processing facilities can be extended very easily.
+
+Package: biomaj-properties
+Architecture: all
+Depends: ${misc:Depends}
+Description: biological data-bank updater - example properties files
+ This package contains a set of data bank properties files that can be
+ used as examples for BioMAJ. It contains descriptions for many existing
+ data banks with or without workflows to transform data. Some files may
+ require additional programs (such as BLAST) for post-processing.
Deleted: trunk/packages/biomaj/tags/1.2.0-6/debian/postrm
===================================================================
--- trunk/packages/biomaj/trunk/debian/postrm 2012-06-21 19:43:37 UTC (rev 11428)
+++ trunk/packages/biomaj/tags/1.2.0-6/debian/postrm 2012-06-22 10:40:41 UTC (rev 11434)
@@ -1,29 +0,0 @@
-#!/bin/sh
-
-set -e
-
-# Source debconf library.
-. /usr/share/debconf/confmodule
-
-case "$1" in
- purge)
- # Remove all
- if [ -e /usr/share/biomaj ]; then
- rm -rf /usr/share/biomaj
- fi
- echo "Warning, BioMAJ database for MySQL is not deleted by process removal."
- ;;
- remove|upgrade|failed-upgrade|abort-install|disappear)
- echo "Warning, BioMAJ database for MySQL is not deleted by process removal." ;;
- abort-upgrade)
- ;;
- *)
- echo "postrm called with unknown argument \`$1'" >&2
- exit 1
- ;;
-esac
-
-
-
-#DEBHELPER#
-
Copied: trunk/packages/biomaj/tags/1.2.0-6/debian/postrm (from rev 11431, trunk/packages/biomaj/trunk/debian/postrm)
===================================================================
--- trunk/packages/biomaj/tags/1.2.0-6/debian/postrm (rev 0)
+++ trunk/packages/biomaj/tags/1.2.0-6/debian/postrm 2012-06-22 10:40:41 UTC (rev 11434)
@@ -0,0 +1,33 @@
+#!/bin/sh
+
+set -e
+
+# Source debconf library.
+. /usr/share/debconf/confmodule
+
+case "$1" in
+ purge)
+ # Remove generated data and migration info
+ if [ -e /var/lib/biomaj ]; then
+ rm -rf /var/lib/biomaj
+ fi
+ # Remove all
+ if [ -e /usr/share/biomaj ]; then
+ rm -rf /usr/share/biomaj
+ fi
+ echo "Warning, BioMAJ database for MySQL is not deleted by process removal."
+ ;;
+ remove|upgrade|failed-upgrade|abort-install|disappear)
+ echo "Warning, BioMAJ database for MySQL is not deleted by process removal." ;;
+ abort-upgrade)
+ ;;
+ *)
+ echo "postrm called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+
+
+#DEBHELPER#
+
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