[med-svn] [SCM] r-bioc-limma branch, meta, updated. meta/3.8.3-1-3-g292ea04
Charles Plessy
plessy at debian.org
Wed Mar 7 04:26:50 UTC 2012
The following commit has been merged in the meta branch:
commit b972ccab7fe899cdacfc605e9e0966243e160c78
Author: Charles Plessy <plessy at debian.org>
Date: Wed Mar 7 13:21:02 2012 +0900
Build logs for 3.10.0-1.
diff --git a/armel.log b/armel.log
index b860bc2..798b86c 100644
--- a/armel.log
+++ b/armel.log
@@ -1,67 +1,67 @@
-From buildd at alwyn.debian.org Sun Aug 14 12:22:52 2011
-Return-path: <buildd at alwyn.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at arnold.debian.org Fri Nov 04 06:05:36 2011
+Return-path: <buildd at arnold.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at alwyn.debian.org>)
- id 1QsZiN-0007OC-LB
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:22:52 +0000
-Received: from alwyn.islands.arm.com ([217.140.96.59] helo=alwyn.debian.org)
+ (Exim 4.72) (envelope-from <buildd at arnold.debian.org>)
+ id 1RMCuG-0002Ae-9d
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 06:05:36 +0000
+Received: from arnold.islands.arm.com ([217.140.96.57] helo=arnold.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=alwyn.debian.org, EMAIL=hostmaster at alwyn.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at alwyn.debian.org>)
- id 1QsZiL-0004IA-3I
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:22:49 +0000
-Received: from buildd by alwyn.debian.org with local (Exim 4.72)
- (envelope-from <buildd at alwyn.debian.org>)
- id 1QsZiK-0002CZ-5d; Sun, 14 Aug 2011 12:22:48 +0000
-Date: Sun, 14 Aug 2011 12:22:48 +0000
-Message-Id: <E1QsZiK-0002CZ-5d at alwyn.debian.org>
-From: buildd on alwyn <buildd at alwyn.debian.org>
-To: buildd-porters at alwyn.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on armel (dist=sid)
+ CN=arnold.debian.org, EMAIL=hostmaster at arnold.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at arnold.debian.org>)
+ id 1RMCuF-0008HH-CQ
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 06:05:35 +0000
+Received: from buildd by arnold.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at arnold.debian.org>)
+ id 1RMCuE-0000YO-6X; Fri, 04 Nov 2011 06:05:34 +0000
+Date: Fri, 04 Nov 2011 06:05:34 +0000
+Message-Id: <E1RMCuE-0000YO-6X at arnold.debian.org>
+From: buildd on arnold <buildd at arnold.debian.org>
+To: buildd-porters at arnold.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on armel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on alwyn.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on arnold.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (armel) 14 Aug 2011 12:14 ║
+║ r-bioc-limma 3.10.0-1 (armel) 04 Nov 2011 05:57 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
+Source Version: 3.10.0-1
Architecture: armel
Get:1 http://ftp.uk.debian.org unstable InRelease [146 kB]
Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [5431 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [5890 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
Get:5 http://incoming.debian.org Release [1604 B]
-Get:6 http://incoming.debian.org unstable/main Sources [5431 kB]
-Get:7 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
-Get:8 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
-Get:9 http://incoming.debian.org unstable/main armel Packages [7420 kB]
-Get:10 http://ftp.uk.debian.org unstable/contrib Sources [52.5 kB]
-Get:11 http://ftp.uk.debian.org unstable/non-free Sources [95.7 kB]
-Get:12 http://ftp.uk.debian.org unstable/main armel Packages [7420 kB]
-Get:13 http://incoming.debian.org unstable/contrib armel Packages [54.4 kB]
+Get:6 http://incoming.debian.org unstable/main Sources [5890 kB]
+Get:7 http://ftp.uk.debian.org unstable/contrib Sources [56.9 kB]
+Get:8 http://ftp.uk.debian.org unstable/non-free Sources [103 kB]
+Get:9 http://ftp.uk.debian.org unstable/main armel Packages [7651 kB]
+Get:10 http://ftp.uk.debian.org unstable/contrib armel Packages [55.2 kB]
+Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
+Get:11 http://ftp.uk.debian.org unstable/main TranslationIndex [2045 B]
+Ign http://ftp.uk.debian.org unstable/contrib Translation-en
+Get:12 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:14 http://incoming.debian.org unstable/main armel Packages [7651 kB]
+Get:15 http://incoming.debian.org unstable/contrib armel Packages [55.2 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:14 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
-Get:15 http://incoming.debian.org Sources [25.0 kB]
-Get:16 http://incoming.debian.org Packages [110 kB]
+Get:16 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
+Get:17 http://incoming.debian.org Sources [31.9 kB]
+Get:18 http://incoming.debian.org Packages [571 kB]
Ign http://incoming.debian.org Translation-en
Ign http://incoming.debian.org unstable/contrib Translation-en
-Get:17 http://ftp.uk.debian.org unstable/contrib armel Packages [54.4 kB]
-Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
-Get:18 http://ftp.uk.debian.org unstable/main TranslationIndex [2185 B]
-Ign http://ftp.uk.debian.org unstable/contrib Translation-en
-Fetched 26.5 MB in 1min 6s (402 kB/s)
+Fetched 28.4 MB in 1min 3s (448 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -82,11 +82,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 1s (632 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 1s (830 kB/s)
Download complete and in download only mode
Check arch
@@ -100,18 +100,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 21 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 21 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -123,61 +123,64 @@ Checking for already installed dependencies...
base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-2)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
bsdutils: already installed (1:2.19.1-5)
mount: already installed (2.19.1-5)
util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-16)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg
+ libgomp1-dbg libquadmath-dbg libmudflap0-dbg binutils-gold gettext-doc
gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html tclreadline gvfs-bin
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -186,286 +189,327 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 4 not upgraded.
-Need to get 46.8 MB of archives.
-After this operation, 121 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.0-3 [33.8 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-4 [223 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.4-3 [25.4 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.0.1-7 [118 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.6-1 [387 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.8.0-3 [270 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.6.1-6 [255 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.7-2 [50.1 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.22.2-1 [372 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.46-3 [181 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.6-3 [16.0 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.0-3 [21.5 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.7-3 [39.5 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.4-1 [832 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.7-3 [14.8 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.7-3 [9178 B]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.6-2 [30.4 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.10.2-6.1 [908 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.28.6-1 [1535 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.15-2 [40.4 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.2.0-3 [53.7 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.8.0-3 [334 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.28.4-2 [407 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 8.12-4 [111 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.0-2 [28.1 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.0-3 [46.0 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.1-2 [16.0 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.1-2 [177 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 8.2.3 [207 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-6 [1072 kB]
-Get:37 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.0.2-2 [990 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.04-5+b1 [235 kB]
-Get:39 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.04-5+b1 [49.4 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-4 [139 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-4 [815 kB]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.2-1 [113 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-4 [409 kB]
-Get:45 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-4 [1984 kB]
-Get:46 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:47 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:48 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
-Get:49 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:50 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:51 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.1-6 [4925 kB]
-Get:52 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.1-2 [1124 B]
-Get:53 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armel 1.2.20110419-2 [278 kB]
-Get:54 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2.20110419-2 [287 kB]
-Get:55 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.5-6 [34.6 kB]
-Get:56 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62 armel 6b1-2 [88.6 kB]
-Get:57 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armel 8c-2 [152 kB]
-Get:58 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armel 8c-2 [258 kB]
-Get:59 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armel 3.3.1-1 [2200 kB]
-Get:60 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.3.1-1 [2374 kB]
-Get:61 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-1 [474 kB]
-Get:62 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu1 [22.6 kB]
-Get:63 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu1 [18.7 kB]
-Get:64 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 8.12-4 [301 kB]
-Get:65 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.3.4.dfsg-3 [190 kB]
-Get:66 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.46-3 [259 kB]
-Get:67 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-2 [237 kB]
-Get:68 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-2 [880 B]
-Get:69 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.5-1 [191 kB]
-Get:70 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-4 [329 kB]
-Get:71 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-5 [190 kB]
-Get:72 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:73 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.10-1 [1569 kB]
-Get:74 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.10-1 [1123 kB]
-Get:75 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.13.1-1 [15.1 MB]
-Get:76 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 76 newly installed, 0 to remove and 13 not upgraded.
+Need to get 67.0 MB of archives.
+After this operation, 119 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 armel 4.6.2-1 [28.4 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base armel 4.6.2-1 [136 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 armel 1:4.6.2-1 [24.7 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 armel 4.6.2-1 [4330 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev armel 4.6.2-1 [1709 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 armel 4.6.2-1 [5205 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 armel 4.6.2-1 [4541 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 armel 4.6.2-1 [291 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.0-4 [34.0 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-4 [223 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.28.8-1 [1552 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-5 [815 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.2-2 [110 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.4-3 [25.4 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.0.1-7.2 [114 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.7-2 [391 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.8.0-3 [270 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.6.2-1 [255 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.7-2 [50.1 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.23.8-1 [401 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.46-3 [181 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.6-3 [16.0 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.0-3 [21.5 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.7-3 [39.5 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.4-2 [833 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.7-3 [14.8 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.7-3 [9178 B]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.6-2 [30.4 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.10.2-6.1 [908 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.15-2 [40.4 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.2.0-3 [53.7 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.8.0-3 [334 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.29.4-2 [422 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 8.12-4 [111 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.0-2 [28.1 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armel 8c-2 [152 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.5-2 [188 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.0-3 [46.0 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.1-2 [16.0 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.1-2 [177 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 8.2.3 [207 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-6 [1072 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.0.2-2 [990 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.09-2 [247 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.09-2 [51.8 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-5 [138 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-5 [1980 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.2-1 [4924 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.1-3 [1126 B]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armel 1.2.20110419-2 [278 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2.20110419-2 [287 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.5-7 [34.1 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armel 8c-2 [258 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armel 3.3.1-1 [2200 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.3.1-1 [2374 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armel 5.9-2 [64.3 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-2 [411 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu1 [22.6 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu1 [18.7 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 8.12-4 [301 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.3.4.dfsg-3 [190 kB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.46-3 [259 kB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-7 [237 kB]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-7 [888 B]
+Get:78 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-4 [329 kB]
+Get:79 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-5 [190 kB]
+Get:80 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:81 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.10-1 [1569 kB]
+Get:82 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.10-1 [1123 kB]
+Get:83 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.14.0-1 [19.1 MB]
+Get:84 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 46.8 MB in 20s (2309 kB/s)
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10542 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_armel.deb) ...
-Selecting previously deselected package libpcre3.
+Fetched 67.0 MB in 7s (9201 kB/s)
+(Reading database ... 10465 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-16 (using .../libgomp1_4.6.2-1_armel.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.1-16 (using .../gcc-4.6-base_4.6.2-1_armel.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.2-1) ...
+(Reading database ... 10466 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-16 (using .../libgcc1_1%3a4.6.2-1_armel.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.2-1) ...
+(Reading database ... 10466 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-16 (using .../cpp-4.6_4.6.2-1_armel.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-16 (using .../libstdc++6-4.6-dev_4.6.2-1_armel.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.1-16 (using .../g++-4.6_4.6.2-1_armel.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.1-16 (using .../gcc-4.6_4.6.2-1_armel.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.1-16 (using .../libstdc++6_4.6.2-1_armel.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.2-1) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10466 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_armel.deb) ...
+Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_armel.deb) ...
-Selecting previously deselected package libdatrie1.
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_armel.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_armel.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_armel.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_armel.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_armel.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_armel.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_armel.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_armel.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_armel.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_armel.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-1_armel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_armel.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_armel.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_armel.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_armel.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_armel.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_armel.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_armel.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_armel.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_armel.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_armel.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_armel.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_armel.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_armel.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_armel.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_armel.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_armel.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_armel.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_armel.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_armel.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_armel.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_armel.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_armel.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_armel.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_armel.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_armel.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_armel.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_armel.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_armel.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_armel.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_armel.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_armel.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_armel.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_armel.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_armel.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_armel.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_armel.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_armel.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_armel.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_armel.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_armel.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_armel.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_armel.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_armel.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-1_armel.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_armel.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_armel.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_armel.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_armel.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_armel.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_armel.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_armel.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_armel.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_armel.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_armel.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_armel.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_armel.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_armel.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_armel.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_armel.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_armel.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_armel.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_armel.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_armel.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_armel.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_armel.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_armel.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_armel.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_armel.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_armel.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_armel.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_armel.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_armel.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_armel.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-1) ...
+Setting up cpp-4.6 (4.6.2-1) ...
+Setting up gcc-4.6 (4.6.2-1) ...
+Setting up libpipeline1 (1.2.0-4) ...
Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-6) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-1) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
@@ -475,35 +519,31 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-6) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-1) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -511,9 +551,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -521,20 +560,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-1) ...
+Setting up g++-4.6 (4.6.2-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 13 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32 armel (armv5tel)
-Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc6_2.13-16 libc6-dev_2.13-16 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-1 gcc-4.6_4.6.2-1 libc6-dev_2.13-21 libstdc++6_4.6.2-1 libstdc++6-4.6-dev_4.6.2-1 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-1 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-1 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-1 gcc-4.6-base_4.6.2-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-1 libgdbm3_1.8.3-10 libgfortran3_4.6.2-1 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-1 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-1 libstdc++6-4.6-dev_4.6.2-1 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011m-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -545,12 +586,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -559,14 +600,9 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture armel
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -574,9 +610,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -598,20 +634,20 @@ test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `update-config'.
fakeroot debian/rules binary-arch
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -621,43 +657,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/src'
-installing to /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -689,58 +727,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_armel.deb'.
- dpkg-genchanges -B -marmel Build Daemon (alwyn) <buildd_armel-alwyn at buildd.debian.org> >../r-bioc-limma_3.8.3-1_armel.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org> >../r-bioc-limma_3.10.0-1_armel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110814-1222
+Build finished at 20111104-0605
-r-bioc-limma_3.8.3-1_armel.changes:
+r-bioc-limma_3.10.0-1_armel.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: armel
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
-Maintainer: armel Build Daemon (alwyn) <buildd_armel-alwyn at buildd.debian.org>
+Maintainer: armel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- 1c3a4f113117f2706940bcd5281b15efb4a6346b 1401670 r-bioc-limma_3.8.3-1_armel.deb
+ b256013dd52001f2d1965c1ce88024c9aa71affb 1472170 r-bioc-limma_3.10.0-1_armel.deb
Checksums-Sha256:
- f7a3f22e89906d5ed32ad51dbacadb014e5408d500614ca0ddf378ff19eaa402 1401670 r-bioc-limma_3.8.3-1_armel.deb
+ b9c9eda40a551258c90b9a04c89eb70a5cba8061bee909abfd64c9a587d14ff7 1472170 r-bioc-limma_3.10.0-1_armel.deb
Files:
- 6a5685daab2b533418b9158bf52f8fea 1401670 gnu-r optional r-bioc-limma_3.8.3-1_armel.deb
+ 592561e1e8c0a24f33b8f19c399d34f4 1472170 gnu-r optional r-bioc-limma_3.10.0-1_armel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_armel.deb
-──────────────────────────────
+r-bioc-limma_3.10.0-1_armel.deb
+───────────────────────────────
new debian package, version 2.0.
- size 1401670 bytes: control archive= 1515 bytes.
- 767 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1472170 bytes: control archive= 1538 bytes.
+ 768 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: armel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1680
- Depends: libc6 (>= 2.4), r-base-core (>= 2.13.1~)
+ Installed-Size: 1677
+ Depends: libc6 (>= 2.4), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -752,50 +790,51 @@ r-bioc-limma_3.8.3-1_armel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/
-drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 13848 2011-08-14 12:22 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 449996 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6150 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3255 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2363 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1344 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/paths.rds
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 687780 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1711 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 84899 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 45616 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/limma.pdf
-drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 173274 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3749 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma.rdx
--rwxr-xr-x root/root 1230 2011-08-14 12:21 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 5947 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 505 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 1056 2011-08-14 12:21 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5524 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 217 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 2854 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/links.rds
-drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-08-14 12:21 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-08-14 12:21 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 1872 2011-08-14 12:21 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 9360 2011-08-14 12:22 ./usr/lib/R/site-library/limma/INDEX
--rw-r--r-- root/root 1011 2011-08-14 12:21 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 234 2011-08-14 12:20 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2117 2011-08-14 12:20 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/
+-rwxr-xr-x root/root 1230 2011-11-04 06:04 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-11-04 06:05 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 13848 2011-11-04 06:05 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 972 2011-11-04 06:04 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 1901 2011-11-04 06:04 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2392 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 3257 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 455445 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1351 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6221 2011-11-04 06:04 ./usr/lib/R/site-library/limma/help/AnIndex
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 87742 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 1711 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 737661 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 42743 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 673 2011-11-04 06:04 ./usr/lib/R/site-library/limma/doc/index.html
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-11-04 06:04 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3785 2011-11-04 06:04 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 197382 2011-11-04 06:04 ./usr/lib/R/site-library/limma/R/limma.rdb
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2011-11-04 06:04 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-04 06:04 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 216 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5603 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 1056 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 518 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 6023 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 2886 2011-11-04 06:04 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1984 2011-11-04 06:04 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 9458 2011-11-04 06:04 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 06:04 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 06:05 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 329 2011-11-04 06:03 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2118 2011-11-04 06:03 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -809,7 +848,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-armel-sbuild-e28c0535-9ca6-43f9-8ae3-e353fa42074c/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh
+Purging /var/lib/schroot/mount/sid-armel-sbuild-1aa1d36d-d6e7-4c69-bde2-b20921a5c637/build/buildd-r-bioc-limma_3.10.0-1-armel-jvrFHX
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -817,19 +856,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: armel
-Build-Space: 5088
-Build-Time: 114
+Build-Space: 5312
+Build-Time: 117
Distribution: sid
-Install-Time: 266
-Job: r-bioc-limma_3.8.3-1
+Install-Time: 293
+Job: r-bioc-limma_3.10.0-1
Package: r-bioc-limma
-Package-Time: 483
-Source-Version: 3.8.3-1
-Space: 5088
+Package-Time: 506
+Source-Version: 3.10.0-1
+Space: 5312
Status: successful
-Version: 3.8.3-1
+Version: 3.10.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110814-1222
-Build needed 00:08:03, 5088k disc space
-Signature with key 'BC8BBB6D' requested:
+Finished at 20111104-0605
+Build needed 00:08:26, 5312k disc space
+Signature with key '8EF8A95A' requested:
diff --git a/armhf.log b/armhf.log
new file mode 100644
index 0000000..417a512
--- /dev/null
+++ b/armhf.log
@@ -0,0 +1,817 @@
+From buildd at hasse.debian.org Tue Dec 27 06:57:38 2011
+Return-path: <buildd at hasse.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at hasse.debian.org>)
+ id 1RfQyg-0003lN-NC
+ for logs at buildd.debian.org; Tue, 27 Dec 2011 06:57:38 +0000
+Received: from [217.140.96.68] (helo=hasse.debian.org)
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=hasse.debian.org, EMAIL=hostmaster at hasse.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at hasse.debian.org>)
+ id 1RfQyf-0003dO-MA
+ for logs at buildd.debian.org; Tue, 27 Dec 2011 06:57:37 +0000
+Received: from buildd by hasse.debian.org with local (Exim 4.77)
+ (envelope-from <buildd at hasse.debian.org>)
+ id 1RfQyM-0003Fy-MW; Tue, 27 Dec 2011 06:57:18 +0000
+From: buildd on hasse <buildd at hasse.debian.org>
+To: logs at buildd.debian.org,buildd-porters at hasse.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on armhf (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+Message-Id: <E1RfQyM-0003Fy-MW at hasse.debian.org>
+Date: Tue, 27 Dec 2011 06:57:18 +0000
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on hasse.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.10.0-1 (armhf) 27 des 2011 06:49 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.10.0-1
+Source Version: 3.10.0-1
+Architecture: armhf
+Get:1 http://incoming.debian.org unstable InRelease [189 kB]
+Get:2 http://ftp.uk.debian.org unstable InRelease [189 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [5952 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [5952 kB]
+Get:6 http://incoming.debian.org unstable/contrib Sources [54.8 kB]
+Get:7 http://incoming.debian.org unstable/non-free Sources [101 kB]
+Get:8 http://incoming.debian.org unstable/main armhf Packages [6986 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib Sources [54.8 kB]
+Get:10 http://ftp.uk.debian.org unstable/non-free Sources [101 kB]
+Get:11 http://ftp.uk.debian.org unstable/main armhf Packages [6986 kB]
+Get:12 http://incoming.debian.org unstable/contrib armhf Packages [39.0 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:13 http://incoming.debian.org unstable/main TranslationIndex [2085 B]
+Get:14 http://incoming.debian.org Release [1616 B]
+Get:15 http://incoming.debian.org Sources [44.2 kB]
+Get:16 http://incoming.debian.org Packages [426 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Get:17 http://ftp.uk.debian.org unstable/contrib armhf Packages [39.0 kB]
+Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
+Get:18 http://ftp.uk.debian.org unstable/main TranslationIndex [2085 B]
+Ign http://ftp.uk.debian.org unstable/contrib Translation-en
+Fetched 27.1 MB in 1min 16s (355 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-limma.git
+Need to get 974 kB of source archives.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 1s (858 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.18.2-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+libc6-dev: already installed (2.13-24)
+gcc: already installed (4:4.6.2-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-2 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.9.13
+cdbs: missing
+r-base-dev: missing
+Using default version 2.14.1-1
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded.
+Need to get 52.9 MB of archives.
+After this operation, 102 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.0-5+b1 [32.4 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armhf 8.12-4 [222 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armhf 3.0.10-3+b1 [22.3 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.30.2-4 [1672 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.7.8.dfsg-5 [775 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armhf 0.6.2-2+b1 [104 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armhf 0.2.5-3 [25.4 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armhf 2.0.1-7.2+b1 [106 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armhf 2.4.8-1+b1 [371 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armhf 2.8.0-3+b1 [264 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armhf 4.6.2-9 [223 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+10 [281 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libice6 armhf 2:1.0.7-2 [47.5 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armhf 0.24.0-1 [384 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armhf 1.2.46-3+b1 [174 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armhf 1:1.0.6-4 [15.8 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armhf 1:1.1.0-4 [21.2 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armhf 1.7-4 [38.3 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armhf 2:1.4.4-4 [805 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armhf 1.7-4 [15.2 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armhf 1.7-4 [9368 B]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armhf 1:0.9.6-2 [27.4 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armhf 1.10.2-6.2 [881 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.16-3 [203 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armhf 0.1.16-3 [40.8 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armhf 2.2.0-3 [50.8 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armhf 2.8.0-3+b1 [333 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armhf 1.29.4-2 [396 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armhf 8.12-4 [110 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armhf 2:1.2.0-2 [27.1 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armhf 8c-2+b1 [121 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armhf 3.9.5-2+b1 [176 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armhf 0.9.3-5+b1 [404 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armhf 2:1.3.0-3 [45.2 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armhf 1:1.2.1-2 [15.6 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armhf 1:1.1.1-2 [166 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 8.2.3 [201 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.21-6 [1029 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.0.2-3 [976 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 5.09-2 [244 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main file armhf 5.09-2 [51.6 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.1.1-5 [131 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.100 [77.1 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main html2text armhf 1.3.2a-15 [97.2 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.1.1-5 [1925 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.9.13 [694 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.34 [95.1 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armhf 4.6.2-9 [4601 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main gfortran armhf 4:4.6.2-2 [1124 B]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armhf 1.2.20110419-2 [189 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armhf 1.2.20110419-2 [192 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armhf 1.0.6-1 [31.8 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armhf 8c-2+b1 [225 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armhf 3.3.1-1 [3279 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armhf 3.3.1-1 [3531 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armhf 5.9-4 [84.0 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armhf 5.9-4 [376 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armhf 1.1.24+nmu1 [20.6 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armhf 1.1.24+nmu1 [17.7 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armhf 8.12-4 [298 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armhf 1:1.2.3.4.dfsg-3 [200 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armhf 1.2.46-3+b1 [254 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armhf 6.2-8 [230 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armhf 6.2-8 [896 B]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main zip armhf 3.0-4 [315 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main unzip armhf 6.0-5 [182 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1+git20111210-3 [83.2 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armhf 8.5.11-1 [1532 kB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armhf 8.5.11-1 [1074 kB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armhf 2.14.1-1 [19.8 MB]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.14.1-1 [3556 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 52.9 MB in 9s (5543 kB/s)
+Selecting previously unselected package libpipeline1.
+(Reading database ... 12689 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5+b1_armhf.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_armhf.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3+b1_armhf.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_armhf.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_armhf.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2+b1_armhf.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_armhf.deb) ...
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2+b1_armhf.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1+b1_armhf.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously unselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3+b1_armhf.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-9_armhf.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+10_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_armhf.deb) ...
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.0-1_armhf.deb) ...
+Selecting previously unselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3+b1_armhf.deb) ...
+Selecting previously unselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_armhf.deb) ...
+Selecting previously unselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_armhf.deb) ...
+Selecting previously unselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-4_armhf.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_armhf.deb) ...
+Selecting previously unselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-4_armhf.deb) ...
+Selecting previously unselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-4_armhf.deb) ...
+Selecting previously unselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_armhf.deb) ...
+Selecting previously unselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.2_armhf.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.16-3_all.deb) ...
+Selecting previously unselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.16-3_armhf.deb) ...
+Selecting previously unselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_armhf.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3+b1_armhf.deb) ...
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_armhf.deb) ...
+Selecting previously unselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_armhf.deb) ...
+Selecting previously unselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_armhf.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2+b1_armhf.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2+b1_armhf.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5+b1_armhf.deb) ...
+Selecting previously unselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_armhf.deb) ...
+Selecting previously unselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_armhf.deb) ...
+Selecting previously unselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_armhf.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_armhf.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6_armhf.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-3_armhf.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_armhf.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_armhf.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_armhf.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.100_all.deb) ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_armhf.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.13_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.34_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-9_armhf.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-2_armhf.deb) ...
+Selecting previously unselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_armhf.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_armhf.deb) ...
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_armhf.deb) ...
+Selecting previously unselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2+b1_armhf.deb) ...
+Selecting previously unselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_armhf.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_armhf.deb) ...
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_armhf.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_armhf.deb) ...
+Selecting previously unselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_armhf.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_armhf.deb) ...
+Selecting previously unselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_armhf.deb) ...
+Selecting previously unselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_armhf.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3+b1_armhf.deb) ...
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_armhf.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_armhf.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-4_armhf.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-5_armhf.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-3_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_armhf.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_armhf.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.1-1_armhf.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.1-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-5+b1) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libffi5 (3.0.10-3+b1) ...
+Setting up libglib2.0-0 (2.30.2-4) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2+b1) ...
+Setting up libdatrie1 (0.2.5-3) ...
+Setting up libexpat1 (2.0.1-7.2+b1) ...
+Setting up libfreetype6 (2.4.8-1+b1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-2) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3+b1) ...
+Setting up libgfortran3 (4.6.2-9) ...
+Setting up x11-common (1:7.6+10) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.24.0-1) ...
+Setting up libpng12-0 (1.2.46-3+b1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.7-4) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.7-4) ...
+Setting up libxcb-shm0 (1.7-4) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.2) ...
+Setting up libthai-data (0.1.16-3) ...
+Setting up libthai0 (0.1.16-3) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3+b1) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2+b1) ...
+Setting up libtiff4 (3.9.5-2+b1) ...
+Setting up libunistring0 (0.9.3-5+b1) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-3) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.100) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up gettext (0.18.1.1-5) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.9.13) ...
+Setting up dpatch (2.0.34) ...
+Setting up gfortran-4.6 (4.6.2-9) ...
+Setting up gfortran (4:4.6.2-2) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2.20110419-2) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2.20110419-2) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8c-2+b1) ...
+Setting up liblapack3gf (3.3.1-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.1-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcre3-dev (8.12-4) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpng12-dev (1.2.46-3+b1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-3) ...
+Setting up tcl8.5 (8.5.11-1) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.11-1) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.14.1-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.14.1-1) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.35.3 armhf (armv7l)
+Toolchain package versions: binutils_2.22-2 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-9 gcc-4.6_4.6.2-9 libc6-dev_2.13-24 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 linux-libc-dev_3.1.6-1
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.100 coreutils_8.13-3 cpp_4:4.6.2-2 cpp-4.6_4.6.2-9 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.13 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_4.1 diffutils_1:3.2-1 dpatch_2.0.34 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2 findutils_4.4.2-1 fontconfig_2.8.0-3+b1 fontconfig-config_2.8.0-3 g++_4:4.6.2-2 g++-4.6_4.6.2-9 gcc_4:4.6.2-2 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-10 gcc-4.6_4.6.2-9 gcc-4.6-base_4.6.2-9 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-2 gfortran-4.6_4.6.2-9 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.08 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libalgorithm-diff-perl_1.19.02-2 libalgorithm-merge-perl_0.08-2 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libcairo2_1.10.2-6.2 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2+b1 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2+b1 libffi5_3.0.10-3+b1 libfontconfig1_2.8.0-3+b1 libfreetype6_2.4.8-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-9 libgdbm3_1.8.3-10+b1 libgfortran3_4.6.2-9 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2+b1 libgomp1_4.6.2-9 libice6_2:1.0.7-2 libjpeg8_8c-2+b1 libjpeg8-dev_8c-2+b1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-5+b1 libpixman-1-0_0.24.0-1 libpng12-0_1.2.46-3+b1 libpng12-dev_1.2.46-3+b1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.0-4 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.2-9 libstdc++6-4.6-dev_4.6.2-9 libswitch-perl_2.16-2 libthai-data_0.1.16-3 libthai0_0.1.16-3 libtiff4_3.9.5-2+b1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-19+b1 libuuid1_2.19.1-5 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.7-4 libxcb-shm0_1.7-4 libxcb1_1.7-4 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.1.6-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 manpages_3.35-0.1 manpages-dev_3.35-0.1 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.1-1 r-base-dev_2.14.1-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-2 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-3 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+10 xdg-utils_1.1.0~rc1+git20111210-3 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: host architecture armhf
+ fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0'
+ fakeroot debian/rules binary-arch
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.14.1~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_armhf.deb'.
+ dpkg-genchanges -B -marmhf Build Daemon (hasse) <buildd_armhf-hasse at buildd.debian.org> >../r-bioc-limma_3.10.0-1_armhf.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.10.0
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20111227-0657
+
+r-bioc-limma_3.10.0-1_armhf.changes:
+Format: 1.8
+Date: Fri, 04 Nov 2011 13:35:49 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: armhf
+Version: 3.10.0-1
+Distribution: sid
+Urgency: low
+Maintainer: armhf Build Daemon (hasse) <buildd_armhf-hasse at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Changes:
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
+ .
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+Checksums-Sha1:
+ 14edda97e6874beb8ea43c6e9f1ec799fcd55d93 1469236 r-bioc-limma_3.10.0-1_armhf.deb
+Checksums-Sha256:
+ 7c9723b2d6e89bf5893bc7171cf3a3a57e8f967e4a98080d76c2815b8ed53738 1469236 r-bioc-limma_3.10.0-1_armhf.deb
+Files:
+ 0ef21a6f45358b45b5eb643c4b0a9978 1469236 gnu-r optional r-bioc-limma_3.10.0-1_armhf.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.10.0-1_armhf.deb
+───────────────────────────────
+
+ new debian package, version 2.0.
+ size 1469236 bytes: control archive= 1540 bytes.
+ 768 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.10.0-1
+ Architecture: armhf
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1671
+ Depends: libc6 (>= 2.4), r-base-core (>= 2.14.1~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/share/
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-12-27 06:57 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 329 2011-12-27 06:55 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2118 2011-12-27 06:55 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 737661 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 87742 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-12-27 06:56 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 1901 2011-12-27 06:56 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 1984 2011-12-27 06:56 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 455979 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3287 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2394 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1353 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6221 2011-12-27 06:56 ./usr/lib/R/site-library/limma/help/AnIndex
+drwxr-xr-x root/root 0 2011-12-27 06:57 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 6688 2011-12-27 06:57 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 519 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 6024 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1067 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5604 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2889 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-12-27 06:56 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 197851 2011-12-27 06:56 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3790 2011-12-27 06:56 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 383 2011-12-27 06:56 ./usr/lib/R/site-library/limma/R/limma
+drwxr-xr-x root/root 0 2011-12-27 06:56 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2011-12-27 06:56 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-12-27 06:56 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9458 2011-12-27 06:56 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 974 2011-12-27 06:56 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rwxr-xr-x root/root 1230 2011-12-27 06:56 ./usr/lib/R/site-library/limma/CITATION
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-armhf-sbuild-1fe2c8c8-2dee-4b28-bd68-c37792fb0707/build/buildd-r-bioc-limma_3.10.0-1-armhf-my3v6P
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: armhf
+Build-Space: 5272
+Build-Time: 101
+Distribution: sid
+Install-Time: 251
+Job: r-bioc-limma_3.10.0-1
+Package: r-bioc-limma
+Package-Time: 461
+Source-Version: 3.10.0-1
+Space: 5272
+Status: successful
+Version: 3.10.0-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20111227-0657
+Build needed 00:07:41, 5272k disc space
+Signature with key '89094F85' requested:
+
diff --git a/hurd-i386.log b/hurd-i386.log
index 4137140..ead1566 100644
--- a/hurd-i386.log
+++ b/hurd-i386.log
@@ -1,148 +1,83 @@
-From buildd at bach.debian.net Tue Aug 16 08:42:48 2011
+From buildd at bach.debian.net Fri Nov 04 06:18:29 2011
Return-path: <buildd at bach.debian.net>
Received: from callisto.debian.net ([80.87.129.151])
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at bach.debian.net>)
- id 1QtFEV-0003ck-4m
- for logs at buildd.debian.org; Tue, 16 Aug 2011 08:42:48 +0000
+ id 1RMD6i-00042w-9e
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 06:18:29 +0000
Received: from bach.debian.net ([10.3.0.1])
by callisto.debian.net with esmtp (Exim 4.69)
(envelope-from <buildd at bach.debian.net>)
- id 1QtFES-0001JY-NZ; Tue, 16 Aug 2011 09:42:44 +0100
+ id 1RMD6c-00008s-FA; Fri, 04 Nov 2011 06:18:22 +0000
Received: from buildd by bach.debian.net with local (Exim 4.72)
(envelope-from <buildd at bach.debian.net>)
- id 1QtFEX-0002pB-V4; Tue, 16 Aug 2011 08:42:50 +0000
-Message-Id: <E1QtFEX-0002pB-V4 at bach.debian.net>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.78; A2.07; B3.08; Q3.08)
-Date: Tue, 16 Aug 2011 08:42:49 +0000
+ id 1RMD6d-0000GS-Ax; Fri, 04 Nov 2011 06:18:23 +0000
+Date: Fri, 04 Nov 2011 06:18:23 +0000
+Message-Id: <E1RMD6d-0000GS-Ax at bach.debian.net>
From: Build Daemon <buildd at bach.debian.net>
-To: samuel.thibault at labri.fr, mbanck at gmx.net, logs at buildd.debian-ports.org,
- logs at buildd.debian.org, debian-hurd-build-logs at lists.alioth.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on hurd-i386
- (dist=sid)
+To: samuel.thibault at ens-lyon.org, mbanck at gmx.net, logs at buildd.debian-ports.org,
+ logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on hurd-i386
+ (dist=unstable)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.62.3 (11 Jun 2011) on bach.debian.net
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on bach.debian.net
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (hurd-i386) 16 août 2011 08:31 ║
+║ r-bioc-limma 3.10.0-1 (hurd-i386) 04 nov. 2011 06:09 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
-Distribution: sid
+Version: 3.10.0-1
+Source Version: 3.10.0-1
Architecture: hurd-i386
-
-I: NOTICE: Log filtering will replace 'build/r-bioc-limma-YP33Su/r-bioc-limma-3.8.3' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/r-bioc-limma-YP33Su' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'home/buildd/build/chroot-sid' with '«CHROOT»'
-W: Stripped single quote from command for security:
- use strict;
- use warnings;
- use POSIX;
- use FileHandle;
-
- my $lockfile="/var/lock/sbuild";
- my $try = 0;
-
- repeat:
- if (!sysopen( F, $lockfile, O_WRONLY|O_CREAT|O_TRUNC|O_EXCL, 0644 )){
- if ($! == EEXIST) {
- # lock file exists, wait
- goto repeat if !open( F, "<$lockfile" );
- my $line = <F>;
- my ($job, $pid, $user);
- close( F );
- if ($line !~ /^(\S+)\s+(\S+)\s+(\S+)/) {
- print STDERR "Bad lock file contents ($lockfile) -- still trying\n";
- } else {
- ($job, $pid, $user) = ($1, $2, $3);
- if (kill( 0, $pid ) == 0 && $! == ESRCH) {
- # process doesn't exist anymore, remove stale lock
- print STDERR "Removing stale lock file $lockfile ".
- "(job $job, pid $pid, user $user)\n";
- if (!unlink($lockfile)) {
- if ($! != ENOENT) {
- print STDERR "Cannot remove chroot lock file $lockfile: $!\n";
- exit 1;
- }
- }
- }
- }
- ++$try;
- if ($try > 120) {
- print STDERR "Lockfile $lockfile still present after " .
- 120 * 5 . " seconds -- giving up\n";
- exit 1;
- }
- print STDERR "Another sbuild process (job $job, pid $pid by user $user) is currently using the build chroot; waiting...\n"
- if $try == 1;
- sleep 5;
- goto repeat;
- } else {
- print STDERR "Can't create lock file $lockfile: $!\n";
- exit 1;
- }
- }
-
- F->print("r-bioc-limma_3.8.3-1 8530 buildd\n");
- F->close();
-
- exit 0;
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Update chroot │
-└──────────────────────────────────────────────────────────────────────────────┘
-
Hit http://ftp.uk.debian.org sid InRelease
Hit http://ftp.fr.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
+Hit http://ftp.uk.debian.org sid/main Sources/DiffIndex
Ign http://ftp.debian-ports.org unreleased InRelease
Get:1 http://incoming.debian.org Release.gpg [836 B]
-Hit http://ftp.uk.debian.org sid/main Sources/DiffIndex
-Hit http://ftp.debian-ports.org unreleased Release.gpg
Hit http://ftp.uk.debian.org sid/contrib Sources/DiffIndex
Hit http://ftp.uk.debian.org sid/non-free Sources/DiffIndex
Hit http://ftp.uk.debian.org sid/main hurd-i386 Packages/DiffIndex
-Hit http://ftp.fr.debian.org sid/main Sources/DiffIndex
-Hit http://ftp.debian-ports.org unreleased Release
Hit http://ftp.uk.debian.org sid/contrib hurd-i386 Packages/DiffIndex
Hit http://ftp.uk.debian.org sid/non-free hurd-i386 Packages/DiffIndex
Ign http://ftp.uk.debian.org sid/contrib TranslationIndex
Hit http://ftp.uk.debian.org sid/main TranslationIndex
Ign http://ftp.uk.debian.org sid/non-free TranslationIndex
-Get:2 http://incoming.debian.org Release [1604 B]
Hit http://ftp.uk.debian.org sid/main Translation-fr
+Hit http://ftp.fr.debian.org sid/main Sources/DiffIndex
+Hit http://ftp.debian-ports.org unreleased Release.gpg
+Get:2 http://incoming.debian.org Release [1604 B]
Hit http://ftp.fr.debian.org sid/contrib Sources/DiffIndex
Hit http://ftp.fr.debian.org sid/non-free Sources/DiffIndex
Hit http://ftp.fr.debian.org sid/main hurd-i386 Packages/DiffIndex
Hit http://ftp.fr.debian.org sid/contrib hurd-i386 Packages/DiffIndex
-Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
-Hit http://incoming.debian.org Sources
Hit http://ftp.fr.debian.org sid/non-free hurd-i386 Packages/DiffIndex
Ign http://ftp.fr.debian.org sid/contrib TranslationIndex
Hit http://ftp.fr.debian.org sid/main TranslationIndex
Ign http://ftp.fr.debian.org sid/non-free TranslationIndex
+Hit http://ftp.debian-ports.org unreleased Release
Ign http://ftp.uk.debian.org sid/contrib Translation-en
Ign http://ftp.uk.debian.org sid/contrib Translation-fr
Ign http://ftp.uk.debian.org sid/non-free Translation-en
-Ign http://ftp.uk.debian.org sid/non-free Translation-fr
-Hit http://incoming.debian.org Packages
Hit http://ftp.fr.debian.org sid/main Translation-fr
-Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
-Ign http://incoming.debian.org Translation-en
+Ign http://ftp.uk.debian.org sid/non-free Translation-fr
+Get:3 http://incoming.debian.org Sources [31.9 kB]
+Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
Ign http://ftp.fr.debian.org sid/contrib Translation-en
-Ign http://incoming.debian.org Translation-fr
Ign http://ftp.fr.debian.org sid/contrib Translation-fr
+Get:4 http://incoming.debian.org Packages [571 kB]
Ign http://ftp.fr.debian.org sid/non-free Translation-en
+Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
Ign http://ftp.fr.debian.org sid/non-free Translation-fr
Ign http://ftp.debian-ports.org unreleased/main Translation-en
Ign http://ftp.debian-ports.org unreleased/main Translation-fr
-Fetched 2440 B in 1min 42s (24 B/s)
+Ign http://incoming.debian.org Translation-en
+Ign http://incoming.debian.org Translation-fr
+Fetched 605 kB in 1min 39s (6106 B/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -163,75 +98,99 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://ftp.uk.debian.org/debian/ sid/main r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://ftp.uk.debian.org/debian/ sid/main r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://ftp.uk.debian.org/debian/ sid/main r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 1s (538 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 3s (269 kB/s)
Download complete and in download only mode
Check arch
──────────
-Merged Build-Depends: build-essential, fakeroot
-Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-EUbGrL/apt_archive/sbuild-build-depends-core-dummy.deb'.
-gpg: WARNING: using insecure memory!
-gpg: please see http://www.gnupg.org/faq.html for more information
-OK
-Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (apt-based resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- cron adduser libsysfs2 libusb-0.1-4p
+ libcwidget3 libsigc++-2.0-0c2a
Use 'apt-get autoremove' to remove them.
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-0 upgraded, 1 newly installed, 0 to remove and 39 not upgraded.
-Need to get 0 B/716 B of archives.
-After this operation, 0 B of additional disk space will be used.
-WARNING: The following packages cannot be authenticated!
- sbuild-build-depends-core-dummy
-Authentication warning overridden.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 14643 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-dpkg-deb: building package `sbuild-build-depends-r-bioc-limma-dummy' in `/«BUILDDIR»/resolver-cLNdvj/apt_archive/sbuild-build-depends-r-bioc-limma-dummy.deb'.
-gpg: WARNING: using insecure memory!
-gpg: please see http://www.gnupg.org/faq.html for more information
-OK
+0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+Removing negative dependencies:
Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libcwidget3 libsigc++-2.0-0c2a
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install r-bioc-limma build dependencies (apt-based resolver) │
+│ Install r-bioc-limma build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
-
Extracting templates from packages: 61%Reading package lists...
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+base-files: already installed (6.4)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3+hurd.1)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (4.0.2)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.9-1)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+hurd: already installed (20110519-3)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-4)
+sed: already installed (4.2.1-9)
+sysvinit-utils: already installed (2.88dsf-13.10)
+sysvinit: already installed (2.88dsf-13.10)
+tar: already installed (1.25-2)
+bsdutils: already installed (1:2.16.2-0)
+util-linux: already installed (2.16.2-0)
+libc0.3-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-6 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.1 >= 1.13.5 is satisfied)
+hurd-dev: already installed (20110519-3)
+debhelper: already installed (8.9.8 >= 8 is satisfied)
+cdbs: missing
+r-base-dev: missing
+Using default version 2.14.0-1
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs r-base-dev
+Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- cron adduser libsysfs2 libusb-0.1-4p
+ libcwidget3 libsigc++-2.0-0c2a
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- cdbs dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
- libjpeg62 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libncurses5-dev
+ dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6
- r-base-core r-base-dev tcl8.5 tk8.5 unzip x11-common xdg-utils zip
- zlib1g-dev
+ libthai-data libthai0 libtiff4 libtinfo-dev libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1
+ libxss1 libxt6 r-base-core tcl8.5 tk8.5 unzip x11-common xdg-utils zip
Suggested packages:
devscripts curl ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp ess r-doc-info
@@ -241,37 +200,41 @@ Recommended packages:
x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
- libjpeg62 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6
- r-base-core r-base-dev sbuild-build-depends-r-bioc-limma-dummy tcl8.5 tk8.5
- unzip x11-common xdg-utils zip zlib1g-dev
-0 upgraded, 49 newly installed, 0 to remove and 39 not upgraded.
-Need to get 0 B/31.8 MB of archives.
-After this operation, 75.4 MB of additional disk space will be used.
+ libthai-data libthai0 libtiff4 libtinfo-dev libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1
+ libxss1 libxt6 r-base-core r-base-dev tcl8.5 tk8.5 unzip x11-common
+ xdg-utils zip
+0 upgraded, 48 newly installed, 0 to remove and 68 not upgraded.
+Need to get 0 B/35.9 MB of archives.
+After this operation, 74.6 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
- libdatrie1 x11-common libice6 libpixman-1-0 libxau6 libxdmcp6 libxcb1
- libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxrender1 libcairo2
- libthai-data libthai0 libxft2 libpango1.0-0 libpcrecpp0 libsm6 libxext6
- libxss1 libxt6 cdbs dpatch libblas3gf libblas-dev libbz2-dev libjpeg62
- libjpeg8 libjpeg8-dev liblapack3gf liblapack-dev libncurses5-dev libpaper1
- libpaper-utils libpcre3-dev zlib1g-dev libpng12-dev libreadline6-dev
- libreadline-dev libtiff4 zip unzip xdg-utils tcl8.5 tk8.5 r-base-core
- r-base-dev sbuild-build-depends-r-bioc-limma-dummy
-
Extracting templates from packages: 100%
+ liblzma5 libdatrie1 x11-common libice6 libpixman-1-0 libxau6 libxdmcp6
+ libxcb1 libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxrender1
+ libcairo2 libthai-data libthai0 libxft2 libpango1.0-0 libpcrecpp0 libsm6
+ libjpeg8 libtiff4 libxext6 libxss1 libxt6 cdbs dpatch libblas3gf libblas-dev
+ libbz2-dev libjpeg8-dev liblapack3gf liblapack-dev libtinfo-dev
+ libncurses5-dev libpaper1 libpaper-utils libpcre3-dev libpng12-dev
+ libreadline6-dev libreadline-dev zip unzip xdg-utils tcl8.5 tk8.5
+ r-base-core r-base-dev
+
+Extracting templates from packages: 62%
+Extracting templates from packages: 100%
Preconfiguring packages ...
Authentication warning overridden.
+Selecting previously deselected package liblzma5.
+(Reading database ... 16885 files and directories currently installed.)
+Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_hurd-i386.deb) ...
Selecting previously deselected package libdatrie1.
-(Reading database ... 14643 files and directories currently installed.)
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_hurd-i386.deb) ...
Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+8_all.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
Selecting previously deselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_hurd-i386.deb) ...
Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_hurd-i386.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_hurd-i386.deb) ...
Selecting previously deselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_hurd-i386.deb) ...
Selecting previously deselected package libxdmcp6.
@@ -279,9 +242,9 @@ Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_hurd-i386.deb) ...
Selecting previously deselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_hurd-i386.deb) ...
Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_hurd-i386.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_hurd-i386.deb) ...
Selecting previously deselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_hurd-i386.deb) ...
Selecting previously deselected package libxcb-shm0.
@@ -297,11 +260,15 @@ Unpacking libthai0 (from .../libthai0_0.1.15-2+b1_hurd-i386.deb) ...
Selecting previously deselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_hurd-i386.deb) ...
Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_hurd-i386.deb) ...
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_hurd-i386.deb) ...
Selecting previously deselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_hurd-i386.deb) ...
Selecting previously deselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_hurd-i386.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_hurd-i386.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_hurd-i386.deb) ...
Selecting previously deselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_hurd-i386.deb) ...
Selecting previously deselected package libxss1.
@@ -309,43 +276,37 @@ Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_hurd-i386.deb) ...
Selecting previously deselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_hurd-i386.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
Selecting previously deselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_hurd-i386.deb) ...
Selecting previously deselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_hurd-i386.deb) ...
Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_hurd-i386.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_hurd-i386.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_hurd-i386.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_hurd-i386.deb) ...
Selecting previously deselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_hurd-i386.deb) ...
Selecting previously deselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_hurd-i386.deb) ...
Selecting previously deselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_hurd-i386.deb) ...
+Selecting previously deselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_hurd-i386.deb) ...
Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_hurd-i386.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_hurd-i386.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_hurd-i386.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_hurd-i386.deb) ...
Selecting previously deselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_hurd-i386.deb) ...
-Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_hurd-i386.deb) ...
Selecting previously deselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_hurd-i386.deb) ...
Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_hurd-i386.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_hurd-i386.deb) ...
Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_hurd-i386.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_hurd-i386.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_hurd-i386.deb) ...
Selecting previously deselected package zip.
Unpacking zip (from .../zip_3.0-4_hurd-i386.deb) ...
Selecting previously deselected package unzip.
@@ -357,26 +318,25 @@ Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_hurd-i386.deb) ...
Selecting previously deselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_hurd-i386.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_hurd-i386.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_hurd-i386.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Selecting previously deselected package sbuild-build-depends-r-bioc-limma-dummy.
-Unpacking sbuild-build-depends-r-bioc-limma-dummy (from .../sbuild-build-depends-r-bioc-limma-dummy.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
Processing triggers for man-db ...
Processing triggers for install-info ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up x11-common (1:7.6+8) ...
+Setting up x11-common (1:7.6+9) ...
insserv: warning: script 'K01random-egd' missing LSB tags and overrides
insserv: warning: script 'random-egd' missing LSB tags and overrides
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
@@ -384,37 +344,36 @@ Setting up libcairo2 (1.10.2-6.1) ...
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2+b1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
+Setting up cdbs (0.4.99) ...
+Setting up dpatch (2.0.33) ...
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -422,20 +381,23 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up sbuild-build-depends-r-bioc-limma-dummy (0.invalid.0) ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build environment │
-└──────────────────────────────────────────────────────────────────────────────┘
-
+Setting up r-base-dev (2.14.0-1) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libcwidget3 libsigc++-2.0-0c2a
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
+Checking correctness of dependencies...
Kernel: GNU 0.3 hurd-i386 (i686-AT386)
-Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.5_4.5.3-3 g++-4.6_4.6.1-1+hurd.1 gcc-4.4_4.4.6-7 gcc-4.5_4.5.3-3 gcc-4.6_4.6.1-1+hurd.1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 hurd-dev_20110519-3 libc0.3-dev_2.13-14 libstdc++6_4.6.1-1+hurd.1 libstdc++6-4.5-dev_4.5.3-3 libstdc++6-4.6-dev_4.6.1-1+hurd.1
-Package versions: adduser_3.113 apt_0.8.15.1 apt-utils_0.8.15.1 autopoint_0.18.1.1-3 base-files_6.4 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 ca-certificates_20110502 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.0-6 cpp-4.4_4.4.6-7 cpp-4.5_4.5.3-3 cpp-4.6_4.6.1-1+hurd.1 cron_3.0pl1-118 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.6-2 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_4.0.2 deborphan_1.7.28.5 dialog_1.1-20110707-1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.15.1-1 file_5.03-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-6 g++-4.5_4.5.3-3 g++-4.6_4.6.1-1+hurd.1 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.0-6 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.6-7 gcc-4.4-base_4.4.6-7 gcc-4.5_4.5.3-3 gcc-4.5-base_4.5.3-3 gcc-4.6_4.6.1-1+hurd.1 gcc-4.6-base_4.6.1-1+hurd.1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-6 gfortran-4.6_4.6.1-1+hurd.1 git_1:1.7.5.4-1 git-man_1:1.7.5.4-1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b1 hurd_20110519-3 hurd-dev_20110519-3 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-14 libc-dev-bin_2.13-14 libc0.3_2.13-14 libc0.3-dev_2.13-14 libc0.3-xen_2.13-14 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libcurl3-gnutls_7.21.7-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdigest-sha1-perl_2.13-2 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-3 liberror-perl_0.17-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgcc1_1:4.6.1-1+hurd.1 libgcrypt11_1.4.6-9 libgdbm3_1.8.3-10 libgfortran3_4.6.1-1+hurd.1 libglib2.0-0_2.28.6-1 libglib2.0-data_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.4-2 libgomp1_4.6.1-1+hurd.1 libgpg-error0_1.10-0.3 libice6_2:1.0.7-2 libidn11_1.22-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-1 liblzma2_5.0.0-2 libmagic1_5.03-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpopt0_1.16-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpthread-stubs0_0.3-2.1+hurd.1 libpthread-stubs0-dev_0.3-2.1+hurd.1 libpwl5_0.11.2-3 libquadmath0_4.6.1-1+hurd.1 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 librtmp0_2.3-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libsasl2-modules_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.0d-3 libstdc++6_4.6.1-1+hurd.1 libstdc++6-4.5-dev_4.5.3-3 libstdc++6-4.6-dev_4.6.1-1+hurd.1 libsysfs2_2.1.0+repack-1 libtasn1-3_2.9-4 libtext-charwidth-perl_0.04-6+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2+b1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.46 netcat-traditional_1.10-39 openssl_1.0.0d-3 original-awk_2011-05-06-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-3 perl-base_5.12.4-3 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.3-1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 random-egd_0.5-0+hurd.1 readline-common_6.2-2 rsync_3.0.8-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-limma-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sgml-base_1.26+nmu1 shared-mime-info_0.90-1 sudo_1.7.2p7-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-freefont_20100919-1 type-handling_0.2.23 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.16.2-0 x11-common_1:7.6+8 xdg-utils_1.1.0~rc1-2 xml-core_0.13 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.53.20110823-3+hurd.1 dpkg-dev_1.16.1 g++-4.5_4.5.3-8 g++-4.6_4.6.1-9+hurd.1 gcc-4.4_4.4.6-10 gcc-4.5_4.5.3-8 gcc-4.6_4.6.1-9+hurd.1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 hurd-dev_20110519-3 libc0.3-dev_2.13-21 libstdc++6_4.6.1-9+hurd.1 libstdc++6-4.5-dev_4.5.3-8 libstdc++6-4.6-dev_4.6.1-9+hurd.1
+Package versions: adduser_3.113 apt_0.8.15.8 apt-utils_0.8.15.8 autopoint_0.18.1.1-4 base-files_6.4 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.53.20110823-3+hurd.1 bsd-mailx_8.1.2-0.20100314cvs-1 bsdmainutils_8.2.3 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-7 ca-certificates_20110502+nmu1 cdbs_0.4.99 coreutils_8.5-1 cpp_4:4.6.1-3 cpp-4.4_4.4.6-10 cpp-4.5_4.5.3-8 cpp-4.6_4.6.1-9+hurd.1 cron_3.0pl1-118 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.6-2 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_4.0.2 deborphan_1.7.28.5 dialog_1.1-20110707-1 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.0.3 dpkg-dev_1.16.1 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 exim4-base_4.76-2+b3 exim4-config_4.76-2 exim4-daemon-light_4.76-2+b3 fakeroot_1.15.1-1 file_5.08-1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-6 g++-4.5_4.5.3-8 g++-4.6_4.6.1-9+hurd.1 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.1-3 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.6-10 gcc-4.4-base_4.4.6-10 gcc-4.5_4.5.3-8 gcc-4.5-base_4.5.3-8 gcc-4.6_4.6.1-9+hurd.1 gcc-4.6-base_4.6.1-9+hurd.1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-6 gfortran-4.6_4.6.1-9+hurd.1 git_1:1.7.6.3-1 git-man_1:1.7.6.3-1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b1 hurd_20110519-3 hurd-dev_20110519-3 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3+hurd.1 libapt-pkg-dev_0.8.15.8 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libboost-iostreams1.46.1_1.46.1-7 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc0.3_2.13-21 libc0.3-dev_2.13-21 libc0.3-xen_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-1 libcurl3-gnutls_7.21.7-3 libcwidget3_0.5.16-3.1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdigest-sha1-perl_2.13-2 libdpkg-perl_1.16.1 libelfg0_0.8.13-3 libept-dev_1.0.5 libept1_1.0.5 liberror-perl_0.17-1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgcc1_1:4.6.1-9+hurd.1 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgfortran3_4.6.1-9+hurd.1 libglib2.0-0_2.28.8-1 libglib2.0-data_2.28.6-1 libgmp10_2:5.0.2+dfsg-2 libgnutls26_2.12.10-2 libgomp1_4.6.1-9+hurd.1 libgpg-error0_1.10-1 libice6_2:1.0.7-2 libidn11_1.22-3 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-3 liblockfile-bin_1.09-3 liblockfile1_1.09-3 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.08-1 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libncursesw5_5.9-2 libp11-kit0_0.7-2 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpopt0_1.16-1 libpthread-stubs0_0.3-2.1+hurd.1 libpthread-stubs0-dev_0.3-2.1+hurd.1 libquadmath0_4.6.1-9+hurd.1 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 librtmp0_2.4~20110711.gitc28f1bab-1 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-6 libsasl2-modules_2.1.24~rc1.dfsg1+cvs2011-05-23-6 libsigc++-2.0-0c2a_2.2.9-1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.0e-2 libstdc++6_4.6.1-9+hurd.1 libstdc++6-4.5-dev_4.5.3-8 libstdc++6-4.6-dev_4.6.1-9+hurd.1 libsysfs2_2.1.0+repack-1 libtagcoll2-dev_2.0.13-1 libtasn1-3_2.10-1 libtext-charwidth-perl_0.04-6+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2+b1 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-4 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.19.1-5 libwibble-dev_0.1.26-1 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxapian-dev_1.2.7-1 libxapian22_1.2.7-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-2 netbase_4.46 netcat-traditional_1.10-39 openssl_1.0.0e-2 original-awk_2011-05-06-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 pkg-config_0.26-1 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.3-1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 random-egd_0.5-0+hurd.1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sgml-base_1.26+nmu1 shared-mime-info_0.90-1 sudo_1.7.2p7-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-bitstream-vera_1.10-8 ttf-freefont_20100919-1 type-handling_0.2.23 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.16.2-0 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xml-core_0.13 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -446,46 +408,28 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
-Sufficient free space for build
-
-User Environment
-────────────────
-
-HOME=/home/buildd
-LOGNAME=buildd
-OLDPWD=/
-PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin
-PWD=/«PKGBUILDDIR»
-SHELL=/bin/sh
-SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env'
-SUDO_GID=107
-SUDO_UID=60000
-SUDO_USER=buildd
-TERM=rxvt-unicode
-USER=buildd
-USERNAME=root
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS =
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS = -Wl,-z,relro
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture hurd-i386
/usr/bin/fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -493,9 +437,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«PKGBUILDDIR»'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -506,20 +450,20 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
- debian/rules build
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
+ debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«PKGBUILDDIR»'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -528,9 +472,9 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
/usr/bin/fakeroot debian/rules binary-arch
-make[1]: Entering directory `/«PKGBUILDDIR»'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -540,43 +484,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/«PKGBUILDDIR»/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/«PKGBUILDDIR»/src'
-make[1]: Entering directory `/«PKGBUILDDIR»/src'
-installing to /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
-make[1]: Leaving directory `/«PKGBUILDDIR»/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/src'
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«PKGBUILDDIR»/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«PKGBUILDDIR»/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -608,70 +554,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_hurd-i386.deb'.
- dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org> >../r-bioc-limma_3.8.3-1_hurd-i386.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_hurd-i386.deb'.
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org> >../r-bioc-limma_3.10.0-1_hurd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110816-0840
-
-Finished
-────────
-
-I: Built successfully
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Changes │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-r-bioc-limma_3.8.3-1_hurd-i386.changes:
-───────────────────────────────────────
+Build finished at 20111104-0617
+r-bioc-limma_3.10.0-1_hurd-i386.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: hurd-i386
-Version: 3.8.3-1
-Distribution: sid
+Version: 3.10.0-1
+Distribution: unstable
Urgency: low
Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- 2d927e99e2e02854ccbb64e57e1bfdf704ee5cdc 1396070 r-bioc-limma_3.8.3-1_hurd-i386.deb
+ 9a2889bc56903253e3155fbb9086f69ab7f994fb 1470658 r-bioc-limma_3.10.0-1_hurd-i386.deb
Checksums-Sha256:
- 3460d65d413c5a876ccb75587bbf4e353556b9279bf759339f76a0a3f60c1c46 1396070 r-bioc-limma_3.8.3-1_hurd-i386.deb
+ 4f13464cbc4b61e95b0fd657b635b03dbca5b89c8727c97cd13eea2338e4a18c 1470658 r-bioc-limma_3.10.0-1_hurd-i386.deb
Files:
- acd513bc6b34adbc53a87a00d2bd4670 1396070 gnu-r optional r-bioc-limma_3.8.3-1_hurd-i386.deb
+ ee367ab0ab21913d6b3b48a9d67acd04 1470658 gnu-r optional r-bioc-limma_3.10.0-1_hurd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_hurd-i386.deb
-──────────────────────────────────
+r-bioc-limma_3.10.0-1_hurd-i386.deb
+───────────────────────────────────
new debian package, version 2.0.
- size 1396070 bytes: control archive= 1519 bytes.
- 775 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1470658 bytes: control archive= 1549 bytes.
+ 776 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: hurd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1668
- Depends: libc0.3 (>= 2.2.6), r-base-core (>= 2.13.1~)
+ Installed-Size: 1673
+ Depends: libc0.3 (>= 2.2.6), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -683,89 +617,90 @@ r-bioc-limma_3.8.3-1_hurd-i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-08-16 08:39 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 997 2011-08-16 08:39 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1044 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5947 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5524 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2854 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 505 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-08-16 08:40 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8120 2011-08-16 08:40 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-08-16 08:39 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 173259 2011-08-16 08:39 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3744 2011-08-16 08:39 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 84899 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 45616 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 687780 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-08-16 08:39 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1302 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 446212 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3267 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2363 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-08-16 08:39 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-08-16 08:39 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9360 2011-08-16 08:39 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-16 08:40 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2117 2011-08-16 08:37 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 234 2011-08-16 08:37 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 06:15 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 06:15 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1901 2011-11-04 06:15 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 958 2011-11-04 06:15 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1045 2011-11-04 06:15 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6023 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5603 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 216 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2011-11-04 06:16 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8120 2011-11-04 06:16 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-11-04 06:15 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-11-04 06:15 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197382 2011-11-04 06:15 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3783 2011-11-04 06:15 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 87742 2011-11-04 06:15 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-11-04 06:15 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-11-04 06:15 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2011-11-04 06:15 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 737661 2011-11-04 06:15 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-11-04 06:15 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 1984 2011-11-04 06:15 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1354 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 456657 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3277 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6221 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2011-11-04 06:16 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2011-11-04 06:16 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-04 06:16 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9458 2011-11-04 06:16 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 06:16 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2118 2011-11-04 06:14 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 329 2011-11-04 06:14 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
+│ Finished │
└──────────────────────────────────────────────────────────────────────────────┘
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Cleanup │
+│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«BUILDDIR»
+Purging /home/buildd/build/chroot-unstable/build/buildd-r-bioc-limma_3.10.0-1-hurd-i386-4knbS1
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- cron adduser libsysfs2 libusb-0.1-4p
+ libcwidget3 libsigc++-2.0-0c2a
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 39 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 68 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- cron adduser libsysfs2 libusb-0.1-4p
+ libcwidget3 libsigc++-2.0-0c2a
Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
cdbs* dpatch* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libdatrie1*
- libice6* libjpeg62* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
+ libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf* liblzma5*
libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev*
libpcrecpp0* libpixman-1-0* libpng12-dev* libreadline-dev* libreadline6-dev*
- libsm6* libthai-data* libthai0* libtiff4* libx11-6* libx11-data* libxau6*
- libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
- libxrender1* libxss1* libxt6* r-base-core* r-base-dev*
- sbuild-build-depends-core-dummy* sbuild-build-depends-r-bioc-limma-dummy*
- tcl8.5* tk8.5* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 50 to remove and 39 not upgraded.
-After this operation, 75.4 MB disk space will be freed.
-(Reading database ... 17107 files and directories currently installed.)
-Removing sbuild-build-depends-r-bioc-limma-dummy ...
+ libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev* libx11-6*
+ libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
+ libxext6* libxft2* libxrender1* libxss1* libxt6* r-base-core* r-base-dev*
+ tcl8.5* tk8.5* unzip* x11-common* xdg-utils* zip*
+0 upgraded, 0 newly installed, 48 to remove and 68 not upgraded.
+After this operation, 74.6 MB disk space will be freed.
+(Reading database ... 19383 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing dpatch ...
@@ -773,8 +708,8 @@ Purging configuration files for dpatch ...
Removing liblapack-dev ...
Removing libblas-dev ...
Removing r-base-core ...
-dpkg: warning: while removing r-base-core, directory '/etc/R' not empty so not removed.
Purging configuration files for r-base-core ...
+dpkg: warning: while removing r-base-core, directory '/etc/R' not empty so not removed.
Removing liblapack3gf ...
Purging configuration files for liblapack3gf ...
Removing libblas3gf ...
@@ -796,11 +731,10 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62 ...
Removing libjpeg8-dev ...
Removing libjpeg8 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
+Removing liblzma5 ...
+Purging configuration files for liblzma5 ...
Removing libncurses5-dev ...
Removing libpaper-utils ...
Removing libpaper1 ...
@@ -811,7 +745,10 @@ Purging configuration files for libpcrecpp0 ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
Removing libpng12-dev ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
Removing libthai-data ...
+Removing libtinfo-dev ...
Removing tk8.5 ...
Purging configuration files for tk8.5 ...
Removing libxft2 ...
@@ -835,7 +772,6 @@ Removing libxau6 ...
Purging configuration files for libxau6 ...
Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
-Removing sbuild-build-depends-core-dummy ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing unzip ...
@@ -851,7 +787,6 @@ insserv: warning: script 'random-egd' missing LSB tags and overrides
dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
-Removing zlib1g-dev ...
Processing triggers for man-db ...
Processing triggers for install-info ...
@@ -860,17 +795,18 @@ Processing triggers for install-info ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: hurd-i386
-Build-Space: 5068
-Build-Time: 168
-Distribution: sid
-Install-Time: 285
-Job: r-bioc-limma_3.8.3-1
+Build-Space: 5304
+Build-Time: 159
+Distribution: unstable
+Install-Time: 162
+Job: r-bioc-limma_3.10.0-1
Package: r-bioc-limma
-Package-Time: 579
-Source-Version: 3.8.3-1
-Space: 5068
+Package-Time: 461
+Source-Version: 3.10.0-1
+Space: 5304
Status: successful
-Version: 3.8.3-1
+Version: 3.10.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110816-0840
-Build needed 00:09:39, 5068k disc space
+Finished at 20111104-0617
+Build needed 00:07:41, 5304k disc space
+
diff --git a/i386.log b/i386.log
index 2504cd6..31b14d7 100644
--- a/i386.log
+++ b/i386.log
@@ -1,68 +1,73 @@
-From buildd at biber.debian.org Sun Aug 14 12:38:09 2011
-Return-path: <buildd at biber.debian.org>
+From buildd at murphy.debian.org Fri Nov 04 05:42:29 2011
+Return-path: <buildd at murphy.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at biber.debian.org>)
- id 1QsZxA-0000vg-Lh
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:38:08 +0000
-Received: from biber.debian.org ([2001:648:2ffc:deb:214:22ff:feb2:1268])
+ (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
+ id 1RMCXt-0006wU-Bn
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 05:42:29 +0000
+Received: from murphy.debian.org ([70.103.162.31])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=biber.debian.org, EMAIL=hostmaster at biber.debian.org (verified)
+ CN=murphy.debian.org, EMAIL=hostmaster at murphy.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at biber.debian.org>)
- id 1QsZx9-0006dh-5D; Sun, 14 Aug 2011 12:38:07 +0000
-Received: from buildd by biber.debian.org with local (Exim 4.72)
- (envelope-from <buildd at biber.debian.org>)
- id 1QsZx7-0002e2-RQ; Sun, 14 Aug 2011 12:38:05 +0000
-Message-Id: <E1QsZx7-0002e2-RQ at biber.debian.org>
+ (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
+ id 1RMCXr-0007LC-If
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 05:42:27 +0000
+Received: from buildd by murphy.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at murphy.debian.org>)
+ id 1RMCXp-0002rU-Ph; Fri, 04 Nov 2011 05:42:25 +0000
+Message-Id: <E1RMCXp-0002rU-Ph at murphy.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 14 Aug 2011 12:38:05 +0000
-From: buildd on biber <buildd at biber.debian.org>
-To: kurt at roeckx.be,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on i386 (dist=sid)
-Key-Id: E4786BDC
+Date: Fri, 4 Nov 2011 05:42:25 +0000
+From: buildd on murphy <buildd at murphy.debian.org>
+To: logs at buildd.debian.org,buildd-admin at murphy.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on i386 (dist=sid)
+Key-Id: B074D6C9
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on biber.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on murphy.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (i386) 14 Aug 2011 12:35 ║
+║ r-bioc-limma 3.10.0-1 (i386) 04 Nov 2011 05:38 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
+Source Version: 3.10.0-1
Architecture: i386
-Get:1 http://ftp.gr.debian.org unstable InRelease [146 kB]
-Get:2 http://ftp.gr.debian.org unstable/main Sources [5431 kB]
-Get:3 http://incoming.debian.org unstable InRelease [146 kB]
-Get:4 http://ftp.gr.debian.org unstable/contrib Sources [52.5 kB]
-Get:5 http://ftp.gr.debian.org unstable/non-free Sources [95.7 kB]
-Get:6 http://ftp.gr.debian.org unstable/main i386 Packages [7599 kB]
-Get:7 http://ftp.gr.debian.org unstable/contrib i386 Packages [68.2 kB]
-Ign http://ftp.gr.debian.org unstable/contrib TranslationIndex
-Get:8 http://ftp.gr.debian.org unstable/main TranslationIndex [2185 B]
-Ign http://ftp.gr.debian.org unstable/contrib Translation-en
+Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Get:9 http://incoming.debian.org Release.gpg [836 B]
-Get:10 http://incoming.debian.org unstable/main Sources [5431 kB]
-Get:11 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
-Get:13 http://incoming.debian.org unstable/main i386 Packages [7599 kB]
-Get:14 http://incoming.debian.org unstable/contrib i386 Packages [68.2 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
-Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [24.6 kB]
-Get:18 http://incoming.debian.org Packages [108 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Get:2 http://ftp.us.debian.org sid InRelease [146 kB]
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main i386 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib i386 Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Get:3 http://incoming.debian.org Release [1604 B]
+Get:4 http://ftp.us.debian.org sid/main Sources/DiffIndex [2038 B]
+Get:5 http://incoming.debian.org Sources [31.6 kB]
+Get:6 http://incoming.debian.org Packages [571 kB]
+Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
+Get:7 http://ftp.us.debian.org sid/main i386 Packages/DiffIndex [2038 B]
+Get:8 http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex [2023 B]
+Ign http://ftp.us.debian.org sid/contrib TranslationIndex
+Get:9 http://ftp.us.debian.org sid/main TranslationIndex [2045 B]
+Get:10 http://ftp.us.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
+Ign http://incoming.debian.org sid/contrib Translation-en
+Get:11 http://ftp.us.debian.org sid/main i386 2011-11-04-0214.23.pdiff [27.0 kB]
+Get:12 http://ftp.us.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
Ign http://incoming.debian.org Translation-en
-Fetched 26.9 MB in 13s (1980 kB/s)
+Get:13 http://ftp.us.debian.org sid/contrib i386 2011-11-04-0214.23.pdiff [271 B]
+Ign http://ftp.us.debian.org sid/contrib Translation-en
+Get:14 http://ftp.us.debian.org sid/main i386 2011-11-04-0214.23.pdiff [27.0 kB]
+Get:15 http://ftp.us.debian.org sid/contrib i386 2011-11-04-0214.23.pdiff [271 B]
+Fetched 797 kB in 7s (102 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,11 +88,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 1s (482 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 2s (335 kB/s)
Download complete and in download only mode
Check arch
@@ -101,18 +106,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -124,62 +129,65 @@ Checking for already installed dependencies...
base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-4)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
bsdutils: already installed (1:2.19.1-5)
mount: already installed (2.19.1-5)
util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-16)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 libreadline-dev
+ libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
+ libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath0-dbg
+ libmudflap0-dbg binutils-gold gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -188,286 +196,259 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 49.7 MB of archives.
-After this operation, 122 MB of additional disk space will be used.
-Get:1 http://ftp.gr.debian.org/debian/ unstable/main libpipeline1 i386 1.2.0-3 [37.6 kB]
-Get:2 http://ftp.gr.debian.org/debian/ unstable/main libpcre3 i386 8.12-4 [223 kB]
-Get:3 http://ftp.gr.debian.org/debian/ unstable/main libdatrie1 i386 0.2.4-3 [28.6 kB]
-Get:4 http://ftp.gr.debian.org/debian/ unstable/main libexpat1 i386 2.0.1-7 [138 kB]
-Get:5 http://ftp.gr.debian.org/debian/ unstable/main libfreetype6 i386 2.4.6-1 [437 kB]
-Get:6 http://ftp.gr.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:7 http://ftp.gr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:8 http://ftp.gr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:9 http://ftp.gr.debian.org/debian/ unstable/main libfontconfig1 i386 2.8.0-3 [285 kB]
-Get:10 http://ftp.gr.debian.org/debian/ unstable/main libgfortran3 i386 4.6.1-6 [355 kB]
-Get:11 http://ftp.gr.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:12 http://ftp.gr.debian.org/debian/ unstable/main libice6 i386 2:1.0.7-2 [55.2 kB]
-Get:13 http://ftp.gr.debian.org/debian/ unstable/main libpixman-1-0 i386 0.22.2-1 [371 kB]
-Get:14 http://ftp.gr.debian.org/debian/ unstable/main libpng12-0 i386 1.2.46-3 [192 kB]
-Get:15 http://ftp.gr.debian.org/debian/ unstable/main libxau6 i386 1:1.0.6-3 [16.9 kB]
-Get:16 http://ftp.gr.debian.org/debian/ unstable/main libxdmcp6 i386 1:1.1.0-3 [23.3 kB]
-Get:17 http://ftp.gr.debian.org/debian/ unstable/main libxcb1 i386 1.7-3 [48.8 kB]
-Get:18 http://ftp.gr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:19 http://ftp.gr.debian.org/debian/ unstable/main libx11-6 i386 2:1.4.4-1 [895 kB]
-Get:20 http://ftp.gr.debian.org/debian/ unstable/main libxcb-render0 i386 1.7-3 [17.3 kB]
-Get:21 http://ftp.gr.debian.org/debian/ unstable/main libxcb-shm0 i386 1.7-3 [9572 B]
-Get:22 http://ftp.gr.debian.org/debian/ unstable/main libxrender1 i386 1:0.9.6-2 [31.1 kB]
-Get:23 http://ftp.gr.debian.org/debian/ unstable/main libcairo2 i386 1.10.2-6.1 [971 kB]
-Get:24 http://ftp.gr.debian.org/debian/ unstable/main libglib2.0-0 i386 2.28.6-1 [1503 kB]
-Get:25 http://ftp.gr.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:26 http://ftp.gr.debian.org/debian/ unstable/main libthai0 i386 0.1.15-2 [43.3 kB]
-Get:27 http://ftp.gr.debian.org/debian/ unstable/main libxft2 i386 2.2.0-3 [58.4 kB]
-Get:28 http://ftp.gr.debian.org/debian/ unstable/main fontconfig i386 2.8.0-3 [335 kB]
-Get:29 http://ftp.gr.debian.org/debian/ unstable/main libpango1.0-0 i386 1.28.4-2 [439 kB]
-Get:30 http://ftp.gr.debian.org/debian/ unstable/main libpcrecpp0 i386 8.12-4 [113 kB]
-Get:31 http://ftp.gr.debian.org/debian/ unstable/main libsm6 i386 2:1.2.0-2 [29.1 kB]
-Get:32 http://ftp.gr.debian.org/debian/ unstable/main libxext6 i386 2:1.3.0-3 [52.4 kB]
-Get:33 http://ftp.gr.debian.org/debian/ unstable/main libxss1 i386 1:1.2.1-2 [16.7 kB]
-Get:34 http://ftp.gr.debian.org/debian/ unstable/main libxt6 i386 1:1.1.1-2 [200 kB]
-Get:35 http://ftp.gr.debian.org/debian/ unstable/main bsdmainutils i386 8.2.3 [203 kB]
-Get:36 http://ftp.gr.debian.org/debian/ unstable/main groff-base i386 1.21-6 [1127 kB]
-Get:37 http://ftp.gr.debian.org/debian/ unstable/main man-db i386 2.6.0.2-2 [1013 kB]
-Get:38 http://ftp.gr.debian.org/debian/ unstable/main libmagic1 i386 5.04-5+b1 [233 kB]
-Get:39 http://ftp.gr.debian.org/debian/ unstable/main file i386 5.04-5+b1 [49.4 kB]
-Get:40 http://ftp.gr.debian.org/debian/ unstable/main gettext-base i386 0.18.1.1-4 [133 kB]
-Get:41 http://ftp.gr.debian.org/debian/ unstable/main libxml2 i386 2.7.8.dfsg-4 [882 kB]
-Get:42 http://ftp.gr.debian.org/debian/ unstable/main html2text i386 1.3.2a-15 [101 kB]
-Get:43 http://ftp.gr.debian.org/debian/ unstable/main libcroco3 i386 0.6.2-1 [116 kB]
-Get:44 http://ftp.gr.debian.org/debian/ unstable/main libunistring0 i386 0.9.3-4 [431 kB]
-Get:45 http://ftp.gr.debian.org/debian/ unstable/main gettext i386 0.18.1.1-4 [2024 kB]
-Get:46 http://ftp.gr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:47 http://ftp.gr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:48 http://ftp.gr.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
-Get:49 http://ftp.gr.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:50 http://ftp.gr.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:51 http://ftp.gr.debian.org/debian/ unstable/main gfortran-4.6 i386 4.6.1-6 [5350 kB]
-Get:52 http://ftp.gr.debian.org/debian/ unstable/main gfortran i386 4:4.6.1-2 [1124 B]
-Get:53 http://ftp.gr.debian.org/debian/ unstable/main libblas3gf i386 1.2.20110419-2 [210 kB]
-Get:54 http://ftp.gr.debian.org/debian/ unstable/main libblas-dev i386 1.2.20110419-2 [212 kB]
-Get:55 http://ftp.gr.debian.org/debian/ unstable/main libbz2-dev i386 1.0.5-6 [31.6 kB]
-Get:56 http://ftp.gr.debian.org/debian/ unstable/main libjpeg62 i386 6b1-2 [93.7 kB]
-Get:57 http://ftp.gr.debian.org/debian/ unstable/main libjpeg8 i386 8c-2 [131 kB]
-Get:58 http://ftp.gr.debian.org/debian/ unstable/main libjpeg8-dev i386 8c-2 [231 kB]
-Get:59 http://ftp.gr.debian.org/debian/ unstable/main liblapack3gf i386 3.3.1-1 [3245 kB]
-Get:60 http://ftp.gr.debian.org/debian/ unstable/main liblapack-dev i386 3.3.1-1 [3485 kB]
-Get:61 http://ftp.gr.debian.org/debian/ unstable/main libncurses5-dev i386 5.9-1 [467 kB]
-Get:62 http://ftp.gr.debian.org/debian/ unstable/main libpaper1 i386 1.1.24+nmu1 [21.6 kB]
-Get:63 http://ftp.gr.debian.org/debian/ unstable/main libpaper-utils i386 1.1.24+nmu1 [17.9 kB]
-Get:64 http://ftp.gr.debian.org/debian/ unstable/main libpcre3-dev i386 8.12-4 [303 kB]
-Get:65 http://ftp.gr.debian.org/debian/ unstable/main zlib1g-dev i386 1:1.2.3.4.dfsg-3 [186 kB]
-Get:66 http://ftp.gr.debian.org/debian/ unstable/main libpng12-dev i386 1.2.46-3 [265 kB]
-Get:67 http://ftp.gr.debian.org/debian/ unstable/main libreadline6-dev i386 6.2-2 [247 kB]
-Get:68 http://ftp.gr.debian.org/debian/ unstable/main libreadline-dev i386 6.2-2 [878 B]
-Get:69 http://ftp.gr.debian.org/debian/ unstable/main libtiff4 i386 3.9.5-1 [187 kB]
-Get:70 http://ftp.gr.debian.org/debian/ unstable/main zip i386 3.0-4 [327 kB]
-Get:71 http://ftp.gr.debian.org/debian/ unstable/main unzip i386 6.0-5 [183 kB]
-Get:72 http://ftp.gr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:73 http://ftp.gr.debian.org/debian/ unstable/main tcl8.5 i386 8.5.10-1 [1637 kB]
-Get:74 http://ftp.gr.debian.org/debian/ unstable/main tk8.5 i386 8.5.10-1 [1178 kB]
-Get:75 http://ftp.gr.debian.org/debian/ unstable/main r-base-core i386 2.13.1-1 [14.9 MB]
-Get:76 http://ftp.gr.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0
+ libstdc++6 libstdc++6-4.6-dev
+9 upgraded, 76 newly installed, 0 to remove and 6 not upgraded.
+Need to get 45.8 MB/75.1 MB of archives.
+After this operation, 120 MB of additional disk space will be used.
+Get:1 http://ftp.us.debian.org/debian/ sid/main libgomp1 i386 4.6.2-4 [27.3 kB]
+Get:2 http://ftp.us.debian.org/debian/ sid/main gcc-4.6-base i386 4.6.2-4 [136 kB]
+Get:3 http://ftp.us.debian.org/debian/ sid/main libgcc1 i386 1:4.6.2-4 [54.2 kB]
+Get:4 http://ftp.us.debian.org/debian/ sid/main cpp-4.6 i386 4.6.2-4 [4646 kB]
+Get:5 http://ftp.us.debian.org/debian/ sid/main libquadmath0 i386 4.6.2-4 [195 kB]
+Get:6 http://ftp.us.debian.org/debian/ sid/main libstdc++6-4.6-dev i386 4.6.2-4 [1643 kB]
+Get:7 http://ftp.us.debian.org/debian/ sid/main g++-4.6 i386 4.6.2-4 [6779 kB]
+Get:8 http://ftp.us.debian.org/debian/ sid/main gcc-4.6 i386 4.6.2-4 [7317 kB]
+Get:9 http://ftp.us.debian.org/debian/ sid/main libstdc++6 i386 4.6.2-4 [344 kB]
+Get:10 http://ftp.us.debian.org/debian/ sid/main libgfortran3 i386 4.6.2-4 [355 kB]
+Get:11 http://ftp.us.debian.org/debian/ sid/main gfortran-4.6 i386 4.6.2-4 [5352 kB]
+Get:12 http://ftp.us.debian.org/debian/ sid/main r-base-core i386 2.14.0-1 [18.9 MB]
+Get:13 http://ftp.us.debian.org/debian/ sid/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 49.7 MB in 4s (10.3 MB/s)
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10725 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_i386.deb) ...
-Selecting previously deselected package libpcre3.
+Fetched 45.8 MB in 2min 41s (283 kB/s)
+(Reading database ... 10684 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.2-3 (using .../libgomp1_4.6.2-4_i386.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.2-3 (using .../gcc-4.6-base_4.6.2-4_i386.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.2-4) ...
+(Reading database ... 10684 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.2-3 (using .../libgcc1_1%3a4.6.2-4_i386.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.2-4) ...
+(Reading database ... 10684 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.2-3 (using .../cpp-4.6_4.6.2-4_i386.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libquadmath0 4.6.2-3 (using .../libquadmath0_4.6.2-4_i386.deb) ...
+Unpacking replacement libquadmath0 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.2-3 (using .../libstdc++6-4.6-dev_4.6.2-4_i386.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.2-3 (using .../g++-4.6_4.6.2-4_i386.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.2-3 (using .../gcc-4.6_4.6.2-4_i386.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.2-3 (using .../libstdc++6_4.6.2-4_i386.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.2-4) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10684 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_i386.deb) ...
+Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_i386.deb) ...
-Selecting previously deselected package libdatrie1.
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_i386.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_i386.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_i386.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_i386.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_i386.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_i386.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_i386.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_i386.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_i386.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_i386.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-4_i386.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_i386.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_i386.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_i386.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_i386.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_i386.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_i386.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_i386.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_i386.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_i386.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_i386.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_i386.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_i386.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_i386.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_i386.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_i386.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_i386.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_i386.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_i386.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_i386.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_i386.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_i386.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_i386.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_i386.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_i386.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_i386.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_i386.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_i386.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_i386.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_i386.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_i386.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_i386.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_i386.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_i386.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_i386.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_i386.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_i386.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_i386.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_i386.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_i386.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_i386.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-4_i386.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_i386.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_i386.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_i386.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_i386.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_i386.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_i386.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_i386.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_i386.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_i386.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_i386.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_i386.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_i386.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_i386.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_i386.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_i386.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_i386.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_i386.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_i386.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_i386.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_i386.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_i386.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_i386.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_i386.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_i386.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_i386.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_i386.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_i386.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_i386.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_i386.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-4) ...
+Setting up cpp-4.6 (4.6.2-4) ...
+Setting up libquadmath0 (4.6.2-4) ...
+Setting up gcc-4.6 (4.6.2-4) ...
+Setting up libpipeline1 (1.2.0-4) ...
Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-6) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-4) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
@@ -477,35 +458,31 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-6) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-4) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -513,9 +490,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -523,20 +499,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-4) ...
+Setting up g++-4.6 (4.6.2-4) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-amd64 i386 (x86_64)
-Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc6_2.13-16 libc6-dev_2.13-16 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-6 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.32-5-686-bigmem i386 (i686)
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-4 gcc-4.6_4.6.2-4 libc6-dev_2.13-21 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-4 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-4 gcc_4:4.6.1-3 gcc-4.6_4.6.2-4 gcc-4.6-base_4.6.2-4 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-4 libgdbm3_1.8.3-10 libgfortran3_4.6.2-4 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-4 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.2-4 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -547,12 +525,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -561,14 +539,9 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture i386
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -576,9 +549,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -599,20 +572,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
+
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
+
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -623,43 +596,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/src'
-installing to /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -691,58 +666,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_i386.deb'.
- dpkg-genchanges -B -mi386 Build Daemon <buildd_i386-biber at buildd.debian.org> >../r-bioc-limma_3.8.3-1_i386.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../r-bioc-limma_3.10.0-1_i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110814-1238
+Build finished at 20111104-0542
-r-bioc-limma_3.8.3-1_i386.changes:
+r-bioc-limma_3.10.0-1_i386.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: i386
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
-Maintainer: i386 Build Daemon <buildd_i386-biber at buildd.debian.org>
+Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- 61296e6fa6897e77040e22bfde136453f07769aa 1398798 r-bioc-limma_3.8.3-1_i386.deb
+ bc452bf703eca14d99037e3e0cd082cf9ec343dc 1470036 r-bioc-limma_3.10.0-1_i386.deb
Checksums-Sha256:
- c8510b6fa5234bb4835cc356703bae4c8074075af539e8a6da87dfd60e66e30a 1398798 r-bioc-limma_3.8.3-1_i386.deb
+ c950131c56a0b67c627fc396ef5edbe062ffc87e86a1fff6cc63f17e7420a284 1470036 r-bioc-limma_3.10.0-1_i386.deb
Files:
- 14dc517a19a74c5fcbf7763184cd27e6 1398798 gnu-r optional r-bioc-limma_3.8.3-1_i386.deb
+ ee767a787bd5febf12fe327ed51f3fae 1470036 gnu-r optional r-bioc-limma_3.10.0-1_i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_i386.deb
-─────────────────────────────
+r-bioc-limma_3.10.0-1_i386.deb
+──────────────────────────────
new debian package, version 2.0.
- size 1398798 bytes: control archive= 1506 bytes.
- 768 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1470036 bytes: control archive= 1535 bytes.
+ 769 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 1672
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.1~)
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -754,50 +729,51 @@ r-bioc-limma_3.8.3-1_i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 217 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 2854 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5947 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5524 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 505 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 1048 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 1872 2011-08-14 12:37 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 687780 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 84899 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 45616 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 1711 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 1003 2011-08-14 12:37 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-14 12:38 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8120 2011-08-14 12:38 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1337 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 450115 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3255 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2363 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 9360 2011-08-14 12:37 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-08-14 12:37 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34039 2011-08-14 12:37 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-08-14 12:37 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 173274 2011-08-14 12:37 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3746 2011-08-14 12:37 ./usr/lib/R/site-library/limma/R/limma.rdx
--rwxr-xr-x root/root 1230 2011-08-14 12:37 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-14 12:38 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 234 2011-08-14 12:37 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2117 2011-08-14 12:37 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9458 2011-11-04 05:42 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-11-04 05:42 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2011-11-04 05:42 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1901 2011-11-04 05:42 ./usr/lib/R/site-library/limma/NAMESPACE
+-rwxr-xr-x root/root 1230 2011-11-04 05:42 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8120 2011-11-04 05:42 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 197381 2011-11-04 05:42 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 383 2011-11-04 05:42 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3785 2011-11-04 05:42 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 1984 2011-11-04 05:42 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2392 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 455544 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 6221 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1350 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 3270 2011-11-04 05:42 ./usr/lib/R/site-library/limma/help/limma.rdx
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 42743 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 87742 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 737661 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1711 2011-11-04 05:42 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1049 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 216 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 6023 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 2886 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5603 2011-11-04 05:42 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 964 2011-11-04 05:42 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 05:42 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 329 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2118 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -811,26 +787,175 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-i386-sbuild-c610d6f5-a759-43c2-96f9-9755ff325fb0/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1
-Not cleaning session: cloned chroot in use
+Purging /var/lib/schroot/mount/sid-i386-sbuild-fa1836a3-2e66-4f74-b464-e8d905068a76/build/buildd-r-bioc-limma_3.10.0-1-i386-1Fr5To
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages will be REMOVED:
+ bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
+ gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
+ intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
+ libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
+ libglib2.0-0* libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
+ libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
+ libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
+ libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
+ libthai-data* libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6*
+ libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
+ libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db*
+ po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf*
+ unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 76 to remove and 6 not upgraded.
+After this operation, 120 MB disk space will be freed.
+(Reading database ... 14696 files and directories currently installed.)
+Removing debhelper ...
+Removing man-db ...
+Purging configuration files for man-db ...
+Removing bsdmainutils ...
+Purging configuration files for bsdmainutils ...
+Removing r-base-dev ...
+Removing cdbs ...
+Removing dpatch ...
+Purging configuration files for dpatch ...
+Removing file ...
+Removing r-base-core ...
+Purging configuration files for r-base-core ...
+Removing libpango1.0-0 ...
+Purging configuration files for libpango1.0-0 ...
+Removing fontconfig ...
+Purging configuration files for fontconfig ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing libxft2 ...
+Purging configuration files for libxft2 ...
+Removing libcairo2 ...
+Purging configuration files for libcairo2 ...
+Removing libfontconfig1 ...
+Purging configuration files for libfontconfig1 ...
+Removing fontconfig-config ...
+Purging configuration files for fontconfig-config ...
+Removing po-debconf ...
+Removing intltool-debian ...
+Removing gettext ...
+Removing gettext-base ...
+Removing gfortran ...
+Removing gfortran-4.6 ...
+Removing groff-base ...
+Purging configuration files for groff-base ...
+Removing html2text ...
+Purging configuration files for html2text ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
+Removing liblapack3gf ...
+Purging configuration files for liblapack3gf ...
+Removing libblas3gf ...
+Purging configuration files for libblas3gf ...
+Removing libbz2-dev ...
+Removing libcroco3 ...
+Purging configuration files for libcroco3 ...
+Removing libthai0 ...
+Purging configuration files for libthai0 ...
+Removing libdatrie1 ...
+Purging configuration files for libdatrie1 ...
+Removing libexpat1 ...
+Purging configuration files for libexpat1 ...
+Removing libfreetype6 ...
+Purging configuration files for libfreetype6 ...
+Removing libgfortran3 ...
+Purging configuration files for libgfortran3 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing libxt6 ...
+Purging configuration files for libxt6 ...
+Removing libsm6 ...
+Purging configuration files for libsm6 ...
+Removing libice6 ...
+Purging configuration files for libice6 ...
+Removing libtiff4 ...
+Purging configuration files for libtiff4 ...
+Removing libjpeg8-dev ...
+Removing libjpeg8 ...
+Removing libmagic1 ...
+Purging configuration files for libmagic1 ...
+Removing libncurses5-dev ...
+Removing libpaper-utils ...
+Removing libpaper1 ...
+Purging configuration files for libpaper1 ...
+Removing libpcre3-dev ...
+Removing libpcrecpp0 ...
+Purging configuration files for libpcrecpp0 ...
+Removing libpcre3 ...
+Purging configuration files for libpcre3 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
+Removing libpixman-1-0 ...
+Purging configuration files for libpixman-1-0 ...
+Removing libpng12-dev ...
+Removing libpng12-0 ...
+Purging configuration files for libpng12-0 ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
+Removing libthai-data ...
+Removing libtinfo-dev ...
+Removing libunistring0 ...
+Purging configuration files for libunistring0 ...
+Removing libxss1 ...
+Purging configuration files for libxss1 ...
+Removing libxrender1 ...
+Purging configuration files for libxrender1 ...
+Removing libxext6 ...
+Purging configuration files for libxext6 ...
+Removing libx11-6 ...
+Purging configuration files for libx11-6 ...
+Removing libx11-data ...
+Removing libxcb-shm0 ...
+Purging configuration files for libxcb-shm0 ...
+Removing libxcb-render0 ...
+Purging configuration files for libxcb-render0 ...
+Removing libxcb1 ...
+Purging configuration files for libxcb1 ...
+Removing libxau6 ...
+Purging configuration files for libxau6 ...
+Removing libxdmcp6 ...
+Purging configuration files for libxdmcp6 ...
+Removing libxml2 ...
+Purging configuration files for libxml2 ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing ttf-dejavu-core ...
+Removing ucf ...
+Purging configuration files for ucf ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+Removing xdg-utils ...
+Removing zip ...
+Removing zlib1g-dev ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: i386
-Build-Space: 5076
-Build-Time: 18
+Build-Space: 5300
+Build-Time: 19
Distribution: sid
-Install-Time: 123
-Job: r-bioc-limma_3.8.3-1
+Install-Time: 191
+Job: r-bioc-limma_3.10.0-1
Package: r-bioc-limma
-Package-Time: 170
-Source-Version: 3.8.3-1
-Space: 5076
+Package-Time: 228
+Source-Version: 3.10.0-1
+Space: 5300
Status: successful
-Version: 3.8.3-1
+Version: 3.10.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110814-1238
-Build needed 00:02:50, 5076k disc space
-Signature with key 'E4786BDC' requested:
+Finished at 20111104-0542
+Build needed 00:03:48, 5300k disc space
+Signature with key 'B074D6C9' requested:
diff --git a/ia64.log b/ia64.log
index 1affb1d..02a5e14 100644
--- a/ia64.log
+++ b/ia64.log
@@ -1,67 +1,132 @@
-From buildd at alkman.debian.org Wed Aug 17 05:16:21 2011
-Return-path: <buildd at alkman.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at caballero.debian.org Fri Nov 04 05:40:59 2011
+Return-path: <buildd at caballero.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at alkman.debian.org>)
- id 1QtYUH-0006Mk-4a
- for logs at buildd.debian.org; Wed, 17 Aug 2011 05:16:21 +0000
-Received: from alkman.debian.org ([192.25.206.63])
+ (Exim 4.72) (envelope-from <buildd at caballero.debian.org>)
+ id 1RMCWQ-0006kE-Ci
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 05:40:59 +0000
+Received: from caballero.debian.org ([193.201.200.200])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=alkman.debian.org, EMAIL=hostmaster at alkman.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at alkman.debian.org>)
- id 1QtYUF-0002zA-4z
- for logs at buildd.debian.org; Wed, 17 Aug 2011 05:16:19 +0000
-Received: from buildd by alkman.debian.org with local (Exim 4.72)
- (envelope-from <buildd at alkman.debian.org>)
- id 1QtYUC-0007iE-SW; Wed, 17 Aug 2011 05:16:16 +0000
-Date: Wed, 17 Aug 2011 05:16:16 +0000
-Message-Id: <E1QtYUC-0007iE-SW at alkman.debian.org>
-From: buildd on alkman <buildd at alkman.debian.org>
-To: buildd-porters at alkman.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on ia64 (dist=sid)
+ CN=caballero.debian.org,
+ EMAIL=hostmaster at caballero.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at caballero.debian.org>)
+ id 1RMCWO-0001Ha-90; Fri, 04 Nov 2011 05:40:56 +0000
+Received: from buildd by caballero.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at caballero.debian.org>) id 1RMCWN-0007eX-He
+ for buildd-porters at caballero.debian.org; Fri, 04 Nov 2011 05:40:55 +0000
+Date: Fri, 04 Nov 2011 05:40:55 +0000
+Message-Id: <E1RMCWN-0007eX-He at caballero.debian.org>
+From: buildd on caballero <buildd at caballero.debian.org>
+To: buildd-porters at caballero.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on ia64 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
+Delivered-To: buildd-porters at caballero.debian.org
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on alkman.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on caballero.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (ia64) 17 Aug 2011 05:10 ║
+║ r-bioc-limma 3.10.0-1 (ia64) 04 Nov 2011 05:38 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
+Source Version: 3.10.0-1
Architecture: ia64
-Get:1 http://spohr.debian.org unstable InRelease [146 kB]
-Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://spohr.debian.org unstable/main Sources [5453 kB]
-Get:4 http://spohr.debian.org unstable/contrib Sources [52.5 kB]
-Get:5 http://spohr.debian.org unstable/non-free Sources [95.9 kB]
-Get:6 http://spohr.debian.org unstable/main ia64 Packages [7346 kB]
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Get:1 http://mirror.positive-internet.com sid InRelease [146 kB]
+Get:2 http://mirror.positive-internet.com sid/main Sources/DiffIndex [2038 B]
+Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
+Hit http://mirror.positive-internet.com sid/contrib Sources/DiffIndex
+Get:3 http://mirror.positive-internet.com sid/main ia64 Packages/DiffIndex [2038 B]
+Get:4 http://mirror.positive-internet.com sid/contrib ia64 Packages/DiffIndex [2023 B]
+Ign http://mirror.positive-internet.com sid/contrib TranslationIndex
+Get:5 http://mirror.positive-internet.com sid/main TranslationIndex [2045 B]
+Get:6 http://mirror.positive-internet.com sid/main 2011-11-04-0214.23.pdiff [9840 B]
Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://incoming.debian.org unstable/main Sources [5453 kB]
-Get:9 http://spohr.debian.org unstable/contrib ia64 Packages [55.1 kB]
-Ign http://spohr.debian.org unstable/contrib TranslationIndex
-Get:10 http://spohr.debian.org unstable/main TranslationIndex [2185 B]
-Ign http://spohr.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [95.9 kB]
-Get:13 http://incoming.debian.org unstable/main ia64 Packages [7346 kB]
-Get:14 http://incoming.debian.org unstable/contrib ia64 Packages [55.1 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
-Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [33.2 kB]
-Get:18 http://incoming.debian.org Packages [423 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Get:8 http://mirror.positive-internet.com sid/main 2011-11-04-0214.23.pdiff [9840 B]
+Get:9 http://mirror.positive-internet.com sid/main ia64 2011-11-04-0214.23.pdiff [24.2 kB]
+Get:10 http://mirror.positive-internet.com sid/contrib ia64 2011-11-04-0214.23.pdiff [271 B]
+Ign http://mirror.positive-internet.com sid/contrib Translation-en
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main ia64 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib ia64 Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Get:11 http://incoming.debian.org Release [1604 B]
+Get:12 http://mirror.positive-internet.com sid/main ia64 2011-11-04-0214.23.pdiff [24.2 kB]
+Get:13 http://incoming.debian.org Sources [31.6 kB]
+Get:14 http://incoming.debian.org Packages [571 kB]
+Ign http://incoming.debian.org sid/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.8 MB in 24s (1098 kB/s)
+Get:15 http://mirror.positive-internet.com sid/contrib ia64 2011-11-04-0214.23.pdiff [271 B]
+Fetched 794 kB in 8s (92.3 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -73,20 +138,80 @@ Check APT
─────────
Checking available source versions...
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Download source files with APT
──────────────────────────────
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://spohr.debian.org/debian/ unstable/main r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://spohr.debian.org/debian/ unstable/main r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://spohr.debian.org/debian/ unstable/main r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 0s (8574 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 1s (639 kB/s)
Download complete and in download only mode
Check arch
@@ -99,20 +224,170 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Installing positive dependencies:
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Removing negative dependencies:
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Checking correctness of dependencies...
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-limma build dependencies (internal resolver) │
@@ -120,67 +395,154 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.4)
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-1)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-4)
-mount: already installed (2.19.1-4)
-util-linux: already installed (2.19.1-4)
-libc6.1-dev: already installed (2.13-10)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6.1-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
+Using default version 2.14.0-1
Checking for dependency conflicts...
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Installing positive dependencies: debhelper cdbs r-base-dev
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 libreadline-dev
- libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
- libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg
- libgomp1-dbg libquadmath0-dbg libmudflap0-dbg gettext-doc gfortran-doc
- gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -189,326 +551,214 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0
- libstdc++6 libstdc++6-4.6-dev
-9 upgraded, 76 newly installed, 0 to remove and 25 not upgraded.
-Need to get 88.6 MB of archives.
-After this operation, 192 MB of additional disk space will be used.
-Get:1 http://spohr.debian.org/debian/ unstable/main libgomp1 ia64 4.6.1-7 [36.3 kB]
-Get:2 http://spohr.debian.org/debian/ unstable/main gcc-4.6-base ia64 4.6.1-7 [134 kB]
-Get:3 http://spohr.debian.org/debian/ unstable/main libgcc1 ia64 1:4.6.1-7 [44.9 kB]
-Get:4 http://spohr.debian.org/debian/ unstable/main cpp-4.6 ia64 4.6.1-7 [6011 kB]
-Get:5 http://spohr.debian.org/debian/ unstable/main libquadmath0 ia64 4.6.1-7 [166 kB]
-Get:6 http://spohr.debian.org/debian/ unstable/main libstdc++6-4.6-dev ia64 4.6.1-7 [1864 kB]
-Get:7 http://spohr.debian.org/debian/ unstable/main g++-4.6 ia64 4.6.1-7 [7237 kB]
-Get:8 http://spohr.debian.org/debian/ unstable/main gcc-4.6 ia64 4.6.1-7 [6364 kB]
-Get:9 http://spohr.debian.org/debian/ unstable/main libstdc++6 ia64 4.6.1-7 [436 kB]
-Get:10 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.2.0-3 [47.8 kB]
-Get:11 http://spohr.debian.org/debian/ unstable/main libpcre3 ia64 8.12-4 [272 kB]
-Get:12 http://spohr.debian.org/debian/ unstable/main libdatrie1 ia64 0.2.4-3 [31.5 kB]
-Get:13 http://spohr.debian.org/debian/ unstable/main libexpat1 ia64 2.0.1-7 [213 kB]
-Get:14 http://spohr.debian.org/debian/ unstable/main libfreetype6 ia64 2.4.6-1 [614 kB]
-Get:15 http://spohr.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:16 http://spohr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:17 http://spohr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:18 http://spohr.debian.org/debian/ unstable/main libfontconfig1 ia64 2.8.0-3 [320 kB]
-Get:19 http://spohr.debian.org/debian/ unstable/main libgfortran3 ia64 4.6.1-7 [462 kB]
-Get:20 http://spohr.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:21 http://spohr.debian.org/debian/ unstable/main libice6 ia64 2:1.0.7-2 [75.8 kB]
-Get:22 http://spohr.debian.org/debian/ unstable/main libpixman-1-0 ia64 0.22.2-1 [413 kB]
-Get:23 http://spohr.debian.org/debian/ unstable/main libpng12-0 ia64 1.2.46-3 [222 kB]
-Get:24 http://spohr.debian.org/debian/ unstable/main libxau6 ia64 1:1.0.6-3 [18.4 kB]
-Get:25 http://spohr.debian.org/debian/ unstable/main libxdmcp6 ia64 1:1.1.0-3 [25.8 kB]
-Get:26 http://spohr.debian.org/debian/ unstable/main libxcb1 ia64 1.7-3 [52.1 kB]
-Get:27 http://spohr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:28 http://spohr.debian.org/debian/ unstable/main libx11-6 ia64 2:1.4.4-1 [1080 kB]
-Get:29 http://spohr.debian.org/debian/ unstable/main libxcb-render0 ia64 1.7-3 [18.1 kB]
-Get:30 http://spohr.debian.org/debian/ unstable/main libxcb-shm0 ia64 1.7-3 [10.4 kB]
-Get:31 http://spohr.debian.org/debian/ unstable/main libxrender1 ia64 1:0.9.6-2 [41.8 kB]
-Get:32 http://spohr.debian.org/debian/ unstable/main libcairo2 ia64 1.10.2-6.1 [1165 kB]
-Get:33 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.28.6-1 [1973 kB]
-Get:34 http://spohr.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:35 http://spohr.debian.org/debian/ unstable/main libthai0 ia64 0.1.15-2 [47.4 kB]
-Get:36 http://spohr.debian.org/debian/ unstable/main libxft2 ia64 2.2.0-3 [77.5 kB]
-Get:37 http://spohr.debian.org/debian/ unstable/main fontconfig ia64 2.8.0-3 [340 kB]
-Get:38 http://spohr.debian.org/debian/ unstable/main libpango1.0-0 ia64 1.28.4-2 [559 kB]
-Get:39 http://spohr.debian.org/debian/ unstable/main libpcrecpp0 ia64 8.12-4 [116 kB]
-Get:40 http://spohr.debian.org/debian/ unstable/main libsm6 ia64 2:1.2.0-2 [36.0 kB]
-Get:41 http://spohr.debian.org/debian/ unstable/main libxext6 ia64 2:1.3.0-3 [68.0 kB]
-Get:42 http://spohr.debian.org/debian/ unstable/main libxss1 ia64 1:1.2.1-2 [19.0 kB]
-Get:43 http://spohr.debian.org/debian/ unstable/main libxt6 ia64 1:1.1.1-2 [286 kB]
-Get:44 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 8.2.3 [238 kB]
-Get:45 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.21-6 [1402 kB]
-Get:46 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.0.2-2 [1118 kB]
-Get:47 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 5.04-5+b1 [263 kB]
-Get:48 http://spohr.debian.org/debian/ unstable/main file ia64 5.04-5+b1 [52.0 kB]
-Get:49 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-4 [173 kB]
-Get:50 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.7.8.dfsg-4 [1177 kB]
-Get:51 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
-Get:52 http://spohr.debian.org/debian/ unstable/main libcroco3 ia64 0.6.2-1 [155 kB]
-Get:53 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-4 [467 kB]
-Get:54 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-4 [2441 kB]
-Get:55 http://spohr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:56 http://spohr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:57 http://spohr.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
-Get:58 http://spohr.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:59 http://spohr.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:60 http://spohr.debian.org/debian/ unstable/main gfortran-4.6 ia64 4.6.1-7 [7147 kB]
-Get:61 http://spohr.debian.org/debian/ unstable/main gfortran ia64 4:4.6.1-2 [1120 B]
-Get:62 http://spohr.debian.org/debian/ unstable/main libblas3gf ia64 1.2.20110419-2 [313 kB]
-Get:63 http://spohr.debian.org/debian/ unstable/main libblas-dev ia64 1.2.20110419-2 [344 kB]
-Get:64 http://spohr.debian.org/debian/ unstable/main libbz2-dev ia64 1.0.5-6 [51.8 kB]
-Get:65 http://spohr.debian.org/debian/ unstable/main libjpeg62 ia64 6b1-2 [154 kB]
-Get:66 http://spohr.debian.org/debian/ unstable/main libjpeg8 ia64 8c-2 [240 kB]
-Get:67 http://spohr.debian.org/debian/ unstable/main libjpeg8-dev ia64 8c-2 [351 kB]
-Get:68 http://spohr.debian.org/debian/ unstable/main liblapack3gf ia64 3.3.1-1 [7288 kB]
-Get:69 http://spohr.debian.org/debian/ unstable/main liblapack-dev ia64 3.3.1-1 [8033 kB]
-Get:70 http://spohr.debian.org/debian/ unstable/main libncurses5-dev ia64 5.9-1 [614 kB]
-Get:71 http://spohr.debian.org/debian/ unstable/main libpaper1 ia64 1.1.24+nmu1 [22.9 kB]
-Get:72 http://spohr.debian.org/debian/ unstable/main libpaper-utils ia64 1.1.24+nmu1 [19.7 kB]
-Get:73 http://spohr.debian.org/debian/ unstable/main libpcre3-dev ia64 8.12-4 [362 kB]
-Get:74 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.3.4.dfsg-3 [224 kB]
-Get:75 http://spohr.debian.org/debian/ unstable/main libpng12-dev ia64 1.2.46-3 [306 kB]
-Get:76 http://spohr.debian.org/debian/ unstable/main libreadline6-dev ia64 6.2-2 [339 kB]
-Get:77 http://spohr.debian.org/debian/ unstable/main libreadline-dev ia64 6.2-2 [880 B]
-Get:78 http://spohr.debian.org/debian/ unstable/main libtiff4 ia64 3.9.5-1 [270 kB]
-Get:79 http://spohr.debian.org/debian/ unstable/main zip ia64 3.0-4 [445 kB]
-Get:80 http://spohr.debian.org/debian/ unstable/main unzip ia64 6.0-5 [263 kB]
-Get:81 http://spohr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:82 http://spohr.debian.org/debian/ unstable/main tcl8.5 ia64 8.5.10-1 [1902 kB]
-Get:83 http://spohr.debian.org/debian/ unstable/main tk8.5 ia64 8.5.10-1 [1520 kB]
-Get:84 http://spohr.debian.org/debian/ unstable/main r-base-core ia64 2.13.1-1 [16.3 MB]
-Get:85 http://spohr.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 88.6 MB in 7s (12.2 MB/s)
-(Reading database ... 10586 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-4 (using .../libgomp1_4.6.1-7_ia64.deb) ...
-Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-4 (using .../gcc-4.6-base_4.6.1-7_ia64.deb) ...
-Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.1-7) ...
-(Reading database ... 10586 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-4 (using .../libgcc1_1%3a4.6.1-7_ia64.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.1-7) ...
-(Reading database ... 10586 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-4 (using .../cpp-4.6_4.6.1-7_ia64.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace libquadmath0 4.6.1-4 (using .../libquadmath0_4.6.1-7_ia64.deb) ...
-Unpacking replacement libquadmath0 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-4 (using .../libstdc++6-4.6-dev_4.6.1-7_ia64.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-4 (using .../g++-4.6_4.6.1-7_ia64.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-4 (using .../gcc-4.6_4.6.1-7_ia64.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-4 (using .../libstdc++6_4.6.1-7_ia64.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.1-7) ...
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10586 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_ia64.deb) ...
-Selecting previously deselected package libpcre3.
+0 upgraded, 76 newly installed, 0 to remove and 4 not upgraded.
+Need to get 0 B/70.2 MB of archives.
+After this operation, 186 MB of additional disk space will be used.
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10534 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_ia64.deb) ...
+Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_ia64.deb) ...
-Selecting previously deselected package libdatrie1.
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_ia64.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_ia64.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_ia64.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_ia64.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_ia64.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_ia64.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_ia64.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_ia64.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_ia64.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-7_ia64.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_ia64.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_ia64.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_ia64.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_ia64.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_ia64.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_ia64.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_ia64.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_ia64.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_ia64.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_ia64.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_ia64.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_ia64.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_ia64.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_ia64.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_ia64.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_ia64.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_ia64.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_ia64.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_ia64.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_ia64.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_ia64.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_ia64.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_ia64.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_ia64.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_ia64.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_ia64.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_ia64.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_ia64.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_ia64.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_ia64.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_ia64.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_ia64.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_ia64.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_ia64.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_ia64.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_ia64.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_ia64.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_ia64.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_ia64.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_ia64.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_ia64.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_ia64.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-7_ia64.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_ia64.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_ia64.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_ia64.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_ia64.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_ia64.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_ia64.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_ia64.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_ia64.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_ia64.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_ia64.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_ia64.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_ia64.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_ia64.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_ia64.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_ia64.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_ia64.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_ia64.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_ia64.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_ia64.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_ia64.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_ia64.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_ia64.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_ia64.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_ia64.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_ia64.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_ia64.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_ia64.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_ia64.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_ia64.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_ia64.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libgomp1 (4.6.1-7) ...
-Setting up cpp-4.6 (4.6.1-7) ...
-Setting up libquadmath0 (4.6.1-7) ...
-Setting up gcc-4.6 (4.6.1-7) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_ia64.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-4) ...
Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-7) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
@@ -518,35 +768,31 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-7) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -554,9 +800,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -564,22 +809,80 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up libstdc++6-4.6-dev (4.6.1-7) ...
-Setting up g++-4.6 (4.6.1-7) ...
+Setting up r-base-dev (2.14.0-1) ...
Removing negative dependencies:
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 25 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-mckinley ia64 (ia64)
-Toolchain package versions: binutils_2.21.53.20110720-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-7 gcc-4.6_4.6.1-7 libc6.1-dev_2.13-10 libstdc++6_4.6.1-7 libstdc++6-4.6-dev_4.6.1-7 linux-libc-dev_2.6.39-3
-Package versions: apt_0.8.15.2 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110720-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-7 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-7 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-6 gcc-4.5-base_4.5.3-3 gcc-4.6_4.6.1-7 gcc-4.6-base_4.6.1-7 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc6.1_2.13-10 libc6.1-dev_2.13-10 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-7 libgdbm3_1.8.3-10 libgfortran3_4.6.1-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-7 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-4 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-7 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-7 libstdc++6-4.6-dev_4.6.1-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-4 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Kernel: Linux 2.6.32-bpo.5-mckinley ia64 (ia64)
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6.1-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-6
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6.1_2.13-21 libc6.1-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.2-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-6 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -589,13 +892,43 @@ Package versions: apt_0.8.15.2 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binu
Unpack source
─────────────
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -604,14 +937,39 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture ia64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -619,9 +977,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -642,20 +1000,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -666,43 +1024,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/src'
-installing to /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -734,58 +1094,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_ia64.deb'.
- dpkg-genchanges -B -mia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org> >../r-bioc-limma_3.8.3-1_ia64.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org> >../r-bioc-limma_3.10.0-1_ia64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110817-0516
+Build finished at 20111104-0540
-r-bioc-limma_3.8.3-1_ia64.changes:
+r-bioc-limma_3.10.0-1_ia64.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: ia64
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
-Maintainer: ia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org>
+Maintainer: ia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- 599a59cb0f73ca578c113b493553cd4aa7a5c741 1404814 r-bioc-limma_3.8.3-1_ia64.deb
+ efe078c213aff21aaf003123a3cf04ccae3de5e5 1474804 r-bioc-limma_3.10.0-1_ia64.deb
Checksums-Sha256:
- edb32f83855cdfba9495c775e6d04f416e82ea80ba3009291bd2c5c198deabc8 1404814 r-bioc-limma_3.8.3-1_ia64.deb
+ 9b6454d579504eedc7e7b2252d0f9d897fe7cdf406442d46cc662ea3f412db82 1474804 r-bioc-limma_3.10.0-1_ia64.deb
Files:
- 18f0990abfe20ad9e3ef7b1a27a04e9c 1404814 gnu-r optional r-bioc-limma_3.8.3-1_ia64.deb
+ e2776ca0c6578d32d1b08d68f40b1ee3 1474804 gnu-r optional r-bioc-limma_3.10.0-1_ia64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_ia64.deb
-─────────────────────────────
+r-bioc-limma_3.10.0-1_ia64.deb
+──────────────────────────────
new debian package, version 2.0.
- size 1404814 bytes: control archive= 1513 bytes.
- 768 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1474804 bytes: control archive= 1540 bytes.
+ 769 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: ia64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1952
- Depends: libc6.1 (>= 2.2), r-base-core (>= 2.13.1~)
+ Installed-Size: 1687
+ Depends: libc6.1 (>= 2.2), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -797,50 +1157,51 @@ r-bioc-limma_3.8.3-1_ia64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-17 05:16 ./
-drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/
-drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 234 2011-08-17 05:15 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2117 2011-08-17 05:15 ./usr/share/doc/r-bioc-limma/copyright
-drwxr-xr-x root/root 0 2011-08-17 05:15 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-17 05:15 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9360 2011-08-17 05:16 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-08-17 05:15 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-08-17 05:15 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34039 2011-08-17 05:15 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 2363 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6150 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3248 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 450222 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 1338 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/paths.rds
--rwxr-xr-x root/root 1230 2011-08-17 05:15 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 687780 2011-08-17 05:15 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 45616 2011-08-17 05:15 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 1711 2011-08-17 05:15 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2011-08-17 05:15 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 84899 2011-08-17 05:15 ./usr/lib/R/site-library/limma/doc/changelog.txt
-drwxr-xr-x root/root 0 2011-08-17 05:15 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 3746 2011-08-17 05:15 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 173273 2011-08-17 05:15 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 384 2011-08-17 05:15 ./usr/lib/R/site-library/limma/R/limma
-drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 23480 2011-08-17 05:16 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 505 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 217 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 2854 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5524 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 5947 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 1054 2011-08-17 05:15 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 1008 2011-08-17 05:15 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 1872 2011-08-17 05:15 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 05:39 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 05:39 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1901 2011-11-04 05:39 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 969 2011-11-04 05:39 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1055 2011-11-04 05:39 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6023 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5603 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 216 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2011-11-04 05:40 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 23480 2011-11-04 05:40 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-11-04 05:40 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197382 2011-11-04 05:40 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3783 2011-11-04 05:40 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 87742 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 737661 2011-11-04 05:40 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-11-04 05:40 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 1984 2011-11-04 05:40 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1350 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 455665 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3270 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6221 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2011-11-04 05:40 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2011-11-04 05:40 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-04 05:40 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9458 2011-11-04 05:40 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 05:40 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2118 2011-11-04 05:39 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 329 2011-11-04 05:39 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -854,27 +1215,296 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ia64-sbuild-2fe84207-8217-430f-ad74-3b34d44f0fbe/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY
-Not cleaning session: cloned chroot in use
+Purging /var/lib/schroot/mount/sid-ia64-sbuild-760fea7e-9b1c-417b-b345-3599e8894c67/build/buildd-r-bioc-limma_3.10.0-1-ia64-T2WhDO
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages will be REMOVED:
+ bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
+ gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
+ intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
+ libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
+ libglib2.0-0* libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
+ libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
+ libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
+ libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
+ libthai-data* libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6*
+ libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
+ libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db*
+ po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf*
+ unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 76 to remove and 4 not upgraded.
+After this operation, 186 MB disk space will be freed.
+(Reading database ... 14544 files and directories currently installed.)
+Removing debhelper ...
+Removing man-db ...
+Purging configuration files for man-db ...
+Removing bsdmainutils ...
+Purging configuration files for bsdmainutils ...
+Removing r-base-dev ...
+Removing cdbs ...
+Removing dpatch ...
+Purging configuration files for dpatch ...
+Removing file ...
+Removing r-base-core ...
+Purging configuration files for r-base-core ...
+Removing libpango1.0-0 ...
+Purging configuration files for libpango1.0-0 ...
+Removing fontconfig ...
+Purging configuration files for fontconfig ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing libxft2 ...
+Purging configuration files for libxft2 ...
+Removing libcairo2 ...
+Purging configuration files for libcairo2 ...
+Removing libfontconfig1 ...
+Purging configuration files for libfontconfig1 ...
+Removing fontconfig-config ...
+Purging configuration files for fontconfig-config ...
+Removing po-debconf ...
+Removing intltool-debian ...
+Removing gettext ...
+Removing gettext-base ...
+Removing gfortran ...
+Removing gfortran-4.6 ...
+Removing groff-base ...
+Purging configuration files for groff-base ...
+Removing html2text ...
+Purging configuration files for html2text ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
+Removing liblapack3gf ...
+Purging configuration files for liblapack3gf ...
+Removing libblas3gf ...
+Purging configuration files for libblas3gf ...
+Removing libbz2-dev ...
+Removing libcroco3 ...
+Purging configuration files for libcroco3 ...
+Removing libthai0 ...
+Purging configuration files for libthai0 ...
+Removing libdatrie1 ...
+Purging configuration files for libdatrie1 ...
+Removing libexpat1 ...
+Purging configuration files for libexpat1 ...
+Removing libfreetype6 ...
+Purging configuration files for libfreetype6 ...
+Removing libgfortran3 ...
+Purging configuration files for libgfortran3 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing libxt6 ...
+Purging configuration files for libxt6 ...
+Removing libsm6 ...
+Purging configuration files for libsm6 ...
+Removing libice6 ...
+Purging configuration files for libice6 ...
+Removing libtiff4 ...
+Purging configuration files for libtiff4 ...
+Removing libjpeg8-dev ...
+Removing libjpeg8 ...
+Removing libmagic1 ...
+Purging configuration files for libmagic1 ...
+Removing libncurses5-dev ...
+Removing libpaper-utils ...
+Removing libpaper1 ...
+Purging configuration files for libpaper1 ...
+Removing libpcre3-dev ...
+Removing libpcrecpp0 ...
+Purging configuration files for libpcrecpp0 ...
+Removing libpcre3 ...
+Purging configuration files for libpcre3 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
+Removing libpixman-1-0 ...
+Purging configuration files for libpixman-1-0 ...
+Removing libpng12-dev ...
+Removing libpng12-0 ...
+Purging configuration files for libpng12-0 ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
+Removing libthai-data ...
+Removing libtinfo-dev ...
+Removing libunistring0 ...
+Purging configuration files for libunistring0 ...
+Removing libxss1 ...
+Purging configuration files for libxss1 ...
+Removing libxrender1 ...
+Purging configuration files for libxrender1 ...
+Removing libxext6 ...
+Purging configuration files for libxext6 ...
+Removing libx11-6 ...
+Purging configuration files for libx11-6 ...
+Removing libx11-data ...
+Removing libxcb-shm0 ...
+Purging configuration files for libxcb-shm0 ...
+Removing libxcb-render0 ...
+Purging configuration files for libxcb-render0 ...
+Removing libxcb1 ...
+Purging configuration files for libxcb1 ...
+Removing libxau6 ...
+Purging configuration files for libxau6 ...
+Removing libxdmcp6 ...
+Purging configuration files for libxdmcp6 ...
+Removing libxml2 ...
+Purging configuration files for libxml2 ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing ttf-dejavu-core ...
+Removing ucf ...
+Purging configuration files for ucf ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
+Removing xdg-utils ...
+Removing zip ...
+Removing zlib1g-dev ...
+W: line 8 [lenny-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [lenny-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [lenny-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [lenny-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [squeeze-security-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [squeeze-security-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [squeeze-security-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
+W: line 8 [sid-ia64-sbuild]: Deprecated key 'run-setup-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 9 [sid-ia64-sbuild]: Deprecated key 'run-exec-scripts' used
+I: This option will be removed in the future; please update your configuration
+W: line 4 [sid-ia64-sbuild]: Deprecated key 'location' used
+I: This option will be removed in the future; please update your configuration
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: ia64
-Build-Space: 7680
-Build-Time: 44
+Build-Space: 5324
+Build-Time: 38
Distribution: sid
-Install-Time: 222
-Job: r-bioc-limma_3.8.3-1
+Install-Time: 59
+Job: r-bioc-limma_3.10.0-1
Package: r-bioc-limma
-Package-Time: 318
-Source-Version: 3.8.3-1
-Space: 7680
+Package-Time: 115
+Source-Version: 3.10.0-1
+Space: 5324
Status: successful
-Version: 3.8.3-1
+Version: 3.10.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110817-0516
-Build needed 00:05:18, 7680k disc space
-Signature with key 'C6591CE9' requested:
+Finished at 20111104-0540
+Build needed 00:01:55, 5324k disc space
diff --git a/info b/info
index 9886d2f..e01f5a0 100644
--- a/info
+++ b/info
@@ -1,11 +1,13 @@
-kfreebsd-i386~1313324359~sid~successful
-powerpc~1313324394~sid~successful
-kfreebsd-amd64~1313324508~sid~successful
-armel~1313324572~sid~successful
-mips~1313324626~sid~successful
-i386~1313325489~sid~successful
-mipsel~1313326140~sid~successful
-s390~1313326654~sid~successful
-hurd-i386~1313484175~sid~successful
-sparc~1313499196~sid~successful
-ia64~1313558182~sid~successful
+ia64~1320385259~sid~successful
+powerpc~1320385321~sid~successful
+kfreebsd-amd64~1320385342~sid~successful
+i386~1320385349~sid~successful
+mipsel~1320385562~sid~successful
+kfreebsd-i386~1320385600~sid~successful
+armel~1320386736~sid~successful
+hurd-i386~1320387509~sid~successful
+s390~1320388676~sid~successful
+sparc~1320392170~sid~successful
+mips~1320425211~sid~successful
+s390x~1323010892~sid~successful
+armhf~1324969059~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
index b861f51..c759729 100644
--- a/kfreebsd-amd64.log
+++ b/kfreebsd-amd64.log
@@ -1,61 +1,49 @@
-From buildd at fasch.debian.org Sun Aug 14 12:21:45 2011
-Return-path: <buildd at fasch.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at fano.debian.org Fri Nov 04 05:42:22 2011
+Return-path: <buildd at fano.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
- id 1QsZhI-0007HO-TH
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:21:45 +0000
-Received: from fasch.debian.org ([194.177.211.201])
+ (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
+ id 1RMCXl-0006vp-Th
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 05:42:22 +0000
+Received: from fano.debian.org ([206.12.19.110])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=fasch.debian.org, EMAIL=hostmaster at fasch.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
- id 1QsZhH-0005vU-A3; Sun, 14 Aug 2011 12:21:43 +0000
-Received: from buildd by fasch.debian.org with local (Exim 4.72)
- (envelope-from <buildd at fasch.debian.org>)
- id 1QsZhG-000Onf-7e; Sun, 14 Aug 2011 12:21:42 +0000
-Message-Id: <E1QsZhG-000Onf-7e at fasch.debian.org>
+ CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
+ id 1RMCXj-0001LO-SW; Fri, 04 Nov 2011 05:42:20 +0000
+Received: from buildd by fano.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at fano.debian.org>)
+ id 1RMCXh-0006S1-5z; Fri, 04 Nov 2011 05:42:17 +0000
+Message-Id: <E1RMCXh-0006S1-5z at fano.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 14 Aug 2011 12:21:42 +0000
-From: buildd on fasch <buildd at fasch.debian.org>
+Date: Fri, 4 Nov 2011 05:42:17 +0000
+From: buildd on fano <buildd at fano.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on kfreebsd-amd64
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on kfreebsd-amd64
(dist=sid)
-Key-Id: 56BAE008
+Key-Id: D33FE1D8
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fasch.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fano.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (kfreebsd-amd64) 14 Aug 2011 12:15 ║
+║ r-bioc-limma 3.10.0-1 (kfreebsd-amd64) 04 Nov 2011 05:38 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
+Source Version: 3.10.0-1
Architecture: kfreebsd-amd64
-Hit http://ftp.gr.debian.org sid InRelease
-Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
-Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
-Hit http://ftp.gr.debian.org sid/main TranslationIndex
-Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
Get:1 http://incoming.debian.org Release.gpg [836 B]
-Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages
-Ign http://ftp.gr.debian.org sid/contrib Translation-en
-Ign http://ftp.gr.debian.org sid/non-free Translation-en
Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Get:2 http://mirror-ubc.debian.org sid InRelease [146 kB]
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
Hit http://incoming.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
@@ -64,18 +52,32 @@ Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
Ign http://incoming.debian.org sid/non-free TranslationIndex
-Get:2 http://incoming.debian.org Release [1604 B]
-Ign http://incoming.debian.org sid/main 2011-08-14-0213.58.pdiff
-Ign http://incoming.debian.org sid/main kfreebsd-amd64 2011-08-14-0213.58.pdiff
+Get:3 http://mirror-ubc.debian.org sid/main Sources/DiffIndex [2038 B]
+Get:4 http://incoming.debian.org Release [1604 B]
Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages
-Hit http://incoming.debian.org sid/main
-Get:3 http://incoming.debian.org Sources [25.0 kB]
-Get:4 http://incoming.debian.org Packages [110 kB]
-Hit http://incoming.debian.org sid/main kfreebsd-amd64
+Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
+Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
+Get:5 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex [2038 B]
+Get:6 http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex [2023 B]
+Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
+Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
+Get:7 http://mirror-ubc.debian.org sid/main TranslationIndex [2045 B]
+Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
+Get:8 http://mirror-ubc.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
+Get:9 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 2011-11-04-0214.23.pdiff [19.9 kB]
+Get:10 http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 2011-11-04-0214.23.pdiff [272 B]
+Get:11 http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages [87.5 kB]
+Get:12 http://mirror-ubc.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
+Get:13 http://incoming.debian.org Sources [31.6 kB]
+Ign http://mirror-ubc.debian.org sid/contrib Translation-en
+Ign http://mirror-ubc.debian.org sid/non-free Translation-en
+Get:14 http://incoming.debian.org Packages [571 kB]
+Get:15 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 2011-11-04-0214.23.pdiff [19.9 kB]
Ign http://incoming.debian.org sid/contrib Translation-en
Ign http://incoming.debian.org sid/non-free Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 137 kB in 3s (36.0 kB/s)
+Get:16 http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 2011-11-04-0214.23.pdiff [272 B]
+Fetched 877 kB in 7s (111 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -96,11 +98,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 2s (334 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 1s (576 kB/s)
Download complete and in download only mode
Check arch
@@ -114,18 +116,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -137,37 +139,37 @@ Checking for already installed dependencies...
base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1)
freebsd-utils: already installed (8.2+ds2-5)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-4)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
tar: already installed (1.25-3)
bsdutils: already installed (1:2.19.1-5)
util-linux: already installed (2.19.1-5)
libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -175,259 +177,254 @@ Building dependency tree...
Reading state information...
The following extra packages will be installed:
dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
- libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf libbz2-dev
+ libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6 libgfortran3
+ libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf
+ libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg ncurses-doc
ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html tclreadline gvfs-bin
+ ttf-arphic-bkai00mp groff less www-browser libmail-box-perl r-doc-info
+ r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1
- libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data
- libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
- libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev
- tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ gfortran gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev
+ liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
+ ucf unzip x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/52.6 MB of archives.
-After this operation, 126 MB of additional disk space will be used.
-Selecting previously deselected package libpipeline1.
-(Reading database ... 12202 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libdatrie1.
+0 upgraded, 71 newly installed, 0 to remove and 7 not upgraded.
+Need to get 0 B/55.3 MB of archives.
+After this operation, 120 MB of additional disk space will be used.
+Selecting previously unselected package libpipeline1.
+(Reading database ... 12291 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-6_kfreebsd-amd64.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_5.09-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../zip_3.0-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_kfreebsd-amd64.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
-Setting up libpcre3 (8.12-4) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-4) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-4) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -435,9 +432,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -445,20 +441,20 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
-Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-4 gcc-4.6_4.6.1-4 kfreebsd-kernel-headers_0.56 libc0.1-dev_2.13-16 libstdc++6_4.6.1-4 libstdc++6-4.6-dev_4.6.1-4
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-4 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-2 g++-4.6_4.6.1-4 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-8 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-4 gcc-4.6-base_4.6.1-4 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.56 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc0.1_2.13-16 libc0.1-dev_2.13-16 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-4 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-4 libgcrypt11_1.4.6-9 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-4 libgfortran3_4.6.1-4 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.12.7-6 libgomp1_4.6.1-4 libgpg-error0_1.10-0.3 libgssglue1_0.3-2 libice6_2:1.0.7-2 libjail1_8.2+ds1-4 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-4 libkvm0_8.2+ds1-4 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-1.1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libsbuf0_8.2+ds1-4 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-4 libstdc++6-4.6-dev_4.6.1-4 libtasn1-3_2.9-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libtirpc1_0.2.2-5 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 type-handling_0.2.23 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 kfreebsd-kernel-headers_0.57 libc0.1-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-11 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.57 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc0.1_2.13-21 libc0.1-dev_2.13-21 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-4 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-4 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libgssglue1_0.3-3.1 libice6_2:1.0.7-2 libjail1_8.2+ds1-4 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-4 libkvm0_8.2+ds1-4 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libncursesw5_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.2-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libsbuf0_8.2+ds1-4 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.13-1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 type-handling_0.2.23 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -469,12 +465,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -483,24 +479,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture kfreebsd-amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
+
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -521,20 +512,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
+
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -545,43 +536,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/src'
-installing to /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -613,58 +606,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb'.
- dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org> >../r-bioc-limma_3.8.3-1_kfreebsd-amd64.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../r-bioc-limma_3.10.0-1_kfreebsd-amd64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110814-1219
+Build finished at 20111104-0541
-r-bioc-limma_3.8.3-1_kfreebsd-amd64.changes:
+r-bioc-limma_3.10.0-1_kfreebsd-amd64.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: kfreebsd-amd64
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
-Maintainer: kfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org>
+Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- bc38900654a4e3248e6d65dd01c7f0c770d4132c 1401056 r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb
+ 55a4e3a8b1e3333f66145d763c6c5d9aa042272c 1471396 r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb
Checksums-Sha256:
- 2ed4840c27e32c23d0bb20505686217d10613ff9fb6ece180ca01c4ad9eb39a0 1401056 r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb
+ f949b9ae9f7d8b8e1970b56b6baa2cec72d4262fad466e8c4d6b35d15d022513 1471396 r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb
Files:
- 43498892e2c7088a0091c41f88a7f163 1401056 gnu-r optional r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb
+ 53191801931c1b6f0735d4823ce17a59 1471396 gnu-r optional r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb
-───────────────────────────────────────
+r-bioc-limma_3.10.0-1_kfreebsd-amd64.deb
+────────────────────────────────────────
new debian package, version 2.0.
- size 1401056 bytes: control archive= 1512 bytes.
- 778 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1471396 bytes: control archive= 1548 bytes.
+ 779 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: kfreebsd-amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1630
- Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.1~)
+ Installed-Size: 1621
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -676,50 +669,51 @@ r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-08-14 12:19 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 1008 2011-08-14 12:19 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1055 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5947 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5524 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2854 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 505 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10904 2011-08-14 12:19 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 173283 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3739 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 84899 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 45616 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 687780 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-08-14 12:19 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1349 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 452493 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3249 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2363 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9360 2011-08-14 12:19 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2117 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 234 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1901 2011-11-04 05:41 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 969 2011-11-04 05:41 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1055 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6023 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5603 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 216 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10904 2011-11-04 05:41 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197389 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3783 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 87742 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 737661 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-11-04 05:41 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 1984 2011-11-04 05:41 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1337 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 457755 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3277 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6221 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9458 2011-11-04 05:41 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2118 2011-11-04 05:40 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 329 2011-11-04 05:40 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -733,31 +727,30 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ka-sbuild-1313324148-91726/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1320385134-22158/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-amd64-ERfQCl
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
- gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
- intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0*
- libice6* libjpeg62* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
- libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
- libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data*
- libthai0* libtiff4* libunistring0* libx11-6* libx11-data* libxau6*
- libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2*
- libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev*
- tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip*
- zlib1g-dev*
-0 upgraded, 0 newly installed, 73 to remove and 0 not upgraded.
-After this operation, 126 MB disk space will be freed.
-(Reading database ... 16021 files and directories currently installed.)
+ gettext-base* gfortran* gfortran-4.6* html2text* intltool-debian*
+ libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3* libdatrie1*
+ libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0* libice6* libjpeg8*
+ libjpeg8-dev* liblapack-dev* liblapack3gf* libmagic1* libncurses5-dev*
+ libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0*
+ libpipeline1* libpixman-1-0* libpng12-dev* libreadline-dev*
+ libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev*
+ libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
+ libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
+ libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
+ ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 71 to remove and 7 not upgraded.
+After this operation, 120 MB disk space will be freed.
+(Reading database ... 15979 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -786,10 +779,6 @@ Removing gettext ...
Removing gettext-base ...
Removing gfortran ...
Removing gfortran-4.6 ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
Removing html2text ...
Purging configuration files for html2text ...
Removing liblapack-dev ...
@@ -819,13 +808,10 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62 ...
Removing libjpeg8-dev ...
Removing libjpeg8 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
Removing libncurses5-dev ...
Removing libpaper-utils ...
Removing libpaper1 ...
@@ -833,14 +819,17 @@ Purging configuration files for libpaper1 ...
Removing libpcre3-dev ...
Removing libpcrecpp0 ...
Purging configuration files for libpcrecpp0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
+Removing man-db ...
+Purging configuration files for man-db ...
Removing libpipeline1 ...
Purging configuration files for libpipeline1 ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
Removing libpng12-dev ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
Removing libthai-data ...
+Removing libtinfo-dev ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libxss1 ...
@@ -885,18 +874,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: kfreebsd-amd64
-Build-Space: 4772
-Build-Time: 25
+Build-Space: 5032
+Build-Time: 40
Distribution: sid
-Install-Time: 196
-Job: r-bioc-limma_3.8.3-1
+Install-Time: 100
+Job: r-bioc-limma_3.10.0-1
Package: r-bioc-limma
-Package-Time: 242
-Source-Version: 3.8.3-1
-Space: 4772
+Package-Time: 158
+Source-Version: 3.10.0-1
+Space: 5032
Status: successful
-Version: 3.8.3-1
+Version: 3.10.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110814-1219
-Build needed 00:04:02, 4772k disc space
-Signature with key '56BAE008' requested:
+Finished at 20111104-0541
+Build needed 00:02:38, 5032k disc space
+Signature with key 'D33FE1D8' requested:
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
index 0b4c8ed..518fc5a 100644
--- a/kfreebsd-i386.log
+++ b/kfreebsd-i386.log
@@ -1,59 +1,47 @@
-From buildd at field.debian.org Sun Aug 14 12:19:18 2011
-Return-path: <buildd at field.debian.org>
+From buildd at finzi.debian.org Fri Nov 04 05:46:39 2011
+Return-path: <buildd at finzi.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at field.debian.org>)
- id 1QsZew-0006iw-Gj
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:19:18 +0000
-Received: from field.debian.org ([194.177.211.210])
+ (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
+ id 1RMCbv-0007Tb-QX
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 05:46:39 +0000
+Received: from finzi.debian.org ([206.12.19.111])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=field.debian.org, EMAIL=hostmaster at field.debian.org (verified)
+ CN=finzi.debian.org, EMAIL=hostmaster at finzi.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at field.debian.org>)
- id 1QsZeu-0005jK-Sr; Sun, 14 Aug 2011 12:19:17 +0000
-Received: from buildd by field.debian.org with local (Exim 4.72)
- (envelope-from <buildd at field.debian.org>)
- id 1QsZet-000IVl-OU; Sun, 14 Aug 2011 12:19:15 +0000
-Message-Id: <E1QsZet-000IVl-OU at field.debian.org>
+ (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
+ id 1RMCbt-0007Z8-Cr; Fri, 04 Nov 2011 05:46:38 +0000
+Received: from buildd by finzi.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at finzi.debian.org>)
+ id 1RMCbp-000Hnl-R1; Fri, 04 Nov 2011 05:46:33 +0000
+Message-Id: <E1RMCbp-000Hnl-R1 at finzi.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 14 Aug 2011 12:19:15 +0000
-From: buildd on field <buildd at field.debian.org>
+Date: Fri, 4 Nov 2011 05:46:33 +0000
+From: buildd on finzi <buildd at finzi.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on kfreebsd-i386
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on kfreebsd-i386
(dist=sid)
-Key-Id: 6B8016EE
+Key-Id: D859A500
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on field.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on finzi.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (kfreebsd-i386) 14 Aug 2011 12:13 ║
+║ r-bioc-limma 3.10.0-1 (kfreebsd-i386) 04 Nov 2011 05:43 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
+Source Version: 3.10.0-1
Architecture: kfreebsd-i386
-Hit http://ftp.gr.debian.org sid InRelease
-Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
-Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
-Hit http://ftp.gr.debian.org sid/main TranslationIndex
-Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
-Hit http://incoming.debian.org Release.gpg
-Ign http://ftp.gr.debian.org sid/contrib Translation-en
-Ign http://ftp.gr.debian.org sid/non-free Translation-en
+Get:1 http://incoming.debian.org Release.gpg [836 B]
Hit http://incoming.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
@@ -63,16 +51,31 @@ Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
Ign http://incoming.debian.org sid/non-free TranslationIndex
-Hit http://incoming.debian.org Release
-Ign http://incoming.debian.org sid/main 2011-08-14-0213.58.pdiff
-Ign http://incoming.debian.org sid/main kfreebsd-i386 2011-08-14-0213.58.pdiff
-Hit http://incoming.debian.org sid/main
-Hit http://incoming.debian.org sid/main kfreebsd-i386
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
+Get:2 http://mirror-ubc.debian.org sid InRelease [146 kB]
+Get:3 http://incoming.debian.org Release [1604 B]
+Get:4 http://mirror-ubc.debian.org sid/main Sources/DiffIndex [2038 B]
+Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
+Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
+Get:5 http://mirror-ubc.debian.org sid/main kfreebsd-i386 Packages/DiffIndex [2038 B]
+Get:6 http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex [2023 B]
+Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
+Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
+Hit http://mirror-ubc.debian.org sid/main TranslationIndex
+Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
+Get:7 http://incoming.debian.org Sources [31.6 kB]
+Get:8 http://incoming.debian.org Packages [571 kB]
+Get:9 http://mirror-ubc.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
+Get:10 http://mirror-ubc.debian.org sid/main kfreebsd-i386 2011-11-04-0214.23.pdiff [21.0 kB]
+Get:11 http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 2011-11-04-0214.23.pdiff [272 B]
+Get:12 http://mirror-ubc.debian.org sid/main 2011-11-04-0214.23.pdiff [9840 B]
+Ign http://mirror-ubc.debian.org sid/contrib Translation-en
+Ign http://mirror-ubc.debian.org sid/non-free Translation-en
Ign http://incoming.debian.org sid/contrib Translation-en
Ign http://incoming.debian.org sid/non-free Translation-en
+Get:13 http://mirror-ubc.debian.org sid/main kfreebsd-i386 2011-11-04-0214.23.pdiff [21.0 kB]
Ign http://incoming.debian.org Translation-en
+Get:14 http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 2011-11-04-0214.23.pdiff [272 B]
+Fetched 789 kB in 7s (101 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -93,11 +96,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 2s (367 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 1s (635 kB/s)
Download complete and in download only mode
Check arch
@@ -111,18 +114,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -134,37 +137,37 @@ Checking for already installed dependencies...
base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1)
freebsd-utils: already installed (8.2+ds2-5)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-4)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
tar: already installed (1.25-3)
bsdutils: already installed (1:2.19.1-5)
util-linux: already installed (2.19.1-5)
libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -172,259 +175,254 @@ Building dependency tree...
Reading state information...
The following extra packages will be installed:
dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
- libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf libbz2-dev
+ libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6 libgfortran3
+ libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf
+ libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
devscripts dh-make curl defoma gettext-doc gfortran-doc gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ libgfortran3-dbg ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp groff less
+ www-browser libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html
+ tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
- x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ patchutils autopoint libglib2.0-data shared-mime-info x-ttcidfont-conf
+ xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1
- libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data
- libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
- libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev
- tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ gfortran gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev
+ liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
+ ucf unzip x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/48.9 MB of archives.
-After this operation, 116 MB of additional disk space will be used.
-Selecting previously deselected package libpipeline1.
-(Reading database ... 12260 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package libdatrie1.
+0 upgraded, 71 newly installed, 0 to remove and 7 not upgraded.
+Need to get 0 B/51.8 MB of archives.
+After this operation, 111 MB of additional disk space will be used.
+Selecting previously unselected package libpipeline1.
+(Reading database ... 14032 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_kfreebsd-i386.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_kfreebsd-i386.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-6_kfreebsd-i386.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_kfreebsd-i386.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_kfreebsd-i386.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_5.09-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_kfreebsd-i386.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_kfreebsd-i386.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_kfreebsd-i386.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_kfreebsd-i386.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_kfreebsd-i386.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_kfreebsd-i386.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_kfreebsd-i386.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../zip_3.0-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_kfreebsd-i386.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
-Setting up libpcre3 (8.12-4) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-6) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-6) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -432,9 +430,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -442,20 +439,20 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
-Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 kfreebsd-kernel-headers_0.56 libc0.1-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-8 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.56 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc0.1_2.13-16 libc0.1-dev_2.13-16 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-4 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgcrypt11_1.4.6-9 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-4 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.12.7-6 libgomp1_4.6.1-6 libgpg-error0_1.10-0.3 libgssglue1_0.3-2 libice6_2:1.0.7-2 libjail1_8.2+ds1-4 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-4 libkvm0_8.2+ds1-4 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-1.1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-6 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libsbuf0_8.2+ds1-4 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libtasn1-3_2.9-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libtirpc1_0.2.2-5 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.46 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.13-1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 type-handling_0.2.23 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 kfreebsd-kernel-headers_0.57 libc0.1-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3
+Package versions: apt_0.8.15.9 autotools-dev_20110511.1 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.57 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc0.1_2.13-21 libc0.1-dev_2.13-21 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-4 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-4 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgnutls26_2.12.12-1 libgomp1_4.6.2-3 libgpg-error0_1.10-1 libgssglue1_0.3-3.1 libice6_2:1.0.7-2 libjail1_8.2+ds1-4 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-4 libkvm0_8.2+ds1-4 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-4 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libncursesw5_5.9-2 libp11-kit0_0.7-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.2-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libsasl2-2_2.1.25.dfsg1-2 libsbuf0_8.2+ds1-4 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libtasn1-3_2.10-1 libtext-charwidth-perl_0.04-7 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 netbase_4.47 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.13-1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 vim_2:7.3.346-1 vim-common_2:7.3.346-1 vim-runtime_2:7.3.346-1 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -466,12 +463,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -480,24 +477,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture kfreebsd-i386
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -518,20 +510,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -542,43 +534,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/src'
-installing to /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -610,58 +604,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_kfreebsd-i386.deb'.
- dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org> >../r-bioc-limma_3.8.3-1_kfreebsd-i386.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../r-bioc-limma_3.10.0-1_kfreebsd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110814-1217
+Build finished at 20111104-0545
-r-bioc-limma_3.8.3-1_kfreebsd-i386.changes:
+r-bioc-limma_3.10.0-1_kfreebsd-i386.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: kfreebsd-i386
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
-Maintainer: kfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org>
+Maintainer: kfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- dcdc789e93d1e968a95fa9eb5378f0c7a9e09aaf 1400828 r-bioc-limma_3.8.3-1_kfreebsd-i386.deb
+ 915161a2756b69d65a8ce0c91e68c6595241d8b6 1472518 r-bioc-limma_3.10.0-1_kfreebsd-i386.deb
Checksums-Sha256:
- 57b5a35b64694e313e01aea3712e5c438cf81001ea51d131ed59b1cea343676d 1400828 r-bioc-limma_3.8.3-1_kfreebsd-i386.deb
+ ff5d647d9c9080cf682394a799d7dc845c2ddf7218189cd2507ccf0362f88af6 1472518 r-bioc-limma_3.10.0-1_kfreebsd-i386.deb
Files:
- 65e416786ac90569976acd3921fdd081 1400828 gnu-r optional r-bioc-limma_3.8.3-1_kfreebsd-i386.deb
+ f7db9a27b3d28e93256a4b28097aa89e 1472518 gnu-r optional r-bioc-limma_3.10.0-1_kfreebsd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_kfreebsd-i386.deb
-──────────────────────────────────────
+r-bioc-limma_3.10.0-1_kfreebsd-i386.deb
+───────────────────────────────────────
new debian package, version 2.0.
- size 1400828 bytes: control archive= 1516 bytes.
- 777 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1472518 bytes: control archive= 1544 bytes.
+ 778 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: kfreebsd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1626
- Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.1~)
+ Installed-Size: 1618
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -673,50 +667,51 @@ r-bioc-limma_3.8.3-1_kfreebsd-i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-08-14 12:17 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 1006 2011-08-14 12:17 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1053 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5947 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5524 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2854 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 505 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8120 2011-08-14 12:17 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-08-14 12:17 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 173282 2011-08-14 12:17 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3745 2011-08-14 12:17 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 84899 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 45616 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 687780 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-08-14 12:17 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1351 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 452418 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3254 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2363 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-08-14 12:17 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-08-14 12:17 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9360 2011-08-14 12:17 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2117 2011-08-14 12:16 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 234 2011-08-14 12:16 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1901 2011-11-04 05:45 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 967 2011-11-04 05:45 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1054 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6023 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5603 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 216 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 518 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8120 2011-11-04 05:45 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-11-04 05:45 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197390 2011-11-04 05:45 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3789 2011-11-04 05:45 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 87742 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 737661 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-11-04 05:45 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 1984 2011-11-04 05:45 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1348 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 457763 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3270 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6221 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2392 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9458 2011-11-04 05:45 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2118 2011-11-04 05:45 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 329 2011-11-04 05:45 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -730,31 +725,30 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ki-sbuild-1313324016-67786/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1320385413-65390/build/buildd-r-bioc-limma_3.10.0-1-kfreebsd-i386-D2oSBO
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
- gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
- intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0*
- libice6* libjpeg62* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
- libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
- libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data*
- libthai0* libtiff4* libunistring0* libx11-6* libx11-data* libxau6*
- libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2*
- libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev*
- tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip*
- zlib1g-dev*
-0 upgraded, 0 newly installed, 73 to remove and 0 not upgraded.
-After this operation, 116 MB disk space will be freed.
-(Reading database ... 16079 files and directories currently installed.)
+ gettext-base* gfortran* gfortran-4.6* html2text* intltool-debian*
+ libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3* libdatrie1*
+ libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0* libice6* libjpeg8*
+ libjpeg8-dev* liblapack-dev* liblapack3gf* libmagic1* libncurses5-dev*
+ libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0*
+ libpipeline1* libpixman-1-0* libpng12-dev* libreadline-dev*
+ libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev*
+ libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
+ libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
+ libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
+ ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 71 to remove and 7 not upgraded.
+After this operation, 111 MB disk space will be freed.
+(Reading database ... 17718 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -783,10 +777,6 @@ Removing gettext ...
Removing gettext-base ...
Removing gfortran ...
Removing gfortran-4.6 ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
Removing html2text ...
Purging configuration files for html2text ...
Removing liblapack-dev ...
@@ -816,13 +806,10 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62 ...
Removing libjpeg8-dev ...
Removing libjpeg8 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
Removing libncurses5-dev ...
Removing libpaper-utils ...
Removing libpaper1 ...
@@ -830,14 +817,17 @@ Purging configuration files for libpaper1 ...
Removing libpcre3-dev ...
Removing libpcrecpp0 ...
Purging configuration files for libpcrecpp0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
+Removing man-db ...
+Purging configuration files for man-db ...
Removing libpipeline1 ...
Purging configuration files for libpipeline1 ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
Removing libpng12-dev ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
Removing libthai-data ...
+Removing libtinfo-dev ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libxss1 ...
@@ -872,6 +862,7 @@ Removing x11-common ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
Removing zlib1g-dev ...
@@ -881,18 +872,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: kfreebsd-i386
-Build-Space: 4768
-Build-Time: 25
+Build-Space: 5028
+Build-Time: 30
Distribution: sid
-Install-Time: 191
-Job: r-bioc-limma_3.8.3-1
+Install-Time: 90
+Job: r-bioc-limma_3.10.0-1
Package: r-bioc-limma
-Package-Time: 228
-Source-Version: 3.8.3-1
-Space: 4768
+Package-Time: 140
+Source-Version: 3.10.0-1
+Space: 5028
Status: successful
-Version: 3.8.3-1
+Version: 3.10.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110814-1217
-Build needed 00:03:48, 4768k disc space
-Signature with key '6B8016EE' requested:
+Finished at 20111104-0545
+Build needed 00:02:20, 5028k disc space
+Signature with key 'D859A500' requested:
diff --git a/mips.log b/mips.log
index adbe4a5..c6a65a8 100644
--- a/mips.log
+++ b/mips.log
@@ -1,68 +1,68 @@
-From buildd2 at lucatelli.debian.org Sun Aug 14 12:23:46 2011
+From buildd2 at lucatelli.debian.org Fri Nov 04 16:46:50 2011
Return-path: <buildd2 at lucatelli.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
- id 1QsZjF-0007Vt-LU
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:23:46 +0000
+ id 1RMMuo-0005rQ-Ax
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 16:46:50 +0000
Received: from lucatelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4141])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=lucatelli.debian.org,
EMAIL=hostmaster at lucatelli.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
- id 1QsZjD-0005zS-Nb
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:23:44 +0000
+ id 1RMMum-0006sG-V8
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 16:46:49 +0000
Received: from buildd2 by lucatelli.debian.org with local (Exim 4.69)
- (envelope-from <buildd2 at lucatelli.debian.org>) id 1QsZjB-0005R0-75
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:23:41 +0000
+ (envelope-from <buildd2 at lucatelli.debian.org>) id 1RMChd-0005Dg-L9
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 05:52:33 +0000
From: buildd on lucatelli <buildd2 at lucatelli.debian.org>
To: logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on mips (dist=sid)
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on mips (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1QsZjB-0005R0-75 at lucatelli.debian.org>
-Date: Sun, 14 Aug 2011 12:23:41 +0000
+Message-Id: <E1RMChd-0005Dg-L9 at lucatelli.debian.org>
+Date: Fri, 04 Nov 2011 05:52:33 +0000
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lucatelli.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (mips) 14 Aug 2011 12:14 ║
+║ r-bioc-limma 3.10.0-1 (mips) 04 Nov 2011 05:40 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
+Source Version: 3.10.0-1
Architecture: mips
Get:1 http://mirror-ubc.debian.org unstable InRelease [146 kB]
Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://mirror-ubc.debian.org unstable/main Sources [5431 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [5890 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5431 kB]
-Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [52.5 kB]
-Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [95.7 kB]
-Get:8 http://mirror-ubc.debian.org unstable/main mips Packages [7391 kB]
-Get:9 http://mirror-ubc.debian.org unstable/contrib mips Packages [55.0 kB]
+Get:5 http://incoming.debian.org Release [1604 B]
+Get:6 http://incoming.debian.org unstable/main Sources [5890 kB]
+Get:7 http://mirror-ubc.debian.org unstable/contrib Sources [56.9 kB]
+Get:8 http://mirror-ubc.debian.org unstable/non-free Sources [103 kB]
+Get:9 http://mirror-ubc.debian.org unstable/main mips Packages [7603 kB]
+Get:10 http://mirror-ubc.debian.org unstable/contrib mips Packages [55.8 kB]
Ign http://mirror-ubc.debian.org unstable/contrib TranslationIndex
-Get:10 http://mirror-ubc.debian.org unstable/main TranslationIndex [2185 B]
+Get:11 http://mirror-ubc.debian.org unstable/main TranslationIndex [2045 B]
Ign http://mirror-ubc.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
-Get:13 http://incoming.debian.org unstable/main mips Packages [7391 kB]
-Get:14 http://incoming.debian.org unstable/contrib mips Packages [55.0 kB]
+Get:12 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:14 http://incoming.debian.org unstable/main mips Packages [7603 kB]
+Get:15 http://incoming.debian.org unstable/contrib mips Packages [55.8 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
-Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [25.0 kB]
-Get:18 http://incoming.debian.org Packages [110 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Get:16 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
+Get:17 http://incoming.debian.org Sources [31.6 kB]
+Get:18 http://incoming.debian.org Packages [571 kB]
Ign http://incoming.debian.org Translation-en
-Fetched 26.5 MB in 1min 13s (359 kB/s)
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Fetched 28.3 MB in 1min 44s (272 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,11 +83,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 1s (793 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 1s (836 kB/s)
Download complete and in download only mode
Check arch
@@ -101,18 +101,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -124,62 +124,65 @@ Checking for already installed dependencies...
base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+dpkg: already installed (1.16.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-09-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-4)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
sysvinit-utils: already installed (2.88dsf-13.11)
sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
+tar: already installed (1.26-2)
bsdutils: already installed (1:2.19.1-5)
mount: already installed (2.19.1-5)
util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-16)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -188,286 +191,331 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 4 not upgraded.
-Need to get 50.7 MB of archives.
-After this operation, 125 MB of additional disk space will be used.
-Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.0-3 [35.6 kB]
-Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-4 [227 kB]
-Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.4-3 [27.0 kB]
-Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.0.1-7 [135 kB]
-Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.6-1 [416 kB]
-Get:6 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:7 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:8 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-3 [286 kB]
-Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.6.1-6 [231 kB]
-Get:11 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.7-2 [50.6 kB]
-Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.22.2-1 [339 kB]
-Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.46-3 [183 kB]
-Get:15 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.6-3 [16.6 kB]
-Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-3 [22.3 kB]
-Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.7-3 [38.0 kB]
-Get:18 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:19 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.4-1 [858 kB]
-Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.7-3 [14.5 kB]
-Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.7-3 [9354 B]
-Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-2 [30.2 kB]
-Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.10.2-6.1 [952 kB]
-Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.6-1 [1509 kB]
-Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.15-2 [41.8 kB]
-Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.2.0-3 [56.7 kB]
-Get:28 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.8.0-3 [334 kB]
-Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.28.4-2 [418 kB]
-Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 8.12-4 [113 kB]
-Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.0-2 [28.2 kB]
-Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-3 [48.4 kB]
-Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-2 [16.5 kB]
-Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-2 [189 kB]
-Get:35 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 8.2.3 [206 kB]
-Get:36 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-6 [1152 kB]
-Get:37 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.0.2-2 [990 kB]
-Get:38 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.04-5+b1 [239 kB]
-Get:39 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.04-5+b1 [49.9 kB]
-Get:40 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-4 [142 kB]
-Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-4 [858 kB]
-Get:42 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
-Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-1 [110 kB]
-Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-4 [415 kB]
-Get:45 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-4 [2025 kB]
-Get:46 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:47 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:48 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
-Get:49 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:50 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:51 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.1-6 [4365 kB]
-Get:52 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.1-2 [1126 B]
-Get:53 http://mirror-ubc.debian.org/debian/ unstable/main libblas3gf mips 1.2.20110419-2 [203 kB]
-Get:54 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev mips 1.2.20110419-2 [243 kB]
-Get:55 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.5-6 [37.9 kB]
-Get:56 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg62 mips 6b1-2 [92.9 kB]
-Get:57 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 mips 8c-2 [144 kB]
-Get:58 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev mips 8c-2 [257 kB]
-Get:59 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3gf mips 3.3.1-1 [4250 kB]
-Get:60 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev mips 3.3.1-1 [4908 kB]
-Get:61 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-1 [509 kB]
-Get:62 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu1 [21.3 kB]
-Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu1 [18.2 kB]
-Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev mips 8.12-4 [318 kB]
-Get:65 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
-Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.46-3 [275 kB]
-Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-2 [269 kB]
-Get:68 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2-2 [880 B]
-Get:69 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 mips 3.9.5-1 [191 kB]
-Get:70 http://mirror-ubc.debian.org/debian/ unstable/main zip mips 3.0-4 [332 kB]
-Get:71 http://mirror-ubc.debian.org/debian/ unstable/main unzip mips 6.0-5 [189 kB]
-Get:72 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:73 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.10-1 [1610 kB]
-Get:74 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.10-1 [1172 kB]
-Get:75 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core mips 2.13.1-1 [14.6 MB]
-Get:76 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 77 newly installed, 0 to remove and 26 not upgraded.
+Need to get 71.3 MB of archives.
+After this operation, 123 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 mips 4.6.2-3 [26.2 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6-base mips 4.6.2-3 [137 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 mips 1:4.6.2-3 [69.5 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.6 mips 4.6.2-3 [3760 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.6-dev mips 4.6.2-3 [1724 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.6 mips 4.6.2-3 [6294 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6 mips 4.6.2-3 [4027 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 mips 4.6.2-3 [301 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.0-4 [35.3 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main liblzma5 mips 5.1.1alpha+20110809-3 [204 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-4 [227 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.8-1 [1565 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-5 [858 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-2 [104 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.4-3 [27.0 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.0.1-7.2 [143 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.7-2 [421 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-3 [286 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.6.2-3 [231 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.7-2 [50.6 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.23.8-1 [364 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.46-3 [183 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.6-3 [16.6 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-3 [22.3 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.7-3 [38.0 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.4-2 [858 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.7-3 [14.5 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.7-3 [9354 B]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-2 [30.2 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.10.2-6.1 [952 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.15-2 [41.8 kB]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.2.0-3 [56.7 kB]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.8.0-3 [334 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.29.4-2 [434 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 8.12-4 [113 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.0-2 [28.2 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 mips 8c-2 [144 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 mips 3.9.5-2 [190 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-3 [48.4 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-2 [16.5 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-2 [189 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 8.2.3 [206 kB]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-6 [1152 kB]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.0.2-2 [990 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.09-2 [249 kB]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.09-2 [51.8 kB]
+Get:54 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-5 [136 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:56 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
+Get:57 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-5 [2032 kB]
+Get:58 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.2-3 [4365 kB]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.1-3 [1132 B]
+Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libblas3gf mips 1.2.20110419-2 [203 kB]
+Get:65 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev mips 1.2.20110419-2 [243 kB]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.5-7 [37.3 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev mips 8c-2 [257 kB]
+Get:68 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3gf mips 3.3.1-1 [4250 kB]
+Get:69 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev mips 3.3.1-1 [4908 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo-dev mips 5.9-2 [71.9 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-2 [438 kB]
+Get:72 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu1 [21.3 kB]
+Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu1 [18.2 kB]
+Get:74 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev mips 8.12-4 [318 kB]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.46-3 [275 kB]
+Get:77 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-7 [271 kB]
+Get:78 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2-7 [890 B]
+Get:79 http://mirror-ubc.debian.org/debian/ unstable/main zip mips 3.0-4 [332 kB]
+Get:80 http://mirror-ubc.debian.org/debian/ unstable/main unzip mips 6.0-5 [189 kB]
+Get:81 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:82 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.10-1 [1610 kB]
+Get:83 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.10-1 [1172 kB]
+Get:84 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core mips 2.14.0-1 [18.6 MB]
+Get:85 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 50.7 MB in 8s (6033 kB/s)
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10666 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_mips.deb) ...
-Selecting previously deselected package libpcre3.
+Fetched 71.3 MB in 13s (5316 kB/s)
+(Reading database ... 10544 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-15 (using .../libgomp1_4.6.2-3_mips.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.1-15 (using .../gcc-4.6-base_4.6.2-3_mips.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.2-3) ...
+(Reading database ... 10545 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-15 (using .../libgcc1_1%3a4.6.2-3_mips.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.2-3) ...
+(Reading database ... 10545 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-15 (using .../cpp-4.6_4.6.2-3_mips.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-15 (using .../libstdc++6-4.6-dev_4.6.2-3_mips.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.1-15 (using .../g++-4.6_4.6.2-3_mips.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.1-15 (using .../gcc-4.6_4.6.2-3_mips.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.1-15 (using .../libstdc++6_4.6.2-3_mips.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.2-3) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10545 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_mips.deb) ...
+Selecting previously unselected package liblzma5.
+Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_mips.deb) ...
+Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_mips.deb) ...
-Selecting previously deselected package libdatrie1.
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_mips.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_mips.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_mips.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mips.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mips.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_mips.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_mips.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_mips.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mips.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_mips.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_mips.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mips.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_mips.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_mips.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mips.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mips.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mips.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_mips.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_mips.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_mips.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mips.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mips.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mips.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mips.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mips.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_mips.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_mips.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_mips.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_mips.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_mips.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mips.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mips.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_mips.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_mips.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mips.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_mips.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mips.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mips.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mips.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_mips.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_mips.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mips.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_mips.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_mips.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_mips.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_mips.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_mips.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_mips.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mips.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mips.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_mips.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_mips.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_mips.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_mips.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_mips.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_mips.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mips.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mips.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mips.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_mips.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_mips.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_mips.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mips.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mips.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mips.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mips.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_mips.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_mips.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mips.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mips.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mips.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mips.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mips.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mips.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mips.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mips.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_mips.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_mips.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_mips.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_mips.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mips.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mips.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_mips.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_mips.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-3) ...
+Setting up cpp-4.6 (4.6.2-3) ...
+Setting up gcc-4.6 (4.6.2-3) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-6) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
@@ -477,35 +525,31 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-6) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -513,9 +557,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -523,20 +566,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-3) ...
+Setting up g++-4.6 (4.6.2-3) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 26 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.35.4-dsa-octeon mips (mips64)
-Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.52.20110606-2 binutils-dev_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-4 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc6_2.13-16 libc6-dev_2.13-16 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111004-2 dpkg-dev_1.16.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.8 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1 dpkg-dev_1.16.1 e2fslibs_1.42~WIP-2011-10-09-1 e2fsprogs_1.42~WIP-2011-10-09-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-09-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-09-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -547,12 +592,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd2/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -561,14 +606,14 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS =
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS = -Wl,-z,relro
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture mips
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -576,9 +621,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -599,10 +644,10 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -610,9 +655,9 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -623,43 +668,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/src'
-installing to /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/src'
+installing to /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -691,22 +738,22 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_mips.deb'.
- dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org> >../r-bioc-limma_3.8.3-1_mips.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org> >../r-bioc-limma_3.10.0-1_mips.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110814-1223
+Build finished at 20111104-0552
-r-bioc-limma_3.8.3-1_mips.changes:
+r-bioc-limma_3.10.0-1_mips.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mips
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
Maintainer: mips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org>
@@ -714,35 +761,35 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- 5cf5dd87498c6aaa90ea4d5fc0bd8a76d76bf19a 1398876 r-bioc-limma_3.8.3-1_mips.deb
+ 91c854d243f07a3ca8525d61533d2c8dc3a9a811 1469808 r-bioc-limma_3.10.0-1_mips.deb
Checksums-Sha256:
- 04d496354b1c37ba9ac6d9c2091b154b0a781ba1984026bc14f1e021760aeff8 1398876 r-bioc-limma_3.8.3-1_mips.deb
+ 84c9d39332e7c5da319bba2a26ebe2638493c80a666fde6000bee12f46f9d69a 1469808 r-bioc-limma_3.10.0-1_mips.deb
Files:
- d24fb1d53545f5f12d8449e9c7ba6433 1398876 gnu-r optional r-bioc-limma_3.8.3-1_mips.deb
+ 4ffca6989ce4106a37e99bd88b4a043b 1469808 gnu-r optional r-bioc-limma_3.10.0-1_mips.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_mips.deb
-─────────────────────────────
+r-bioc-limma_3.10.0-1_mips.deb
+──────────────────────────────
new debian package, version 2.0.
- size 1398876 bytes: control archive= 1509 bytes.
- 766 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1469808 bytes: control archive= 1544 bytes.
+ 767 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: mips
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1676
- Depends: libc6 (>= 2.2), r-base-core (>= 2.13.1~)
+ Installed-Size: 1675
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -754,50 +801,51 @@ r-bioc-limma_3.8.3-1_mips.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/
-drwxr-xr-x root/root 0 2011-08-14 12:20 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-14 12:20 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-08-14 12:20 ./usr/lib/R/site-library/limma/NAMESPACE
--rwxr-xr-x root/root 1230 2011-08-14 12:21 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 3734 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 384 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 173273 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma.rdb
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 6150 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3267 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2363 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1345 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 450214 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/limma.rdb
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34039 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1008 2011-08-14 12:20 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 687780 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 673 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 45616 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84899 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/limma.Rnw
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10704 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 9360 2011-08-14 12:22 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 2854 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 1053 2011-08-14 12:20 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 505 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 5524 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 5947 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/Rd.rds
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 234 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2117 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2011-11-04 05:51 ./
+drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 05:49 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 05:49 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 05:50 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1901 2011-11-04 05:49 ./usr/lib/R/site-library/limma/NAMESPACE
+-rwxr-xr-x root/root 1230 2011-11-04 05:49 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-11-04 05:49 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 3787 2011-11-04 05:49 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 383 2011-11-04 05:49 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197383 2011-11-04 05:49 ./usr/lib/R/site-library/limma/R/limma.rdb
+drwxr-xr-x root/root 0 2011-11-04 05:50 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 6221 2011-11-04 05:50 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3285 2011-11-04 05:50 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2392 2011-11-04 05:50 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1351 2011-11-04 05:49 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 455940 2011-11-04 05:50 ./usr/lib/R/site-library/limma/help/limma.rdb
+drwxr-xr-x root/root 0 2011-11-04 05:50 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-11-04 05:50 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2011-11-04 05:50 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1984 2011-11-04 05:49 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 969 2011-11-04 05:49 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-04 05:50 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 737661 2011-11-04 05:49 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 673 2011-11-04 05:49 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 42743 2011-11-04 05:49 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 87742 2011-11-04 05:49 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 1711 2011-11-04 05:49 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2011-11-04 05:51 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 9458 2011-11-04 05:50 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 2886 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 216 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 1054 2011-11-04 05:49 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 518 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 5603 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 6023 2011-11-04 05:50 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 05:51 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 329 2011-11-04 05:47 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2118 2011-11-04 05:47 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -811,7 +859,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mips-sbuild-aad2c9e9-f15f-4d76-9af3-bda365a301c9/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64
+Purging /var/lib/schroot/mount/sid-mips-sbuild-b5bbb0be-56f7-48bb-b5ee-eb569ab91352/build/buildd2-r-bioc-limma_3.10.0-1-mips-ZQLkow
Not cleaning session: cloned chroot in use
Can't open average time db /var/lib/sbuild/avg-build-times
Can't open average space db /var/lib/sbuild/avg-build-space
@@ -821,81 +869,78 @@ Can't open average space db /var/lib/sbuild/avg-build-space
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mips
-Build-Space: 5080
-Build-Time: 231
+Build-Space: 5304
+Build-Time: 292
Distribution: sid
-Install-Time: 190
-Job: r-bioc-limma_3.8.3-1
+Install-Time: 276
+Job: r-bioc-limma_3.10.0-1
Package: r-bioc-limma
-Package-Time: 539
-Source-Version: 3.8.3-1
-Space: 5080
+Package-Time: 731
+Source-Version: 3.10.0-1
+Space: 5304
Status: successful
-Version: 3.8.3-1
+Version: 3.10.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110814-1223
-Build needed 00:08:59, 5080k disc space
+Finished at 20111104-0552
+Build needed 00:12:11, 5304k disc space
Signature with key 'FDFDA76A' requested:
-From buildd at monteverdi.ayous.org Sun Aug 14 12:48:59 2011
-Return-path: <buildd at monteverdi.ayous.org>
-Received: from monteverdi.ayous.org ([2001:a60:f006:deb:20a:1ff:fe00:987]
+From buildd at phrixos.ayous.org Fri Nov 04 05:46:01 2011
+Return-path: <buildd at phrixos.ayous.org>
+Received: from phrixos.ayous.org ([2001:a60:f006:deb:223:9eff:fe00:f7c]
helo=alius.ayous.org)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at monteverdi.ayous.org>)
- id 1Qsa7N-0002GC-Hd
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:48:59 +0000
-Received: from buildd by monteverdi.ayous.org with local (Exim 4.72)
- (envelope-from <buildd at monteverdi.ayous.org>)
- id 1QsZj9-0000UK-II; Sun, 14 Aug 2011 12:23:39 +0000
-Date: Sun, 14 Aug 2011 12:23:39 +0000
-Message-Id: <E1QsZj9-0000UK-II at monteverdi.ayous.org>
-From: buildd on monteverdi <buildd at monteverdi.ayous.org>
-To: aba+buildd_monteverdi at not.so.argh.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on mipsel (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at phrixos.ayous.org>)
+ id 1RMCbH-0007MT-OE
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 05:46:01 +0000
+Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
+ (envelope-from <buildd at phrixos.ayous.org>)
+ id 1RMCbE-0007oP-Dp; Fri, 04 Nov 2011 05:45:56 +0000
+Date: Fri, 04 Nov 2011 05:45:56 +0000
+Message-Id: <E1RMCbE-0007oP-Dp at phrixos.ayous.org>
+From: buildd on phrixos <buildd at phrixos.ayous.org>
+To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on monteverdi.ayous.org
+sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (mipsel) 14 Aug 2011 12:13 ║
+║ r-bioc-limma 3.10.0-1 (mipsel) 04 Nov 2011 05:38 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
Architecture: mipsel
-Ign http://incoming.debian.org unstable InRelease
-Ign http://incoming.debian.org InRelease
-Ign http://mirror.ayous.org unstable InRelease
-Get:1 http://incoming.debian.org unstable Release.gpg [836 B]
-Get:2 http://mirror.ayous.org unstable Release.gpg [836 B]
-Get:3 http://mirror.ayous.org unstable Release [145 kB]
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable Release [145 kB]
+Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-4f696010-c1aa-4162-8960-af4b53592dfb/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14
+Start Time: 20111104-0538
+Get:1 http://incoming.debian.org unstable InRelease [146 kB]
+Get:2 http://mirror.ayous.org unstable InRelease [146 kB]
Ign http://mirror.ayous.org unstable/contrib TranslationIndex
-Get:6 http://mirror.ayous.org unstable/main TranslationIndex [2185 B]
-Get:7 http://mirror.ayous.org unstable/main Sources [6850 kB]
-Get:8 http://incoming.debian.org Release [1604 B]
+Get:3 http://mirror.ayous.org unstable/main TranslationIndex [2045 B]
+Get:4 http://mirror.ayous.org unstable/main Sources [7421 kB]
+Ign http://incoming.debian.org InRelease
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:9 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
-Get:10 http://incoming.debian.org unstable/main Sources [6850 kB]
-Get:11 http://incoming.debian.org unstable/contrib Sources [62.0 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [115 kB]
-Get:13 http://incoming.debian.org unstable/main mipsel Packages [9707 kB]
-Get:14 http://mirror.ayous.org unstable/contrib Sources [62.0 kB]
-Get:15 http://mirror.ayous.org unstable/non-free Sources [115 kB]
-Get:16 http://mirror.ayous.org unstable/main mipsel Packages [9707 kB]
-Get:17 http://incoming.debian.org unstable/contrib mipsel Packages [67.0 kB]
-Get:18 http://mirror.ayous.org unstable/contrib mipsel Packages [67.0 kB]
+Get:5 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
+Get:6 http://incoming.debian.org Release.gpg [836 B]
+Get:7 http://incoming.debian.org unstable/main Sources [7421 kB]
+Get:8 http://mirror.ayous.org unstable/contrib Sources [67.4 kB]
+Get:9 http://mirror.ayous.org unstable/non-free Sources [124 kB]
+Get:10 http://mirror.ayous.org unstable/main mipsel Packages [9966 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [67.4 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [124 kB]
+Get:13 http://incoming.debian.org unstable/main mipsel Packages [9966 kB]
+Get:14 http://mirror.ayous.org unstable/contrib mipsel Packages [68.1 kB]
Ign http://mirror.ayous.org unstable/contrib Translation-en
-Get:19 http://incoming.debian.org Sources [28.7 kB]
-Get:20 http://incoming.debian.org Packages [172 kB]
-Ign http://incoming.debian.org Translation-en
+Get:15 http://incoming.debian.org unstable/contrib mipsel Packages [68.1 kB]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [36.6 kB]
+Get:18 http://incoming.debian.org Packages [875 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
-Fetched 34.1 MB in 2min 49s (202 kB/s)
+Ign http://incoming.debian.org Translation-en
+Fetched 36.5 MB in 1min 3s (576 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -916,79 +961,30 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 1min 3s (14.6 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 3s (289 kB/s)
Download complete and in download only mode
Check arch
──────────
+** Using build dependencies supplied by package:
+Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install r-bioc-limma build dependencies (internal resolver) │
+│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
-gzip: already installed (1.4-1)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-2)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-5)
-mount: already installed (2.19.1-5)
-util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-15)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+Checking for already installed source dependencies...
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
-Checking for dependency conflicts...
+Using default version 2.14.0-1
+Checking for source dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
@@ -998,15 +994,15 @@ The following extra packages will be installed:
gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
@@ -1024,322 +1020,331 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
libstdc++6-4.6-dev
-8 upgraded, 76 newly installed, 0 to remove and 11 not upgraded.
-Need to get 66.9 MB of archives.
-After this operation, 125 MB of additional disk space will be used.
-Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.1-6 [26.2 kB]
-Get:2 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.1-6 [134 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.1-6 [68.5 kB]
-Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.1-6 [3750 kB]
-Get:5 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.1-6 [1715 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.1-6 [6180 kB]
-Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.1-6 [4067 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.1-6 [301 kB]
-Get:9 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-3 [35.7 kB]
-Get:10 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-4 [227 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7 [134 kB]
-Get:13 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.6-1 [416 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:15 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:17 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.1-6 [231 kB]
-Get:19 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:20 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
-Get:21 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.22.2-1 [338 kB]
-Get:22 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
-Get:23 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
-Get:24 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
-Get:25 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
-Get:26 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:27 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-1 [858 kB]
-Get:28 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
-Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
-Get:30 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
-Get:31 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
-Get:32 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.6-1 [1503 kB]
-Get:33 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:34 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
-Get:35 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
-Get:36 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
-Get:37 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.28.4-2 [418 kB]
-Get:38 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-4 [112 kB]
-Get:39 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
-Get:40 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
-Get:41 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
-Get:42 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
-Get:43 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
-Get:44 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
-Get:45 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
-Get:46 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5+b1 [238 kB]
-Get:47 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5+b1 [49.9 kB]
-Get:48 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-4 [133 kB]
-Get:49 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-4 [858 kB]
-Get:50 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:51 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
-Get:52 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-4 [411 kB]
-Get:53 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-4 [2008 kB]
-Get:54 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:55 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:56 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
-Get:57 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:58 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:59 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.1-6 [4379 kB]
-Get:60 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.1-2 [1130 B]
-Get:61 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
-Get:62 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
-Get:63 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-6 [38.1 kB]
-Get:64 http://mirror.ayous.org/debian/ unstable/main libjpeg62 mipsel 6b1-2 [93.7 kB]
-Get:65 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
-Get:66 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
-Get:67 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
-Get:68 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
-Get:69 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-1 [506 kB]
-Get:70 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
-Get:71 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
-Get:72 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-4 [316 kB]
-Get:73 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
-Get:74 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
-Get:75 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-2 [270 kB]
-Get:76 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-2 [882 B]
-Get:77 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-1 [191 kB]
-Get:78 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
-Get:79 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
-Get:80 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:81 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
-Get:82 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
-Get:83 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.13.1-1 [14.6 MB]
-Get:84 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+8 upgraded, 77 newly installed, 0 to remove and 22 not upgraded.
+Need to get 71.1 MB of archives.
+After this operation, 123 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.2-3 [26.2 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.2-3 [136 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.2-3 [68.3 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.2-3 [3778 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.2-3 [1716 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.2-3 [6168 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.2-3 [4041 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.2-3 [295 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-4 [35.2 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main liblzma5 mipsel 5.1.1alpha+20110809-3 [204 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-4 [227 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.8-1 [1561 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-5 [858 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-2 [103 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7.2 [142 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.7-2 [422 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:20 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
+Get:22 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.2-3 [230 kB]
+Get:23 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:24 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
+Get:25 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.23.8-1 [363 kB]
+Get:26 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
+Get:27 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
+Get:28 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
+Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
+Get:30 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:31 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-2 [858 kB]
+Get:32 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
+Get:33 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
+Get:34 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
+Get:35 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
+Get:36 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:37 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
+Get:38 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
+Get:39 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
+Get:40 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.29.4-2 [434 kB]
+Get:41 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-4 [112 kB]
+Get:42 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
+Get:43 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
+Get:44 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-2 [191 kB]
+Get:45 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
+Get:46 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
+Get:47 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
+Get:48 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
+Get:49 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
+Get:50 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
+Get:51 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
+Get:52 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.09-2 [247 kB]
+Get:53 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.09-2 [52.0 kB]
+Get:54 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-5 [133 kB]
+Get:55 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:56 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:57 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-5 [2008 kB]
+Get:58 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:59 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:60 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:61 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:62 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.2-3 [4378 kB]
+Get:63 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.1-3 [1134 B]
+Get:64 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
+Get:65 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
+Get:66 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-7 [37.9 kB]
+Get:67 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
+Get:68 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
+Get:69 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
+Get:70 http://mirror.ayous.org/debian/ unstable/main libtinfo-dev mipsel 5.9-2 [70.2 kB]
+Get:71 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-2 [435 kB]
+Get:72 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
+Get:73 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
+Get:74 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-4 [316 kB]
+Get:75 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
+Get:76 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
+Get:77 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-7 [270 kB]
+Get:78 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-7 [888 B]
+Get:79 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
+Get:80 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
+Get:81 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:82 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
+Get:83 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
+Get:84 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.14.0-1 [18.6 MB]
+Get:85 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 66.9 MB in 13s (5012 kB/s)
-(Reading database ... 10806 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-5 (using .../libgomp1_4.6.1-6_mipsel.deb) ...
+Fetched 71.1 MB in 45s (1572 kB/s)
+(Reading database ... 10569 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-15 (using .../libgomp1_4.6.2-3_mipsel.deb) ...
Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-5 (using .../gcc-4.6-base_4.6.1-6_mipsel.deb) ...
+Preparing to replace gcc-4.6-base 4.6.1-15 (using .../gcc-4.6-base_4.6.2-3_mipsel.deb) ...
Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.1-6) ...
-(Reading database ... 10806 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-5 (using .../libgcc1_1%3a4.6.1-6_mipsel.deb) ...
+Setting up gcc-4.6-base (4.6.2-3) ...
+(Reading database ... 10570 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-15 (using .../libgcc1_1%3a4.6.2-3_mipsel.deb) ...
Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.1-6) ...
-(Reading database ... 10806 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-5 (using .../cpp-4.6_4.6.1-6_mipsel.deb) ...
+Setting up libgcc1 (1:4.6.2-3) ...
+(Reading database ... 10570 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-15 (using .../cpp-4.6_4.6.2-3_mipsel.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-5 (using .../libstdc++6-4.6-dev_4.6.1-6_mipsel.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-15 (using .../libstdc++6-4.6-dev_4.6.2-3_mipsel.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-5 (using .../g++-4.6_4.6.1-6_mipsel.deb) ...
+Preparing to replace g++-4.6 4.6.1-15 (using .../g++-4.6_4.6.2-3_mipsel.deb) ...
Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-5 (using .../gcc-4.6_4.6.1-6_mipsel.deb) ...
+Preparing to replace gcc-4.6 4.6.1-15 (using .../gcc-4.6_4.6.2-3_mipsel.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-5 (using .../libstdc++6_4.6.1-6_mipsel.deb) ...
+Preparing to replace libstdc++6 4.6.1-15 (using .../libstdc++6_4.6.2-3_mipsel.deb) ...
Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.1-6) ...
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10806 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_mipsel.deb) ...
-Selecting previously deselected package libpcre3.
+Setting up libstdc++6 (4.6.2-3) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10570 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_mipsel.deb) ...
+Selecting previously unselected package liblzma5.
+Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_mipsel.deb) ...
+Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_mipsel.deb) ...
-Selecting previously deselected package libdatrie1.
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_mipsel.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_mipsel.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_mipsel.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mipsel.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mipsel.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_mipsel.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_mipsel.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_mipsel.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mipsel.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_mipsel.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_mipsel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mipsel.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_mipsel.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_mipsel.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mipsel.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mipsel.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mipsel.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_mipsel.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_mipsel.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_mipsel.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mipsel.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mipsel.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mipsel.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mipsel.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mipsel.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_mipsel.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_mipsel.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_mipsel.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_mipsel.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_mipsel.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mipsel.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mipsel.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_mipsel.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_mipsel.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mipsel.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_mipsel.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mipsel.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mipsel.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mipsel.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_mipsel.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_mipsel.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mipsel.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_mipsel.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_mipsel.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_mipsel.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_mipsel.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_5.09-2_mipsel.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_mipsel.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mipsel.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_mipsel.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_mipsel.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_mipsel.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_mipsel.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_mipsel.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_mipsel.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mipsel.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mipsel.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_mipsel.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_mipsel.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_mipsel.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mipsel.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mipsel.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mipsel.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mipsel.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_mipsel.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_mipsel.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mipsel.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mipsel.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mipsel.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mipsel.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mipsel.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mipsel.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mipsel.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_mipsel.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_mipsel.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_mipsel.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_mipsel.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mipsel.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mipsel.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_mipsel.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libgomp1 (4.6.1-6) ...
-Setting up cpp-4.6 (4.6.1-6) ...
-Setting up gcc-4.6 (4.6.1-6) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_mipsel.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-3) ...
+Setting up cpp-4.6 (4.6.2-3) ...
+Setting up gcc-4.6 (4.6.2-3) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-6) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
@@ -1349,35 +1354,31 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-6) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -1385,9 +1386,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -1395,22 +1395,18 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up libstdc++6-4.6-dev (4.6.1-6) ...
-Setting up g++-4.6 (4.6.1-6) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-3) ...
+Setting up g++-4.6 (4.6.2-3) ...
Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.39-2-loongson-2e mipsel (mips64)
-Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-15 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.52.20110606-2 binutils-dev_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-15 libc-dev-bin_2.13-15 libc6_2.13-15 libc6-dev_2.13-15 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Checking correctness of source dependencies...
+Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
+Toolchain package versions: libc6-dev_2.13-21 dpkg-dev_1.16.1.1 linux-libc-dev_3.0.0-5 gcc-4.6_4.6.2-3 g++-4.6_4.6.2-3 binutils_2.21.90.20111004-2 libstdc++6-4.6-dev_4.6.2-3 libstdc++6_4.6.2-3
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-09-1 e2fsprogs_1.42~WIP-2011-10-09-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-09-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-09-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -1421,12 +1417,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -1435,24 +1431,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture mipsel
- fakeroot debian/rules clean
+ /usr/bin/fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -1474,9 +1465,9 @@ test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -1484,10 +1475,10 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
- fakeroot debian/rules binary-arch
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
+ /usr/bin/fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -1497,43 +1488,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
-installing to /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -1565,58 +1558,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org> >../r-bioc-limma_3.8.3-1_mipsel.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../r-bioc-limma_3.10.0-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110814-1223
+Build finished at 20111104-0545
-r-bioc-limma_3.8.3-1_mipsel.changes:
+r-bioc-limma_3.10.0-1_mipsel.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mipsel
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org>
+Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- 8f92784a8880ea765d8e8174f3d0a82bd7f2272c 1399324 r-bioc-limma_3.8.3-1_mipsel.deb
+ 627948648393c18bc0462b41103a2a9aca17e70a 1469010 r-bioc-limma_3.10.0-1_mipsel.deb
Checksums-Sha256:
- 5bc27d90999dd24ed3c422482db4f1c7dc5302af6e9b862a4000125b1af88b66 1399324 r-bioc-limma_3.8.3-1_mipsel.deb
+ a972b874ff9410f0f4afebf824de0e7212871f14652938f8814b5ef972211445 1469010 r-bioc-limma_3.10.0-1_mipsel.deb
Files:
- c79c6f2720e8d5a2013548df9e0debc7 1399324 gnu-r optional r-bioc-limma_3.8.3-1_mipsel.deb
+ a591488e1d766bdc6fb0dd7957c0f539 1469010 gnu-r optional r-bioc-limma_3.10.0-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_mipsel.deb
-───────────────────────────────
+r-bioc-limma_3.10.0-1_mipsel.deb
+────────────────────────────────
new debian package, version 2.0.
- size 1399324 bytes: control archive= 1513 bytes.
- 768 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1469010 bytes: control archive= 1539 bytes.
+ 769 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1676
- Depends: libc6 (>= 2.2), r-base-core (>= 2.13.1~)
+ Installed-Size: 1674
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -1628,50 +1621,51 @@ r-bioc-limma_3.8.3-1_mipsel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 687780 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 45616 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84899 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/limma.Rnw
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10704 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 3258 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 1345 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 6150 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 450060 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 2363 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 2854 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5947 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5524 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 505 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 1054 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/package.rds
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3743 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 173272 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 1872 2011-08-14 12:22 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 9360 2011-08-14 12:22 ./usr/lib/R/site-library/limma/INDEX
--rw-r--r-- root/root 1010 2011-08-14 12:22 ./usr/lib/R/site-library/limma/DESCRIPTION
--rwxr-xr-x root/root 1230 2011-08-14 12:22 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2117 2011-08-14 12:21 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 234 2011-08-14 12:21 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2118 2011-11-04 05:43 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 329 2011-11-04 05:43 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-11-04 05:44 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 05:44 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 971 2011-11-04 05:44 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 9458 2011-11-04 05:45 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2392 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 455737 2011-11-04 05:44 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1351 2011-11-04 05:44 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6221 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3278 2011-11-04 05:44 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rwxr-xr-x root/root 1230 2011-11-04 05:44 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-11-04 05:44 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-11-04 05:44 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197381 2011-11-04 05:44 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3787 2011-11-04 05:44 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2011-11-04 05:45 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 737661 2011-11-04 05:44 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 87742 2011-11-04 05:44 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 42743 2011-11-04 05:44 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 1711 2011-11-04 05:44 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2011-11-04 05:44 ./usr/lib/R/site-library/limma/doc/index.html
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 1984 2011-11-04 05:44 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 1901 2011-11-04 05:44 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 518 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 1055 2011-11-04 05:44 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5603 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 216 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 6023 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 2886 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/links.rds
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1680,31 +1674,9 @@ drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/r-bioc-limma/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-e35022f8-c753-492f-947e-8e272cf2abe5/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: mipsel
-Build-Space: 5080
-Build-Time: 129
-Distribution: sid
-Install-Time: 229
-Job: r-bioc-limma_3.8.3-1
-Package: r-bioc-limma
-Package-Time: 625
-Source-Version: 3.8.3-1
-Space: 5080
-Status: successful
-Version: 3.8.3-1
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-4f696010-c1aa-4162-8960-af4b53592dfb/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14
+Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110814-1223
-Build needed 00:10:25, 5080k disc space
+Finished at 20111104-0545
+Build needed 00:07:38, 5304k disc space
diff --git a/mipsel.log b/mipsel.log
index 1d0e1a2..f846dba 100644
--- a/mipsel.log
+++ b/mipsel.log
@@ -1,62 +1,59 @@
-From buildd at monteverdi.ayous.org Sun Aug 14 12:48:59 2011
-Return-path: <buildd at monteverdi.ayous.org>
-Received: from monteverdi.ayous.org ([2001:a60:f006:deb:20a:1ff:fe00:987]
+From buildd at phrixos.ayous.org Fri Nov 04 05:46:01 2011
+Return-path: <buildd at phrixos.ayous.org>
+Received: from phrixos.ayous.org ([2001:a60:f006:deb:223:9eff:fe00:f7c]
helo=alius.ayous.org)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at monteverdi.ayous.org>)
- id 1Qsa7N-0002GC-Hd
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:48:59 +0000
-Received: from buildd by monteverdi.ayous.org with local (Exim 4.72)
- (envelope-from <buildd at monteverdi.ayous.org>)
- id 1QsZj9-0000UK-II; Sun, 14 Aug 2011 12:23:39 +0000
-Date: Sun, 14 Aug 2011 12:23:39 +0000
-Message-Id: <E1QsZj9-0000UK-II at monteverdi.ayous.org>
-From: buildd on monteverdi <buildd at monteverdi.ayous.org>
-To: aba+buildd_monteverdi at not.so.argh.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on mipsel (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at phrixos.ayous.org>)
+ id 1RMCbH-0007MT-OE
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 05:46:01 +0000
+Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
+ (envelope-from <buildd at phrixos.ayous.org>)
+ id 1RMCbE-0007oP-Dp; Fri, 04 Nov 2011 05:45:56 +0000
+Date: Fri, 04 Nov 2011 05:45:56 +0000
+Message-Id: <E1RMCbE-0007oP-Dp at phrixos.ayous.org>
+From: buildd on phrixos <buildd at phrixos.ayous.org>
+To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on monteverdi.ayous.org
+sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (mipsel) 14 Aug 2011 12:13 ║
+║ r-bioc-limma 3.10.0-1 (mipsel) 04 Nov 2011 05:38 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
Architecture: mipsel
-Ign http://incoming.debian.org unstable InRelease
-Ign http://incoming.debian.org InRelease
-Ign http://mirror.ayous.org unstable InRelease
-Get:1 http://incoming.debian.org unstable Release.gpg [836 B]
-Get:2 http://mirror.ayous.org unstable Release.gpg [836 B]
-Get:3 http://mirror.ayous.org unstable Release [145 kB]
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable Release [145 kB]
+Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-4f696010-c1aa-4162-8960-af4b53592dfb/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14
+Start Time: 20111104-0538
+Get:1 http://incoming.debian.org unstable InRelease [146 kB]
+Get:2 http://mirror.ayous.org unstable InRelease [146 kB]
Ign http://mirror.ayous.org unstable/contrib TranslationIndex
-Get:6 http://mirror.ayous.org unstable/main TranslationIndex [2185 B]
-Get:7 http://mirror.ayous.org unstable/main Sources [6850 kB]
-Get:8 http://incoming.debian.org Release [1604 B]
+Get:3 http://mirror.ayous.org unstable/main TranslationIndex [2045 B]
+Get:4 http://mirror.ayous.org unstable/main Sources [7421 kB]
+Ign http://incoming.debian.org InRelease
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:9 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
-Get:10 http://incoming.debian.org unstable/main Sources [6850 kB]
-Get:11 http://incoming.debian.org unstable/contrib Sources [62.0 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [115 kB]
-Get:13 http://incoming.debian.org unstable/main mipsel Packages [9707 kB]
-Get:14 http://mirror.ayous.org unstable/contrib Sources [62.0 kB]
-Get:15 http://mirror.ayous.org unstable/non-free Sources [115 kB]
-Get:16 http://mirror.ayous.org unstable/main mipsel Packages [9707 kB]
-Get:17 http://incoming.debian.org unstable/contrib mipsel Packages [67.0 kB]
-Get:18 http://mirror.ayous.org unstable/contrib mipsel Packages [67.0 kB]
+Get:5 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
+Get:6 http://incoming.debian.org Release.gpg [836 B]
+Get:7 http://incoming.debian.org unstable/main Sources [7421 kB]
+Get:8 http://mirror.ayous.org unstable/contrib Sources [67.4 kB]
+Get:9 http://mirror.ayous.org unstable/non-free Sources [124 kB]
+Get:10 http://mirror.ayous.org unstable/main mipsel Packages [9966 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [67.4 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [124 kB]
+Get:13 http://incoming.debian.org unstable/main mipsel Packages [9966 kB]
+Get:14 http://mirror.ayous.org unstable/contrib mipsel Packages [68.1 kB]
Ign http://mirror.ayous.org unstable/contrib Translation-en
-Get:19 http://incoming.debian.org Sources [28.7 kB]
-Get:20 http://incoming.debian.org Packages [172 kB]
-Ign http://incoming.debian.org Translation-en
+Get:15 http://incoming.debian.org unstable/contrib mipsel Packages [68.1 kB]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [36.6 kB]
+Get:18 http://incoming.debian.org Packages [875 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
-Fetched 34.1 MB in 2min 49s (202 kB/s)
+Ign http://incoming.debian.org Translation-en
+Fetched 36.5 MB in 1min 3s (576 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -77,79 +74,30 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 1min 3s (14.6 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 3s (289 kB/s)
Download complete and in download only mode
Check arch
──────────
+** Using build dependencies supplied by package:
+Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install r-bioc-limma build dependencies (internal resolver) │
+│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
-Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.23)
-bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
-gzip: already installed (1.4-1)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-2)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-5)
-mount: already installed (2.19.1-5)
-util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-15)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+Checking for already installed source dependencies...
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
-Checking for dependency conflicts...
+Using default version 2.14.0-1
+Checking for source dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
@@ -159,15 +107,15 @@ The following extra packages will be installed:
gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
@@ -185,322 +133,331 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
libstdc++6-4.6-dev
-8 upgraded, 76 newly installed, 0 to remove and 11 not upgraded.
-Need to get 66.9 MB of archives.
-After this operation, 125 MB of additional disk space will be used.
-Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.1-6 [26.2 kB]
-Get:2 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.1-6 [134 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.1-6 [68.5 kB]
-Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.1-6 [3750 kB]
-Get:5 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.1-6 [1715 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.1-6 [6180 kB]
-Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.1-6 [4067 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.1-6 [301 kB]
-Get:9 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-3 [35.7 kB]
-Get:10 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-4 [227 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7 [134 kB]
-Get:13 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.6-1 [416 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:15 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:17 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.1-6 [231 kB]
-Get:19 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:20 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
-Get:21 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.22.2-1 [338 kB]
-Get:22 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
-Get:23 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
-Get:24 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
-Get:25 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
-Get:26 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:27 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-1 [858 kB]
-Get:28 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
-Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
-Get:30 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
-Get:31 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
-Get:32 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.6-1 [1503 kB]
-Get:33 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:34 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
-Get:35 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
-Get:36 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
-Get:37 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.28.4-2 [418 kB]
-Get:38 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-4 [112 kB]
-Get:39 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
-Get:40 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
-Get:41 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
-Get:42 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
-Get:43 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
-Get:44 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
-Get:45 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
-Get:46 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5+b1 [238 kB]
-Get:47 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5+b1 [49.9 kB]
-Get:48 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-4 [133 kB]
-Get:49 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-4 [858 kB]
-Get:50 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:51 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
-Get:52 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-4 [411 kB]
-Get:53 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-4 [2008 kB]
-Get:54 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:55 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:56 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
-Get:57 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:58 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:59 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.1-6 [4379 kB]
-Get:60 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.1-2 [1130 B]
-Get:61 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
-Get:62 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
-Get:63 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-6 [38.1 kB]
-Get:64 http://mirror.ayous.org/debian/ unstable/main libjpeg62 mipsel 6b1-2 [93.7 kB]
-Get:65 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
-Get:66 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
-Get:67 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
-Get:68 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
-Get:69 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-1 [506 kB]
-Get:70 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
-Get:71 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
-Get:72 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-4 [316 kB]
-Get:73 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
-Get:74 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
-Get:75 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-2 [270 kB]
-Get:76 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-2 [882 B]
-Get:77 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-1 [191 kB]
-Get:78 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
-Get:79 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
-Get:80 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:81 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
-Get:82 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
-Get:83 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.13.1-1 [14.6 MB]
-Get:84 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+8 upgraded, 77 newly installed, 0 to remove and 22 not upgraded.
+Need to get 71.1 MB of archives.
+After this operation, 123 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.2-3 [26.2 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.2-3 [136 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.2-3 [68.3 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.2-3 [3778 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.2-3 [1716 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.2-3 [6168 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.2-3 [4041 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.2-3 [295 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-4 [35.2 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main liblzma5 mipsel 5.1.1alpha+20110809-3 [204 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-4 [227 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.8-1 [1561 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-5 [858 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-2 [103 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7.2 [142 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.7-2 [422 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:20 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
+Get:22 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.2-3 [230 kB]
+Get:23 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:24 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
+Get:25 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.23.8-1 [363 kB]
+Get:26 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
+Get:27 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
+Get:28 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
+Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
+Get:30 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:31 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-2 [858 kB]
+Get:32 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
+Get:33 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
+Get:34 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
+Get:35 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
+Get:36 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:37 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
+Get:38 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
+Get:39 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
+Get:40 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.29.4-2 [434 kB]
+Get:41 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-4 [112 kB]
+Get:42 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
+Get:43 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
+Get:44 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-2 [191 kB]
+Get:45 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
+Get:46 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
+Get:47 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
+Get:48 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
+Get:49 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
+Get:50 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
+Get:51 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
+Get:52 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.09-2 [247 kB]
+Get:53 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.09-2 [52.0 kB]
+Get:54 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-5 [133 kB]
+Get:55 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:56 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:57 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-5 [2008 kB]
+Get:58 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:59 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:60 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:61 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:62 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.2-3 [4378 kB]
+Get:63 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.1-3 [1134 B]
+Get:64 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
+Get:65 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
+Get:66 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-7 [37.9 kB]
+Get:67 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
+Get:68 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
+Get:69 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
+Get:70 http://mirror.ayous.org/debian/ unstable/main libtinfo-dev mipsel 5.9-2 [70.2 kB]
+Get:71 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-2 [435 kB]
+Get:72 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
+Get:73 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
+Get:74 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-4 [316 kB]
+Get:75 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
+Get:76 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
+Get:77 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-7 [270 kB]
+Get:78 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-7 [888 B]
+Get:79 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
+Get:80 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
+Get:81 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:82 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
+Get:83 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
+Get:84 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.14.0-1 [18.6 MB]
+Get:85 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 66.9 MB in 13s (5012 kB/s)
-(Reading database ... 10806 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-5 (using .../libgomp1_4.6.1-6_mipsel.deb) ...
+Fetched 71.1 MB in 45s (1572 kB/s)
+(Reading database ... 10569 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-15 (using .../libgomp1_4.6.2-3_mipsel.deb) ...
Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-5 (using .../gcc-4.6-base_4.6.1-6_mipsel.deb) ...
+Preparing to replace gcc-4.6-base 4.6.1-15 (using .../gcc-4.6-base_4.6.2-3_mipsel.deb) ...
Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.1-6) ...
-(Reading database ... 10806 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-5 (using .../libgcc1_1%3a4.6.1-6_mipsel.deb) ...
+Setting up gcc-4.6-base (4.6.2-3) ...
+(Reading database ... 10570 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-15 (using .../libgcc1_1%3a4.6.2-3_mipsel.deb) ...
Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.1-6) ...
-(Reading database ... 10806 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-5 (using .../cpp-4.6_4.6.1-6_mipsel.deb) ...
+Setting up libgcc1 (1:4.6.2-3) ...
+(Reading database ... 10570 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-15 (using .../cpp-4.6_4.6.2-3_mipsel.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-5 (using .../libstdc++6-4.6-dev_4.6.1-6_mipsel.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-15 (using .../libstdc++6-4.6-dev_4.6.2-3_mipsel.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-5 (using .../g++-4.6_4.6.1-6_mipsel.deb) ...
+Preparing to replace g++-4.6 4.6.1-15 (using .../g++-4.6_4.6.2-3_mipsel.deb) ...
Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-5 (using .../gcc-4.6_4.6.1-6_mipsel.deb) ...
+Preparing to replace gcc-4.6 4.6.1-15 (using .../gcc-4.6_4.6.2-3_mipsel.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-5 (using .../libstdc++6_4.6.1-6_mipsel.deb) ...
+Preparing to replace libstdc++6 4.6.1-15 (using .../libstdc++6_4.6.2-3_mipsel.deb) ...
Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.1-6) ...
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10806 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_mipsel.deb) ...
-Selecting previously deselected package libpcre3.
+Setting up libstdc++6 (4.6.2-3) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10570 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_mipsel.deb) ...
+Selecting previously unselected package liblzma5.
+Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_mipsel.deb) ...
+Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_mipsel.deb) ...
-Selecting previously deselected package libdatrie1.
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_mipsel.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_mipsel.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_mipsel.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mipsel.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mipsel.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_mipsel.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_mipsel.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_mipsel.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mipsel.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_mipsel.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_mipsel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mipsel.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_mipsel.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_mipsel.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mipsel.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mipsel.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mipsel.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_mipsel.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_mipsel.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_mipsel.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mipsel.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mipsel.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mipsel.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mipsel.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mipsel.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_mipsel.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_mipsel.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_mipsel.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_mipsel.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_mipsel.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mipsel.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mipsel.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_mipsel.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_mipsel.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mipsel.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_mipsel.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mipsel.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mipsel.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mipsel.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_mipsel.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_mipsel.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mipsel.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_mipsel.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_mipsel.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_mipsel.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_mipsel.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_5.09-2_mipsel.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_mipsel.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mipsel.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_mipsel.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_mipsel.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_mipsel.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_mipsel.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_mipsel.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_mipsel.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mipsel.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mipsel.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_mipsel.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_mipsel.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_mipsel.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mipsel.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mipsel.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mipsel.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mipsel.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_mipsel.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_mipsel.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mipsel.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mipsel.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mipsel.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mipsel.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mipsel.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mipsel.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mipsel.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_mipsel.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_mipsel.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_mipsel.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_mipsel.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mipsel.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mipsel.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_mipsel.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libgomp1 (4.6.1-6) ...
-Setting up cpp-4.6 (4.6.1-6) ...
-Setting up gcc-4.6 (4.6.1-6) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_mipsel.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-3) ...
+Setting up cpp-4.6 (4.6.2-3) ...
+Setting up gcc-4.6 (4.6.2-3) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-6) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
@@ -510,35 +467,31 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-6) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -546,9 +499,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -556,22 +508,18 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up libstdc++6-4.6-dev (4.6.1-6) ...
-Setting up g++-4.6 (4.6.1-6) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-3) ...
+Setting up g++-4.6 (4.6.2-3) ...
Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.39-2-loongson-2e mipsel (mips64)
-Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-15 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.52.20110606-2 binutils-dev_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-15 libc-dev-bin_2.13-15 libc6_2.13-15 libc6-dev_2.13-15 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Checking correctness of source dependencies...
+Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
+Toolchain package versions: libc6-dev_2.13-21 dpkg-dev_1.16.1.1 linux-libc-dev_3.0.0-5 gcc-4.6_4.6.2-3 g++-4.6_4.6.2-3 binutils_2.21.90.20111004-2 libstdc++6-4.6-dev_4.6.2-3 libstdc++6_4.6.2-3
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-09-1 e2fsprogs_1.42~WIP-2011-10-09-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-09-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-09-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -582,12 +530,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -596,24 +544,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture mipsel
- fakeroot debian/rules clean
+ /usr/bin/fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -635,9 +578,9 @@ test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -645,10 +588,10 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
- fakeroot debian/rules binary-arch
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0'
+ /usr/bin/fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -658,43 +601,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
-installing to /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -726,58 +671,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org> >../r-bioc-limma_3.8.3-1_mipsel.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../r-bioc-limma_3.10.0-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110814-1223
+Build finished at 20111104-0545
-r-bioc-limma_3.8.3-1_mipsel.changes:
+r-bioc-limma_3.10.0-1_mipsel.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mipsel
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org>
+Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- 8f92784a8880ea765d8e8174f3d0a82bd7f2272c 1399324 r-bioc-limma_3.8.3-1_mipsel.deb
+ 627948648393c18bc0462b41103a2a9aca17e70a 1469010 r-bioc-limma_3.10.0-1_mipsel.deb
Checksums-Sha256:
- 5bc27d90999dd24ed3c422482db4f1c7dc5302af6e9b862a4000125b1af88b66 1399324 r-bioc-limma_3.8.3-1_mipsel.deb
+ a972b874ff9410f0f4afebf824de0e7212871f14652938f8814b5ef972211445 1469010 r-bioc-limma_3.10.0-1_mipsel.deb
Files:
- c79c6f2720e8d5a2013548df9e0debc7 1399324 gnu-r optional r-bioc-limma_3.8.3-1_mipsel.deb
+ a591488e1d766bdc6fb0dd7957c0f539 1469010 gnu-r optional r-bioc-limma_3.10.0-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_mipsel.deb
-───────────────────────────────
+r-bioc-limma_3.10.0-1_mipsel.deb
+────────────────────────────────
new debian package, version 2.0.
- size 1399324 bytes: control archive= 1513 bytes.
- 768 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1469010 bytes: control archive= 1539 bytes.
+ 769 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1676
- Depends: libc6 (>= 2.2), r-base-core (>= 2.13.1~)
+ Installed-Size: 1674
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -789,50 +734,51 @@ r-bioc-limma_3.8.3-1_mipsel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 687780 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 45616 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84899 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/limma.Rnw
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10704 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 3258 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 1345 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 6150 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 450060 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 2363 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 2854 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5947 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5524 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 505 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 1054 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/package.rds
-drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3743 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 173272 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 1872 2011-08-14 12:22 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 9360 2011-08-14 12:22 ./usr/lib/R/site-library/limma/INDEX
--rw-r--r-- root/root 1010 2011-08-14 12:22 ./usr/lib/R/site-library/limma/DESCRIPTION
--rwxr-xr-x root/root 1230 2011-08-14 12:22 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2117 2011-08-14 12:21 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 234 2011-08-14 12:21 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2118 2011-11-04 05:43 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 329 2011-11-04 05:43 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-11-04 05:44 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 05:44 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 971 2011-11-04 05:44 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 9458 2011-11-04 05:45 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2392 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 455737 2011-11-04 05:44 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1351 2011-11-04 05:44 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6221 2011-11-04 05:45 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3278 2011-11-04 05:44 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rwxr-xr-x root/root 1230 2011-11-04 05:44 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-11-04 05:44 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-11-04 05:44 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197381 2011-11-04 05:44 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3787 2011-11-04 05:44 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2011-11-04 05:45 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 737661 2011-11-04 05:44 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 87742 2011-11-04 05:44 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 42743 2011-11-04 05:44 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 1711 2011-11-04 05:44 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2011-11-04 05:44 ./usr/lib/R/site-library/limma/doc/index.html
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-04 05:45 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 1984 2011-11-04 05:44 ./usr/lib/R/site-library/limma/NEWS.Rd
+-rw-r--r-- root/root 1901 2011-11-04 05:44 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 518 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 1055 2011-11-04 05:44 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5603 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 216 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 6023 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 2886 2011-11-04 05:45 ./usr/lib/R/site-library/limma/Meta/links.rds
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -841,31 +787,9 @@ drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/r-bioc-limma/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-e35022f8-c753-492f-947e-8e272cf2abe5/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: mipsel
-Build-Space: 5080
-Build-Time: 129
-Distribution: sid
-Install-Time: 229
-Job: r-bioc-limma_3.8.3-1
-Package: r-bioc-limma
-Package-Time: 625
-Source-Version: 3.8.3-1
-Space: 5080
-Status: successful
-Version: 3.8.3-1
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-4f696010-c1aa-4162-8960-af4b53592dfb/build/buildd-r-bioc-limma_3.10.0-1-mipsel-S5kk14
+Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110814-1223
-Build needed 00:10:25, 5080k disc space
+Finished at 20111104-0545
+Build needed 00:07:38, 5304k disc space
diff --git a/powerpc.log b/powerpc.log
index 498c37c..14d6190 100644
--- a/powerpc.log
+++ b/powerpc.log
@@ -1,69 +1,69 @@
-From buildd at poulenc.debian.org Sun Aug 14 12:19:53 2011
-Return-path: <buildd at poulenc.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at praetorius.debian.org Fri Nov 04 05:42:01 2011
+Return-path: <buildd at praetorius.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at poulenc.debian.org>)
- id 1QsZfV-0006mv-EK
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:19:53 +0000
-Received: from poulenc.ynic.york.ac.uk ([144.32.168.77]
- helo=poulenc.debian.org)
+ (Exim 4.72) (envelope-from <buildd at praetorius.debian.org>)
+ id 1RMCXQ-0006u0-Sz
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 05:42:01 +0000
+Received: from [2001:6b0:e:2a18:214:5eff:fe97:268a]
+ (helo=praetorius.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=poulenc.debian.org, EMAIL=hostmaster at poulenc.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at poulenc.debian.org>)
- id 1QsZfT-0005jQ-WF; Sun, 14 Aug 2011 12:19:52 +0000
-Received: from buildd by poulenc.debian.org with local (Exim 4.72)
- (envelope-from <buildd at poulenc.debian.org>)
- id 1QsZfT-0001kD-Eq; Sun, 14 Aug 2011 12:19:51 +0000
-Message-Id: <E1QsZfT-0001kD-Eq at poulenc.debian.org>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 14 Aug 2011 12:19:51 +0000
-From: buildd on poulenc <buildd at poulenc.debian.org>
-To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on powerpc (dist=sid)
-Key-Id: 779E1DD6
+ CN=praetorius.debian.org,
+ EMAIL=hostmaster at praetorius.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at praetorius.debian.org>)
+ id 1RMCXP-0001LD-Ou; Fri, 04 Nov 2011 05:42:00 +0000
+Received: from buildd by praetorius.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at praetorius.debian.org>)
+ id 1RMCXO-0004De-Lx; Fri, 04 Nov 2011 05:41:58 +0000
+Date: Fri, 04 Nov 2011 05:41:58 +0000
+Message-Id: <E1RMCXO-0004De-Lx at praetorius.debian.org>
+From: buildd on praetorius <buildd at praetorius.debian.org>
+To: wouter at debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on powerpc
+ (dist=sid)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on poulenc.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on praetorius.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (powerpc) 14 Aug 2011 12:15 ║
+║ r-bioc-limma 3.10.0-1 (powerpc) 04 Nov 2011 05:38 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
+Source Version: 3.10.0-1
Architecture: powerpc
-Get:1 http://ftp.uk.debian.org unstable InRelease [146 kB]
-Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [5431 kB]
+Get:1 http://ftp.se.debian.org unstable InRelease [146 kB]
+Get:2 http://ftp.se.debian.org unstable/main Sources [5890 kB]
+Get:3 http://incoming.debian.org unstable InRelease [146 kB]
+Get:4 http://ftp.se.debian.org unstable/contrib Sources [56.9 kB]
+Get:5 http://ftp.se.debian.org unstable/non-free Sources [103 kB]
+Get:6 http://ftp.se.debian.org unstable/main powerpc Packages [7704 kB]
Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5431 kB]
-Get:6 http://ftp.uk.debian.org unstable/contrib Sources [52.5 kB]
-Get:7 http://ftp.uk.debian.org unstable/non-free Sources [95.7 kB]
-Get:8 http://ftp.uk.debian.org unstable/main powerpc Packages [7498 kB]
-Get:9 http://ftp.uk.debian.org unstable/contrib powerpc Packages [54.7 kB]
-Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.uk.debian.org unstable/main TranslationIndex [2185 B]
-Ign http://ftp.uk.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
-Get:13 http://incoming.debian.org unstable/main powerpc Packages [7498 kB]
-Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [54.7 kB]
+Get:7 http://ftp.se.debian.org unstable/contrib powerpc Packages [55.5 kB]
+Ign http://ftp.se.debian.org unstable/contrib TranslationIndex
+Get:8 http://ftp.se.debian.org unstable/main TranslationIndex [2045 B]
+Ign http://ftp.se.debian.org unstable/contrib Translation-en
+Get:9 http://incoming.debian.org Release.gpg [836 B]
+Get:10 http://incoming.debian.org unstable/main Sources [5890 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:13 http://incoming.debian.org unstable/main powerpc Packages [7704 kB]
+Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [55.5 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [25.0 kB]
-Get:18 http://incoming.debian.org Packages [110 kB]
+Get:17 http://incoming.debian.org Sources [31.6 kB]
+Get:18 http://incoming.debian.org Packages [571 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.7 MB in 22s (1213 kB/s)
+Fetched 28.5 MB in 18s (1580 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +84,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 1s (470 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 1s (564 kB/s)
Download complete and in download only mode
Check arch
@@ -102,18 +102,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -122,68 +122,65 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.4)
+base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-1)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-4)
-mount: already installed (2.19.1-4)
-util-linux: already installed (2.19.1-4)
-libc6-dev: already installed (2.13-10)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
- libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
- binutils-gold gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
+ gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -192,322 +189,291 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
- libstdc++6-4.6-dev
-8 upgraded, 76 newly installed, 0 to remove and 19 not upgraded.
-Need to get 69.6 MB of archives.
-After this operation, 121 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 powerpc 4.6.1-6 [26.3 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base powerpc 4.6.1-6 [134 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 powerpc 1:4.6.1-6 [43.1 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 powerpc 4.6.1-6 [4579 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev powerpc 4.6.1-6 [1691 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 powerpc 4.6.1-6 [6646 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 powerpc 4.6.1-6 [4966 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 powerpc 4.6.1-6 [378 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.0-3 [37.2 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 powerpc 8.12-4 [222 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.4-3 [26.5 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 powerpc 2.0.1-7 [139 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.6-1 [414 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.8.0-3 [280 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 powerpc 4.6.1-6 [281 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.7-2 [53.0 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.22.2-1 [342 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.46-3 [184 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.6-3 [16.8 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.0-3 [22.8 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 powerpc 1.7-3 [41.1 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.4.4-1 [868 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.7-3 [15.4 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.7-3 [9456 B]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.6-2 [30.7 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 powerpc 1.10.2-6.1 [937 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.28.6-1 [1611 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main libthai0 powerpc 0.1.15-2 [41.8 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main libxft2 powerpc 2.2.0-3 [57.6 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main fontconfig powerpc 2.8.0-3 [334 kB]
-Get:37 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.28.4-2 [427 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 powerpc 8.12-4 [113 kB]
-Get:39 http://ftp.uk.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.0-2 [28.6 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.0-3 [49.3 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.1-2 [16.5 kB]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.1-2 [191 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils powerpc 8.2.3 [207 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main groff-base powerpc 1.21-6 [1179 kB]
-Get:45 http://ftp.uk.debian.org/debian/ unstable/main man-db powerpc 2.6.0.2-2 [1013 kB]
-Get:46 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 powerpc 5.04-5+b1 [240 kB]
-Get:47 http://ftp.uk.debian.org/debian/ unstable/main file powerpc 5.04-5+b1 [49.9 kB]
-Get:48 http://ftp.uk.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-4 [134 kB]
-Get:49 http://ftp.uk.debian.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-4 [837 kB]
-Get:50 http://ftp.uk.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
-Get:51 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.2-1 [128 kB]
-Get:52 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-4 [422 kB]
-Get:53 http://ftp.uk.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-4 [2032 kB]
-Get:54 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:55 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:56 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
-Get:57 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:58 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:59 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.1-6 [5262 kB]
-Get:60 http://ftp.uk.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.1-2 [1134 B]
-Get:61 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf powerpc 1.2.20110419-2 [192 kB]
-Get:62 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev powerpc 1.2.20110419-2 [206 kB]
-Get:63 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.5-6 [38.5 kB]
-Get:64 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62 powerpc 6b1-2 [90.6 kB]
-Get:65 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 powerpc 8c-2 [129 kB]
-Get:66 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev powerpc 8c-2 [234 kB]
-Get:67 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf powerpc 3.3.1-1 [3956 kB]
-Get:68 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev powerpc 3.3.1-1 [4261 kB]
-Get:69 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9-1 [489 kB]
-Get:70 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu1 [21.5 kB]
-Get:71 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu1 [18.0 kB]
-Get:72 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev powerpc 8.12-4 [313 kB]
-Get:73 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
-Get:74 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.46-3 [265 kB]
-Get:75 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2-2 [258 kB]
-Get:76 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2-2 [882 B]
-Get:77 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 powerpc 3.9.5-1 [200 kB]
-Get:78 http://ftp.uk.debian.org/debian/ unstable/main zip powerpc 3.0-4 [340 kB]
-Get:79 http://ftp.uk.debian.org/debian/ unstable/main unzip powerpc 6.0-5 [188 kB]
-Get:80 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:81 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.10-1 [1627 kB]
-Get:82 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.10-1 [1166 kB]
-Get:83 http://ftp.uk.debian.org/debian/ unstable/main r-base-core powerpc 2.13.1-1 [15.0 MB]
-Get:84 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 76 newly installed, 0 to remove and 4 not upgraded.
+Need to get 55.1 MB of archives.
+After this operation, 119 MB of additional disk space will be used.
+Get:1 http://ftp.se.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.0-4 [37.2 kB]
+Get:2 http://ftp.se.debian.org/debian/ unstable/main libpcre3 powerpc 8.12-4 [222 kB]
+Get:3 http://ftp.se.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.28.8-1 [1609 kB]
+Get:4 http://ftp.se.debian.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-5 [837 kB]
+Get:5 http://ftp.se.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.2-2 [114 kB]
+Get:6 http://ftp.se.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.4-3 [26.5 kB]
+Get:7 http://ftp.se.debian.org/debian/ unstable/main libexpat1 powerpc 2.0.1-7.2 [138 kB]
+Get:8 http://ftp.se.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.7-2 [420 kB]
+Get:9 http://ftp.se.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:10 http://ftp.se.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:11 http://ftp.se.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:12 http://ftp.se.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.8.0-3 [280 kB]
+Get:13 http://ftp.se.debian.org/debian/ unstable/main libgfortran3 powerpc 4.6.2-3 [281 kB]
+Get:14 http://ftp.se.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:15 http://ftp.se.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.7-2 [53.0 kB]
+Get:16 http://ftp.se.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.23.8-1 [365 kB]
+Get:17 http://ftp.se.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.46-3 [184 kB]
+Get:18 http://ftp.se.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.6-3 [16.8 kB]
+Get:19 http://ftp.se.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.0-3 [22.8 kB]
+Get:20 http://ftp.se.debian.org/debian/ unstable/main libxcb1 powerpc 1.7-3 [41.1 kB]
+Get:21 http://ftp.se.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:22 http://ftp.se.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.4.4-2 [868 kB]
+Get:23 http://ftp.se.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.7-3 [15.4 kB]
+Get:24 http://ftp.se.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.7-3 [9456 B]
+Get:25 http://ftp.se.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.6-2 [30.7 kB]
+Get:26 http://ftp.se.debian.org/debian/ unstable/main libcairo2 powerpc 1.10.2-6.1 [937 kB]
+Get:27 http://ftp.se.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:28 http://ftp.se.debian.org/debian/ unstable/main libthai0 powerpc 0.1.15-2 [41.8 kB]
+Get:29 http://ftp.se.debian.org/debian/ unstable/main libxft2 powerpc 2.2.0-3 [57.6 kB]
+Get:30 http://ftp.se.debian.org/debian/ unstable/main fontconfig powerpc 2.8.0-3 [334 kB]
+Get:31 http://ftp.se.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.29.4-2 [447 kB]
+Get:32 http://ftp.se.debian.org/debian/ unstable/main libpcrecpp0 powerpc 8.12-4 [113 kB]
+Get:33 http://ftp.se.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.0-2 [28.6 kB]
+Get:34 http://ftp.se.debian.org/debian/ unstable/main libjpeg8 powerpc 8c-2 [129 kB]
+Get:35 http://ftp.se.debian.org/debian/ unstable/main libtiff4 powerpc 3.9.5-2 [199 kB]
+Get:36 http://ftp.se.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
+Get:37 http://ftp.se.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.0-3 [49.3 kB]
+Get:38 http://ftp.se.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.1-2 [16.5 kB]
+Get:39 http://ftp.se.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.1-2 [191 kB]
+Get:40 http://ftp.se.debian.org/debian/ unstable/main bsdmainutils powerpc 8.2.3 [207 kB]
+Get:41 http://ftp.se.debian.org/debian/ unstable/main groff-base powerpc 1.21-6 [1179 kB]
+Get:42 http://ftp.se.debian.org/debian/ unstable/main man-db powerpc 2.6.0.2-2 [1013 kB]
+Get:43 http://ftp.se.debian.org/debian/ unstable/main libmagic1 powerpc 5.09-2 [253 kB]
+Get:44 http://ftp.se.debian.org/debian/ unstable/main file powerpc 5.09-2 [52.0 kB]
+Get:45 http://ftp.se.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-5 [132 kB]
+Get:46 http://ftp.se.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:47 http://ftp.se.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
+Get:48 http://ftp.se.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-5 [2036 kB]
+Get:49 http://ftp.se.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:50 http://ftp.se.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:51 http://ftp.se.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:52 http://ftp.se.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:53 http://ftp.se.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.2-3 [5264 kB]
+Get:54 http://ftp.se.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.1-3 [1134 B]
+Get:55 http://ftp.se.debian.org/debian/ unstable/main libblas3gf powerpc 1.2.20110419-2 [192 kB]
+Get:56 http://ftp.se.debian.org/debian/ unstable/main libblas-dev powerpc 1.2.20110419-2 [206 kB]
+Get:57 http://ftp.se.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.5-7 [34.3 kB]
+Get:58 http://ftp.se.debian.org/debian/ unstable/main libjpeg8-dev powerpc 8c-2 [234 kB]
+Get:59 http://ftp.se.debian.org/debian/ unstable/main liblapack3gf powerpc 3.3.1-1 [3956 kB]
+Get:60 http://ftp.se.debian.org/debian/ unstable/main liblapack-dev powerpc 3.3.1-1 [4261 kB]
+Get:61 http://ftp.se.debian.org/debian/ unstable/main libtinfo-dev powerpc 5.9-2 [74.1 kB]
+Get:62 http://ftp.se.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9-2 [422 kB]
+Get:63 http://ftp.se.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu1 [21.5 kB]
+Get:64 http://ftp.se.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu1 [18.0 kB]
+Get:65 http://ftp.se.debian.org/debian/ unstable/main libpcre3-dev powerpc 8.12-4 [313 kB]
+Get:66 http://ftp.se.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
+Get:67 http://ftp.se.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.46-3 [265 kB]
+Get:68 http://ftp.se.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2-7 [258 kB]
+Get:69 http://ftp.se.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2-7 [892 B]
+Get:70 http://ftp.se.debian.org/debian/ unstable/main zip powerpc 3.0-4 [340 kB]
+Get:71 http://ftp.se.debian.org/debian/ unstable/main unzip powerpc 6.0-5 [188 kB]
+Get:72 http://ftp.se.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:73 http://ftp.se.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.10-1 [1627 kB]
+Get:74 http://ftp.se.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.10-1 [1166 kB]
+Get:75 http://ftp.se.debian.org/debian/ unstable/main r-base-core powerpc 2.14.0-1 [19.0 MB]
+Get:76 http://ftp.se.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 69.6 MB in 23s (2953 kB/s)
-(Reading database ... 10626 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-4 (using .../libgomp1_4.6.1-6_powerpc.deb) ...
-Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-4 (using .../gcc-4.6-base_4.6.1-6_powerpc.deb) ...
-Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.1-6) ...
-(Reading database ... 10626 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-4 (using .../libgcc1_1%3a4.6.1-6_powerpc.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.1-6) ...
-(Reading database ... 10626 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-4 (using .../cpp-4.6_4.6.1-6_powerpc.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-4 (using .../libstdc++6-4.6-dev_4.6.1-6_powerpc.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-4 (using .../g++-4.6_4.6.1-6_powerpc.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-4 (using .../gcc-4.6_4.6.1-6_powerpc.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-4 (using .../libstdc++6_4.6.1-6_powerpc.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.1-6) ...
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10628 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_powerpc.deb) ...
-Selecting previously deselected package libpcre3.
+Fetched 55.1 MB in 4s (13.1 MB/s)
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10725 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_powerpc.deb) ...
+Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_powerpc.deb) ...
-Selecting previously deselected package libdatrie1.
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_powerpc.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_powerpc.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_powerpc.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_powerpc.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_powerpc.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_powerpc.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_powerpc.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_powerpc.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_powerpc.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_powerpc.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_powerpc.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_powerpc.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_powerpc.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_powerpc.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_powerpc.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_powerpc.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_powerpc.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_powerpc.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_powerpc.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_powerpc.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_powerpc.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_powerpc.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_powerpc.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_powerpc.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_powerpc.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_powerpc.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_powerpc.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_powerpc.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_powerpc.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_powerpc.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_powerpc.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_powerpc.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_powerpc.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_powerpc.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_powerpc.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_powerpc.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_powerpc.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_powerpc.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_powerpc.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_powerpc.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_powerpc.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_powerpc.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_powerpc.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_powerpc.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_powerpc.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_powerpc.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_5.09-2_powerpc.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_powerpc.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_powerpc.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_powerpc.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_powerpc.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_powerpc.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_powerpc.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_powerpc.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_powerpc.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_powerpc.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_powerpc.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_powerpc.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_powerpc.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_powerpc.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_powerpc.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_powerpc.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_powerpc.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_powerpc.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_powerpc.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_powerpc.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_powerpc.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_powerpc.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_powerpc.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_powerpc.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_powerpc.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_powerpc.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_powerpc.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_powerpc.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_powerpc.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_powerpc.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_powerpc.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_powerpc.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_powerpc.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_powerpc.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_powerpc.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_powerpc.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_powerpc.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libgomp1 (4.6.1-6) ...
-Setting up cpp-4.6 (4.6.1-6) ...
-Setting up gcc-4.6 (4.6.1-6) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_powerpc.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-4) ...
Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-6) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
@@ -517,35 +483,31 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-6) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -553,9 +515,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -563,22 +524,20 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up libstdc++6-4.6-dev (4.6.1-6) ...
-Setting up g++-4.6 (4.6.1-6) ...
+Setting up r-base-dev (2.14.0-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-powerpc64 powerpc (ppc64)
-Toolchain package versions: binutils_2.21.52.20110707-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-10 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_2.6.39-3
-Package versions: apt_0.8.15.2 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.52.20110707-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc6_2.13-10 libc6-dev_2.13-10 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-4 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -589,12 +548,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -603,24 +562,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture powerpc
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -641,20 +595,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
+
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -665,43 +619,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/src'
-installing to /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -733,58 +689,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_powerpc.deb'.
- dpkg-genchanges -B -mpowerpc Build Daemon (poulenc) <buildd_powerpc-poulenc at buildd.debian.org> >../r-bioc-limma_3.8.3-1_powerpc.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org> >../r-bioc-limma_3.10.0-1_powerpc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110814-1219
+Build finished at 20111104-0541
-r-bioc-limma_3.8.3-1_powerpc.changes:
+r-bioc-limma_3.10.0-1_powerpc.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: powerpc
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
-Maintainer: powerpc Build Daemon (poulenc) <buildd_powerpc-poulenc at buildd.debian.org>
+Maintainer: powerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- 48fc27a5373e095097757733d32328ae4862f00f 1399766 r-bioc-limma_3.8.3-1_powerpc.deb
+ 751b45674f37e66b1090fffabef0d6af480f567a 1468918 r-bioc-limma_3.10.0-1_powerpc.deb
Checksums-Sha256:
- c65941d0db1a5fa4564dafb10e47ecc15de17a8307a2dfe7fd79090cfdb5492d 1399766 r-bioc-limma_3.8.3-1_powerpc.deb
+ f723d66b2a3cb86f4cea513f499464a81e9883023fe133581ee4a6f9d2a052ff 1468918 r-bioc-limma_3.10.0-1_powerpc.deb
Files:
- 6adfff4ba7a9eb11cc9edd7529913b8f 1399766 gnu-r optional r-bioc-limma_3.8.3-1_powerpc.deb
+ b68176b68b1dd8bf8dac41d15e5f93c1 1468918 gnu-r optional r-bioc-limma_3.10.0-1_powerpc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_powerpc.deb
-────────────────────────────────
+r-bioc-limma_3.10.0-1_powerpc.deb
+─────────────────────────────────
new debian package, version 2.0.
- size 1399766 bytes: control archive= 1514 bytes.
- 771 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1468918 bytes: control archive= 1544 bytes.
+ 772 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: powerpc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1680
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.1~)
+ Installed-Size: 1673
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -796,50 +752,51 @@ r-bioc-limma_3.8.3-1_powerpc.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2117 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 234 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-08-14 12:19 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 1011 2011-08-14 12:19 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 2363 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1350 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 3255 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 450717 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/limma.rdb
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8408 2011-08-14 12:19 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34039 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 217 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5947 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5524 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2854 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 505 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 1056 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 9360 2011-08-14 12:19 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3743 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 173277 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma.rdb
-drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 687780 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 45616 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84899 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1230 2011-08-14 12:19 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8456 2011-11-04 05:41 ./usr/lib/R/site-library/limma/libs/limma.so
+-rwxr-xr-x root/root 1230 2011-11-04 05:41 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 1984 2011-11-04 05:41 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 6023 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 216 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 1056 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5603 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 518 2011-11-04 05:41 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 9458 2011-11-04 05:41 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 1901 2011-11-04 05:41 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2392 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 3267 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 1352 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6221 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 456298 2011-11-04 05:41 ./usr/lib/R/site-library/limma/help/limma.rdb
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-04 05:41 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 87742 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 737661 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 42743 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 673 2011-11-04 05:41 ./usr/lib/R/site-library/limma/doc/index.html
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3784 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 197385 2011-11-04 05:41 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 972 2011-11-04 05:41 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 329 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2118 2011-11-04 05:41 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -853,7 +810,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-powerpc-sbuild-c56f29f2-dab8-4b8a-99b4-6e7b66ecd23d/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-aa84ebc0-2b65-457c-9015-dceb5db265eb/build/buildd-r-bioc-limma_3.10.0-1-powerpc-KgfzGb
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -861,18 +818,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: powerpc
-Build-Space: 5084
-Build-Time: 27
+Build-Space: 5304
+Build-Time: 25
Distribution: sid
-Install-Time: 163
-Job: r-bioc-limma_3.8.3-1
+Install-Time: 135
+Job: r-bioc-limma_3.10.0-1
Package: r-bioc-limma
-Package-Time: 225
-Source-Version: 3.8.3-1
-Space: 5084
+Package-Time: 195
+Source-Version: 3.10.0-1
+Space: 5304
Status: successful
-Version: 3.8.3-1
+Version: 3.10.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110814-1219
-Build needed 00:03:45, 5084k disc space
-Signature with key '779E1DD6' requested:
+Finished at 20111104-0541
+Build needed 00:03:15, 5304k disc space
+
diff --git a/s390.log b/s390.log
index 0809132..668e1c4 100644
--- a/s390.log
+++ b/s390.log
@@ -1,69 +1,69 @@
-From buildd at zandonai.debian.org Sun Aug 14 12:57:32 2011
+From buildd at zandonai.debian.org Fri Nov 04 06:37:55 2011
Return-path: <buildd at zandonai.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1QsaFv-0003VC-P6
- for logs at buildd.debian.org; Sun, 14 Aug 2011 12:57:32 +0000
+ id 1RMDPW-0007ZM-Sc
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 06:37:55 +0000
Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=zandonai.debian.org,
EMAIL=hostmaster at zandonai.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1QsaFt-0006Lj-9S; Sun, 14 Aug 2011 12:57:29 +0000
+ id 1RMDPW-0001Df-6m; Fri, 04 Nov 2011 06:37:54 +0000
Received: from buildd by zandonai.debian.org with local (Exim 4.72)
(envelope-from <buildd at zandonai.debian.org>)
- id 1QsaFs-0002ao-WD; Sun, 14 Aug 2011 12:57:29 +0000
-Message-Id: <E1QsaFs-0002ao-WD at zandonai.debian.org>
+ id 1RMDPV-0001vc-Nc; Fri, 04 Nov 2011 06:37:53 +0000
+Message-Id: <E1RMDPV-0001vc-Nc at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 14 Aug 2011 12:57:28 +0000
+Date: Fri, 4 Nov 2011 06:37:53 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on s390 (dist=sid)
-Key-Id: 2D941D26
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on s390 (dist=sid)
+Key-Id: 772711F7
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (s390) 14 Aug 2011 12:56 ║
+║ r-bioc-limma 3.10.0-1 (s390) 04 Nov 2011 06:35 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
+Source Version: 3.10.0-1
Architecture: s390
Get:1 http://ftp.de.debian.org unstable InRelease [146 kB]
-Get:2 http://ftp.de.debian.org unstable/main Sources [5431 kB]
-Get:3 http://incoming.debian.org unstable InRelease [146 kB]
+Get:2 http://incoming.debian.org unstable InRelease [146 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [5890 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5431 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [52.5 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [95.7 kB]
-Get:8 http://ftp.de.debian.org unstable/main s390 Packages [7399 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [53.7 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [5890 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [56.9 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [103 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390 Packages [7615 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [54.5 kB]
Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2185 B]
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2045 B]
Ign http://ftp.de.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
-Get:13 http://incoming.debian.org unstable/main s390 Packages [7399 kB]
-Get:14 http://incoming.debian.org unstable/contrib s390 Packages [53.7 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:13 http://incoming.debian.org unstable/main s390 Packages [7615 kB]
+Get:14 http://incoming.debian.org unstable/contrib s390 Packages [54.5 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [24.6 kB]
-Get:18 http://incoming.debian.org Packages [107 kB]
+Get:17 http://incoming.debian.org Sources [31.2 kB]
+Get:18 http://incoming.debian.org Packages [574 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.5 MB in 24s (1097 kB/s)
+Fetched 28.3 MB in 25s (1100 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +84,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 2s (455 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 2s (387 kB/s)
Download complete and in download only mode
Check arch
@@ -102,18 +102,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 42 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 42 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -125,62 +125,65 @@ Checking for already installed dependencies...
base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.3)
diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+dpkg: already installed (1.16.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-05-2)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-2)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-5)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
sysvinit-utils: already installed (2.88dsf-13.11)
sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
+tar: already installed (1.26-2)
bsdutils: already installed (1:2.19.1-5)
mount: already installed (2.19.1-5)
util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-15)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6
+ libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
+ libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -189,286 +192,336 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 9 not upgraded.
-Need to get 46.3 MB of archives.
-After this operation, 118 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.0-3 [39.0 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-4 [228 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.4-3 [28.5 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.0.1-7 [137 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.6-1 [432 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-3 [286 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390 4.6.1-6 [297 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.7-2 [57.1 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.22.2-1 [353 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.46-3 [191 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.6-3 [17.0 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-3 [23.7 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.7-3 [48.4 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.4-1 [892 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.7-3 [17.0 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.7-3 [9680 B]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-2 [31.2 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.10.2-6.1 [956 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.6-1 [1639 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.15-2 [44.0 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-3 [60.3 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-3 [335 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.28.4-2 [447 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 8.12-4 [114 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.0-2 [30.3 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-3 [52.3 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-2 [16.8 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-2 [206 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.3 [209 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-6 [1156 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.0.2-2 [1029 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.04-5+b1 [243 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main file s390 5.04-5+b1 [50.1 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-4 [143 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-4 [879 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-4 [431 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-4 [2073 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.1-6 [4513 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.1-2 [1126 B]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2.20110419-2 [191 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2.20110419-2 [203 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.5-6 [36.9 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main libjpeg62 s390 6b1-2 [96.1 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390 8c-2 [139 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390 8c-2 [241 kB]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.1-1 [1720 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.1-1 [1920 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9-1 [504 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu1 [21.9 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu1 [18.4 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 8.12-4 [308 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.46-3 [268 kB]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-2 [257 kB]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-2 [878 B]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.5-1 [206 kB]
-Get:70 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-4 [347 kB]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-5 [195 kB]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.10-1 [1651 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.10-1 [1198 kB]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.13.1-1 [15.0 MB]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libreadline6
+ libstdc++6 libstdc++6-4.6-dev
+9 upgraded, 77 newly installed, 0 to remove and 33 not upgraded.
+Need to get 66.8 MB of archives.
+After this operation, 115 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libreadline6 s390 6.2-7 [174 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.0-4 [38.9 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main liblzma5 s390 5.1.1alpha+20110809-3 [208 kB]
+Get:4 http://incoming.debian.org/buildd-unstable/ libgomp1 4.6.2-4 [30.4 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-4 [228 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.8-1 [1681 kB]
+Get:7 http://incoming.debian.org/buildd-unstable/ gcc-4.6-base 4.6.2-4 [137 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-5 [879 kB]
+Get:9 http://incoming.debian.org/buildd-unstable/ libgcc1 1:4.6.2-4 [31.2 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-2 [122 kB]
+Get:11 http://incoming.debian.org/buildd-unstable/ cpp-4.6 4.6.2-4 [3851 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.4-3 [28.5 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.0.1-7.2 [137 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.7-2 [436 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-3 [286 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.7-2 [57.1 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.23.8-1 [378 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.46-3 [191 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.6-3 [17.0 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-3 [23.7 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.7-3 [48.4 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.4-2 [892 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.7-3 [17.0 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.7-3 [9680 B]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-2 [31.2 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.10.2-6.1 [956 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.15-2 [44.0 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-3 [60.3 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-3 [335 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.29.4-2 [465 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 8.12-4 [114 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.0-2 [30.3 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390 8c-2 [139 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.5-2 [209 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-5 [433 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-3 [52.3 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-2 [16.8 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-2 [206 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.3 [209 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-6 [1156 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.0.2-2 [1029 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.09-2 [257 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main file s390 5.09-2 [52.6 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-5 [143 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-5 [2073 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.1-3 [1128 B]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2.20110419-2 [191 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2.20110419-2 [203 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.5-7 [35.9 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390 8c-2 [241 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.1-1 [1720 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.1-1 [1920 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390 5.9-2 [83.3 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9-2 [426 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu1 [21.9 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu1 [18.4 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 8.12-4 [308 kB]
+Get:70 http://incoming.debian.org/buildd-unstable/ libstdc++6-4.6-dev 4.6.2-4 [1675 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.46-3 [268 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-7 [258 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-7 [886 B]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-4 [347 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-5 [195 kB]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.10-1 [1651 kB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.10-1 [1198 kB]
+Get:80 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.14.0-1 [19.1 MB]
+Get:81 http://incoming.debian.org/buildd-unstable/ g++-4.6 4.6.2-4 [5875 kB]
+Get:82 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+Get:83 http://incoming.debian.org/buildd-unstable/ gcc-4.6 4.6.2-4 [4159 kB]
+Get:84 http://incoming.debian.org/buildd-unstable/ libstdc++6 4.6.2-4 [361 kB]
+Get:85 http://incoming.debian.org/buildd-unstable/ libgfortran3 4.6.2-4 [296 kB]
+Get:86 http://incoming.debian.org/buildd-unstable/ gfortran-4.6 4.6.2-4 [4515 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 46.3 MB in 12s (3707 kB/s)
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10583 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_s390.deb) ...
-Selecting previously deselected package libpcre3.
+Fetched 66.8 MB in 37s (1774 kB/s)
+(Reading database ... 10631 files and directories currently installed.)
+Preparing to replace libreadline6 6.2-6 (using .../libreadline6_6.2-7_s390.deb) ...
+Unpacking replacement libreadline6 ...
+Setting up libreadline6 (6.2-7) ...
+(Reading database ... 10631 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-13 (using .../libgomp1_4.6.2-4_s390.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.1-13 (using .../gcc-4.6-base_4.6.2-4_s390.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.2-4) ...
+(Reading database ... 10632 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-13 (using .../libgcc1_1%3a4.6.2-4_s390.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.2-4) ...
+(Reading database ... 10632 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-13 (using .../cpp-4.6_4.6.2-4_s390.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-13 (using .../libstdc++6-4.6-dev_4.6.2-4_s390.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.1-13 (using .../g++-4.6_4.6.2-4_s390.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.1-13 (using .../gcc-4.6_4.6.2-4_s390.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.1-13 (using .../libstdc++6_4.6.2-4_s390.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.2-4) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10632 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_s390.deb) ...
+Selecting previously unselected package liblzma5.
+Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_s390.deb) ...
+Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_s390.deb) ...
-Selecting previously deselected package libdatrie1.
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_s390.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_s390.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_s390.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_s390.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_s390.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_s390.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_s390.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_s390.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_s390.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_s390.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-4_s390.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_s390.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_s390.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_s390.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_s390.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_s390.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_s390.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_s390.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_s390.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_s390.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_s390.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_s390.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_s390.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_s390.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_s390.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_s390.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_s390.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_s390.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_s390.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_s390.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_s390.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_s390.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_s390.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_s390.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_s390.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_s390.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_s390.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_s390.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_s390.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_s390.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_s390.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_s390.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_s390.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_s390.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_s390.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_s390.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_s390.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_s390.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_s390.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_s390.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_s390.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_s390.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_s390.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_s390.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-4_s390.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_s390.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_s390.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_s390.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_s390.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_s390.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_s390.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_s390.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_s390.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_s390.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_s390.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_s390.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_s390.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_s390.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_s390.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_s390.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_s390.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_s390.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_s390.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_s390.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_s390.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_s390.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_s390.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_s390.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_s390.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_s390.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_s390.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_s390.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_s390.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_s390.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-4) ...
+Setting up cpp-4.6 (4.6.2-4) ...
+Setting up gcc-4.6 (4.6.2-4) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-6) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-4) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
@@ -478,35 +531,31 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-6) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-4) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -514,9 +563,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -524,20 +572,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-4) ...
+Setting up g++-4.6 (4.6.2-4) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390 (s390x)
-Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-15 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-15 libc-dev-bin_2.13-15 libc6_2.13-15 libc6-dev_2.13-15 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111004-1 dpkg-dev_1.16.1 g++-4.6_4.6.2-4 gcc-4.6_4.6.2-4 libc6-dev_2.13-21 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.8 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-4 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.3 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1 dpkg-dev_1.16.1 e2fslibs_1.42~WIP-2011-10-05-2 e2fsprogs_1.42~WIP-2011-10-05-2 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-4 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-4 gcc-4.6-base_4.6.2-4 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-05-2 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-4 libgdbm3_1.8.3-10 libgfortran3_4.6.2-4 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-4 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.1.0-1 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-05-2 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-5 perl-base_5.12.4-5 perl-modules_5.12.4-5 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-6 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011k-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -548,12 +598,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -562,14 +612,14 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS =
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS = -Wl,-z,relro
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture s390
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -577,9 +627,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -600,20 +650,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -624,43 +674,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/src'
-installing to /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -692,22 +744,22 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_s390.deb'.
- dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.8.3-1_s390.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_s390.deb'.
+ dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.10.0-1_s390.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110814-1257
+Build finished at 20111104-0637
-r-bioc-limma_3.8.3-1_s390.changes:
+r-bioc-limma_3.10.0-1_s390.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: s390
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
Maintainer: s390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
@@ -715,35 +767,35 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- 7a5940b6fce443a15b82df085c16ce062abb1053 1400118 r-bioc-limma_3.8.3-1_s390.deb
+ c434ba8176e35a50525c12c238cfba7a9295288f 1470862 r-bioc-limma_3.10.0-1_s390.deb
Checksums-Sha256:
- 04d51999f93483ed293deab99138905d9242a2c7dfb5bf0e73a43e51f25f9cb1 1400118 r-bioc-limma_3.8.3-1_s390.deb
+ a777c2b4de877c5ccd35f5bed7a56d733c185b87b61422ef5d2e8293c8636987 1470862 r-bioc-limma_3.10.0-1_s390.deb
Files:
- df67e9b0a7b42242c6ab5e21548c15e8 1400118 gnu-r optional r-bioc-limma_3.8.3-1_s390.deb
+ 3ce54d4a288faac2527fa28926d5925f 1470862 gnu-r optional r-bioc-limma_3.10.0-1_s390.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_s390.deb
-─────────────────────────────
+r-bioc-limma_3.10.0-1_s390.deb
+──────────────────────────────
new debian package, version 2.0.
- size 1400118 bytes: control archive= 1513 bytes.
- 768 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1470862 bytes: control archive= 1538 bytes.
+ 769 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: s390
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1676
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.1~)
+ Installed-Size: 1672
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -755,50 +807,51 @@ r-bioc-limma_3.8.3-1_s390.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9360 2011-08-14 12:57 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-08-14 12:57 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 173274 2011-08-14 12:57 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3749 2011-08-14 12:57 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-08-14 12:57 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34039 2011-08-14 12:57 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8492 2011-08-14 12:57 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1336 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 450025 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3258 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2363 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6150 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1872 2011-08-14 12:57 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 1711 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 687780 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 45616 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84899 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 1004 2011-08-14 12:57 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 505 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 217 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5524 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2854 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 1051 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5947 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rwxr-xr-x root/root 1230 2011-08-14 12:57 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 234 2011-08-14 12:57 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2117 2011-08-14 12:57 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9458 2011-11-04 06:37 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-11-04 06:37 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197384 2011-11-04 06:37 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3783 2011-11-04 06:37 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-11-04 06:37 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2011-11-04 06:37 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8492 2011-11-04 06:37 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1350 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 455717 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3266 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2392 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6221 2011-11-04 06:37 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1901 2011-11-04 06:37 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 737661 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 42743 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 87742 2011-11-04 06:37 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 965 2011-11-04 06:37 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 1984 2011-11-04 06:37 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 518 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 216 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5603 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1051 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6023 2011-11-04 06:37 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rwxr-xr-x root/root 1230 2011-11-04 06:37 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 06:37 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 329 2011-11-04 06:37 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2118 2011-11-04 06:37 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -812,7 +865,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390-sbuild-0a0390c0-7418-4d13-bb7a-32471449ec27/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2
+Purging /var/lib/schroot/mount/sid-s390-sbuild-cdf11178-0f25-4df5-a99f-c524e7e2fa74/build/buildd-r-bioc-limma_3.10.0-1-s390-26GRcJ
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -820,18 +873,845 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390
-Build-Space: 5080
+Build-Space: 5308
+Build-Time: 15
+Distribution: sid
+Install-Time: 63
+Job: r-bioc-limma_3.10.0-1
+Package: r-bioc-limma
+Package-Time: 119
+Source-Version: 3.10.0-1
+Space: 5308
+Status: successful
+Version: 3.10.0-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20111104-0637
+Build needed 00:01:59, 5308k disc space
+Signature with key '772711F7' requested:
+From buildd at zandonai.debian.org Sun Dec 04 15:01:31 2011
+Return-path: <buildd at zandonai.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1RXDZL-0007Ea-8q
+ for logs at buildd.debian.org; Sun, 04 Dec 2011 15:01:31 +0000
+Received: from zandonai.debian.org ([80.245.147.46])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=zandonai.debian.org,
+ EMAIL=hostmaster at zandonai.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1RXDZK-0006WG-HT; Sun, 04 Dec 2011 15:01:30 +0000
+Received: from buildd by zandonai.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at zandonai.debian.org>)
+ id 1RXDZK-0000aw-0u; Sun, 04 Dec 2011 15:01:30 +0000
+Message-Id: <E1RXDZK-0000aw-0u at zandonai.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Sun, 4 Dec 2011 15:01:29 +0000
+From: buildd on zandonai <buildd at zandonai.debian.org>
+To: aurelien at aurel32.net,phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on s390x (dist=sid)
+Key-Id: 96C8554F
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.10.0-1 (s390x) 04 Dec 2011 15:00 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.10.0-1
+Source Version: 3.10.0-1
+Architecture: s390x
+Get:1 http://ftp.de.debian.org unstable InRelease [188 kB]
+Get:2 http://incoming.debian.org unstable InRelease [188 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [5936 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [5928 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [56.3 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [103 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390x Packages [6401 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390x Packages [38.8 kB]
+Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2045 B]
+Ign http://ftp.de.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [56.4 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:13 http://incoming.debian.org unstable/main s390x Packages [6439 kB]
+Get:14 http://incoming.debian.org unstable/contrib s390x Packages [38.9 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
+Get:16 http://incoming.debian.org Release [1616 B]
+Get:17 http://incoming.debian.org Sources [49.2 kB]
+Get:18 http://incoming.debian.org Packages [891 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 26.4 MB in 24s (1068 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-limma.git
+Need to get 974 kB of source archives.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 0s (2568 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5+b1)
+fakeroot: already installed (1.18.2-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+libc6-dev: already installed (2.13-21+b1)
+gcc: already installed (4:4.6.2-1 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-1 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1+b1)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.9.11
+cdbs: missing
+r-base-dev: missing
+Using default version 2.14.0-1
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils bzip2 dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-1.0 libbz2-dev libcairo2 libcroco3 libdatrie1
+ libexpat1 libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0
+ libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation bzip2-doc devscripts dh-make curl defoma
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ bzip2 libbz2-1.0
+2 upgraded, 77 newly installed, 0 to remove and 2 not upgraded.
+Need to get 56.2 MB of archives.
+After this operation, 125 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.0-5+b1 [39.8 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 8.12-4+b1 [235 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.30.2-4 [1866 kB]
+Get:5 http://incoming.debian.org/debian/ unstable/main bzip2 s390x 1.0.6-1 [51.1 kB]
+Get:6 http://incoming.debian.org/debian/ unstable/main libbz2-1.0 s390x 1.0.6-1 [52.7 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-5+b1 [891 kB]
+Get:8 http://incoming.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-1 [38.8 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.2-2+b1 [123 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.5-2 [29.6 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.0.1-7.2 [141 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.8-1 [456 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.8.0-3 [286 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.6.2-5+b1 [350 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.7-2+b1 [59.2 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.24.0-1 [346 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.46-3 [192 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.6-4 [17.0 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.0-4 [23.5 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.7-4+b1 [48.6 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.4.4-4 [907 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.7-4+b1 [17.4 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.7-4+b1 [9930 B]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.6-2 [32.9 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.10.2-6.1 [949 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.16-2 [203 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.16-2 [45.8 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.2.0-3 [61.0 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.8.0-3 [336 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.29.4-2 [468 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 8.12-4+b1 [114 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.0-2 [30.3 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8c-2 [189 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390x 3.9.5-2 [210 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.0-3 [53.8 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.1-2 [16.9 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.1-2 [213 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 8.2.3 [213 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.21-6+b1 [1184 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.0.2-3+b1 [1029 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 5.09-2+b1 [252 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main file s390x 5.09-2+b1 [52.9 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-5+b1 [157 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.100 [77.1 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-5+b1 [2163 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.9.11 [552 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.2-5+b1 [4781 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.2-1 [1130 B]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390x 1.2.20110419-2 [221 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-2 [230 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8c-2 [295 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390x 3.3.1-1 [4037 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.3.1-1 [4296 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9-4+b1 [121 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9-4+b1 [413 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu1 [21.9 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu1 [18.3 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 8.12-4+b1 [318 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.3.4.dfsg-3+b1 [199 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.46-3 [272 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2-8+b1 [272 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2-8+b1 [898 B]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-4 [349 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-5 [202 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-3 [70.8 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.10-1 [1652 kB]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.10-1 [1221 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 2.14.0-1 [19.2 MB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 56.2 MB in 15s (3720 kB/s)
+(Reading database ... 10722 files and directories currently installed.)
+Preparing to replace bzip2 1.0.5-7+b1 (using .../bzip2_1.0.6-1_s390x.deb) ...
+Unpacking replacement bzip2 ...
+Preparing to replace libbz2-1.0 1.0.5-7+b1 (using .../libbz2-1.0_1.0.6-1_s390x.deb) ...
+Unpacking replacement libbz2-1.0 ...
+Setting up libbz2-1.0 (1.0.6-1) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10722 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5+b1_s390x.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4+b1_s390x.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_s390x.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5+b1_s390x.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2+b1_s390x.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-2_s390x.deb) ...
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_s390x.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_s390x.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously unselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_s390x.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-5+b1_s390x.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2+b1_s390x.deb) ...
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.0-1_s390x.deb) ...
+Selecting previously unselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_s390x.deb) ...
+Selecting previously unselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_s390x.deb) ...
+Selecting previously unselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_s390x.deb) ...
+Selecting previously unselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-4+b1_s390x.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_s390x.deb) ...
+Selecting previously unselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-4+b1_s390x.deb) ...
+Selecting previously unselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-4+b1_s390x.deb) ...
+Selecting previously unselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_s390x.deb) ...
+Selecting previously unselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_s390x.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.16-2_all.deb) ...
+Selecting previously unselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.16-2_s390x.deb) ...
+Selecting previously unselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_s390x.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_s390x.deb) ...
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_s390x.deb) ...
+Selecting previously unselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4+b1_s390x.deb) ...
+Selecting previously unselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_s390x.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_s390x.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_s390x.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
+Selecting previously unselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_s390x.deb) ...
+Selecting previously unselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_s390x.deb) ...
+Selecting previously unselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_s390x.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_s390x.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6+b1_s390x.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-3+b1_s390x.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2+b1_s390x.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_5.09-2+b1_s390x.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+b1_s390x.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.100_all.deb) ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5+b1_s390x.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.11_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-5+b1_s390x.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-1_s390x.deb) ...
+Selecting previously unselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_s390x.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_s390x.deb) ...
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_s390x.deb) ...
+Selecting previously unselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_s390x.deb) ...
+Selecting previously unselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_s390x.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_s390x.deb) ...
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4+b1_s390x.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4+b1_s390x.deb) ...
+Selecting previously unselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_s390x.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_s390x.deb) ...
+Selecting previously unselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4+b1_s390x.deb) ...
+Selecting previously unselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3+b1_s390x.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_s390x.deb) ...
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8+b1_s390x.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8+b1_s390x.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-4_s390x.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-5_s390x.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-3_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_s390x.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_s390x.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_s390x.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up bzip2 (1.0.6-1) ...
+Setting up libpipeline1 (1.2.0-5+b1) ...
+Setting up libpcre3 (8.12-4+b1) ...
+Setting up libffi5 (3.0.10-3+b1) ...
+Setting up libglib2.0-0 (2.30.2-4) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5+b1) ...
+Setting up libcroco3 (0.6.2-2+b1) ...
+Setting up libdatrie1 (0.2.5-2) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.8-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-2) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.2-5+b1) ...
+Setting up x11-common (1:7.6+9) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2+b1) ...
+Setting up libpixman-1-0 (0.24.0-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.7-4+b1) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.7-4+b1) ...
+Setting up libxcb-shm0 (1.7-4+b1) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libthai-data (0.1.16-2) ...
+Setting up libthai0 (0.1.16-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4+b1) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5+b1) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-6+b1) ...
+Setting up man-db (2.6.0.2-3+b1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.09-2+b1) ...
+Setting up file (5.09-2+b1) ...
+Setting up gettext-base (0.18.1.1-5+b1) ...
+Setting up cdbs (0.4.100) ...
+Setting up html2text (1.3.2a-15+b1) ...
+Setting up gettext (0.18.1.1-5+b1) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.9.11) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-5+b1) ...
+Setting up gfortran (4:4.6.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2.20110419-2) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2.20110419-2) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.1-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libtinfo-dev (5.9-4+b1) ...
+Setting up libncurses5-dev (5.9-4+b1) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcre3-dev (8.12-4+b1) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3+b1) ...
+Setting up libpng12-dev (1.2.46-3) ...
+Setting up libreadline6-dev (6.2-8+b1) ...
+Setting up libreadline-dev (6.2-8+b1) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
+Setting up xdg-utils (1.1.0~rc1-3) ...
+Setting up tcl8.5 (8.5.10-1) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.10-1) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.14.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.14.0-1) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-s390x s390x (s390x)
+Toolchain package versions: binutils_2.22-1+b1 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-5+b1 gcc-4.6_4.6.2-5+b1 libc6-dev_2.13-21+b1 libstdc++6_4.6.2-5+b1 libstdc++6-4.6-dev_4.6.2-5+b1 linux-libc-dev_3.1.4-1
+Package versions: apt_0.8.15.9+b1 base-files_6.5+b1 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-1+b1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.100 coreutils_8.13-3+b1 cpp_4:4.6.2-1 cpp-4.6_4.6.2-5+b1 dash_0.5.7-2+b1 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1+b1 debhelper_8.9.11 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1+b1 dpatch_2.0.33 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.2-1 g++-4.6_4.6.2-5+b1 gcc_4:4.6.2-1 gcc-4.6_4.6.2-5+b1 gcc-4.6-base_4.6.2-5+b1 gettext_0.18.1.1-5+b1 gettext-base_0.18.1.1-5+b1 gfortran_4:4.6.2-1 gfortran-4.6_4.6.2-5+b1 gnupg_1.4.11-3+b1 gpgv_1.4.11-3+b1 grep_2.9-2+b1 groff-base_1.21-6+b1 gzip_1.4-2+b1 hostname_3.06+b1 html2text_1.3.2a-15+b1 initscripts_2.88dsf-13.13+b1 insserv_1.14.0-2.1+b1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-4+b1 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-21+b1 libc-dev-bin_2.13-21+b1 libc6_2.13-21+b1 libc6-dev_2.13-21+b1 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2+b1 libdatrie1_0.2.5-2 libdb5.1_5.1.25-11+b1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3+b1 libfontconfig1_2.8.0-3 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.6.2-5+b1 libgdbm3_1.8.3-10+b1 libgfortran3_4.6.2-5+b1 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2+b1 libgomp1_4.6.2-5+b1 libice6_2:1.0.7-2+b1 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.09-2+b1 libmount1_2.19.1-5 libmpc2_0.9-4+b1 libmpfr4_3.1.0-3+b1 libncurses5_5.9-4+b1 libncurses5-dev_5.9-4+b1 libpam-modules_1.1.3-6+b1 libpam-modules-bin_1.1.3-6+b1 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6+b1 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4+b1 libpcre3-dev_8.12-4+b1 libpcrecpp0_8.12-4+b1 libpipeline1_1.2.0-5+b1 libpixman-1-0_0.24.0-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-8+b1 libreadline6_6.2-8+b1 libreadline6-dev_6.2-8+b1 libselinux1_2.1.0-4+b1 libsepol1_2.1.0-1.1+b1 libslang2_2.2.4-5 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.2-5+b1 libstdc++6-4.6-dev_4.6.2-5+b1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.16-2 libthai0_0.1.16-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4+b1 libtinfo5_5.9-4+b1 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-19+b1 libuuid1_2.19.1-5 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.7-4+b1 libxcb-shm0_1.7-4+b1 libxcb1_1.7-4+b1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5+b1 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.1.4-1 login_1:4.1.4.2+svn3283-3+b1 lsb-base_3.2-28 make_3.81-8.1+b1 man-db_2.6.0.2-3+b1 mawk_1.3.3-16+b1 mount_2.19.1-5 multiarch-support_2.13-21+b1 ncurses-base_5.9-4 ncurses-bin_5.9-4+b1 passwd_1:4.1.4.2+svn3283-3+b1 patch_2.6.1-2+b1 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p1-2+b1 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13+b1 sysvinit-utils_2.88dsf-13.13+b1 tar_1.26-3+b1 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-3 xz-utils_5.1.1alpha+20110809-3+b1 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3+b1 zlib1g-dev_1:1.2.3.4.dfsg-3+b1
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: host architecture s390x
+ fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+ fakeroot debian/rules binary-arch
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.10.0-1_s390x.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.10.0
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20111204-1501
+
+r-bioc-limma_3.10.0-1_s390x.changes:
+Format: 1.8
+Date: Fri, 04 Nov 2011 13:35:49 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: s390x
+Version: 3.10.0-1
+Distribution: sid
+Urgency: low
+Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Changes:
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
+ .
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+Checksums-Sha1:
+ 1267767968d03f7cd721190a1cebd33ca2c31c8d 1471634 r-bioc-limma_3.10.0-1_s390x.deb
+Checksums-Sha256:
+ a3402e9cfc25d0b9d56abdd994ab919246c6c815e8dc0415abc55b9e6ee66caa 1471634 r-bioc-limma_3.10.0-1_s390x.deb
+Files:
+ 7db57adebddca21f0df35673f40f1437 1471634 gnu-r optional r-bioc-limma_3.10.0-1_s390x.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.10.0-1_s390x.deb
+───────────────────────────────
+
+ new debian package, version 2.0.
+ size 1471634 bytes: control archive= 1535 bytes.
+ 769 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.10.0-1
+ Architecture: s390x
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1675
+ Depends: libc6 (>= 2.13), r-base-core (>= 2.14.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9458 2011-12-04 15:01 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197384 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3783 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10632 2011-12-04 15:01 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1353 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 456033 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3277 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2392 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6221 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1901 2011-12-04 15:01 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 737661 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 42743 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 87742 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 966 2011-12-04 15:01 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 1984 2011-12-04 15:01 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 518 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 216 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5603 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1055 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6023 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rwxr-xr-x root/root 1230 2011-12-04 15:01 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 329 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2118 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/copyright
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-s390x-sbuild-8ea54fc1-535e-404d-acfd-f1f876076319/sid-s390x-sbuild/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: s390x
+Build-Space: 5308
Build-Time: 14
Distribution: sid
-Install-Time: 30
-Job: r-bioc-limma_3.8.3-1
+Install-Time: 31
+Job: r-bioc-limma_3.10.0-1
Package: r-bioc-limma
-Package-Time: 81
-Source-Version: 3.8.3-1
-Space: 5080
+Package-Time: 83
+Source-Version: 3.10.0-1
+Space: 5308
Status: successful
-Version: 3.8.3-1
+Version: 3.10.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110814-1257
-Build needed 00:01:21, 5080k disc space
-Signature with key '2D941D26' requested:
+Finished at 20111204-1501
+Build needed 00:01:23, 5308k disc space
+Signature with key '96C8554F' requested:
diff --git a/s390x.log b/s390x.log
new file mode 100644
index 0000000..923963d
--- /dev/null
+++ b/s390x.log
@@ -0,0 +1,827 @@
+From buildd at zandonai.debian.org Sun Dec 04 15:01:31 2011
+Return-path: <buildd at zandonai.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1RXDZL-0007Ea-8q
+ for logs at buildd.debian.org; Sun, 04 Dec 2011 15:01:31 +0000
+Received: from zandonai.debian.org ([80.245.147.46])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=zandonai.debian.org,
+ EMAIL=hostmaster at zandonai.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1RXDZK-0006WG-HT; Sun, 04 Dec 2011 15:01:30 +0000
+Received: from buildd by zandonai.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at zandonai.debian.org>)
+ id 1RXDZK-0000aw-0u; Sun, 04 Dec 2011 15:01:30 +0000
+Message-Id: <E1RXDZK-0000aw-0u at zandonai.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Sun, 4 Dec 2011 15:01:29 +0000
+From: buildd on zandonai <buildd at zandonai.debian.org>
+To: aurelien at aurel32.net,phil+buildd at philkern.de,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on s390x (dist=sid)
+Key-Id: 96C8554F
+Delivered-To: logs at buildd.debian.org
+
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
+
+╔══════════════════════════════════════════════════════════════════════════════╗
+║ r-bioc-limma 3.10.0-1 (s390x) 04 Dec 2011 15:00 ║
+╚══════════════════════════════════════════════════════════════════════════════╝
+
+Package: r-bioc-limma
+Version: 3.10.0-1
+Source Version: 3.10.0-1
+Architecture: s390x
+Get:1 http://ftp.de.debian.org unstable InRelease [188 kB]
+Get:2 http://incoming.debian.org unstable InRelease [188 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [5936 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [5928 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [56.3 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [103 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390x Packages [6401 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390x Packages [38.8 kB]
+Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2045 B]
+Ign http://ftp.de.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [56.4 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:13 http://incoming.debian.org unstable/main s390x Packages [6439 kB]
+Get:14 http://incoming.debian.org unstable/contrib s390x Packages [38.9 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
+Get:16 http://incoming.debian.org Release [1616 B]
+Get:17 http://incoming.debian.org Sources [49.2 kB]
+Get:18 http://incoming.debian.org Packages [891 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 26.4 MB in 24s (1068 kB/s)
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Fetch source files │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Check APT
+─────────
+
+Checking available source versions...
+
+Download source files with APT
+──────────────────────────────
+
+Reading package lists...
+Building dependency tree...
+Reading state information...
+NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/r-bioc-limma.git
+Need to get 974 kB of source archives.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 0s (2568 kB/s)
+Download complete and in download only mode
+
+Check arch
+──────────
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5+b1)
+fakeroot: already installed (1.18.2-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Checking for already installed dependencies...
+libc6-dev: already installed (2.13-21+b1)
+gcc: already installed (4:4.6.2-1 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.2-1 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1+b1)
+dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.9.11
+cdbs: missing
+r-base-dev: missing
+Using default version 2.14.0-1
+Checking for dependency conflicts...
+Installing positive dependencies: debhelper cdbs r-base-dev
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following extra packages will be installed:
+ bsdmainutils bzip2 dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-1.0 libbz2-dev libcairo2 libcroco3 libdatrie1
+ libexpat1 libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0
+ libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1
+ libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
+ libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+Suggested packages:
+ wamerican wordlist whois vacation bzip2-doc devscripts dh-make curl defoma
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html tclreadline gvfs-bin
+Recommended packages:
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
+The following NEW packages will be installed:
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ bzip2 libbz2-1.0
+2 upgraded, 77 newly installed, 0 to remove and 2 not upgraded.
+Need to get 56.2 MB of archives.
+After this operation, 125 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.0-5+b1 [39.8 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 8.12-4+b1 [235 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.30.2-4 [1866 kB]
+Get:5 http://incoming.debian.org/debian/ unstable/main bzip2 s390x 1.0.6-1 [51.1 kB]
+Get:6 http://incoming.debian.org/debian/ unstable/main libbz2-1.0 s390x 1.0.6-1 [52.7 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-5+b1 [891 kB]
+Get:8 http://incoming.debian.org/debian/ unstable/main libbz2-dev s390x 1.0.6-1 [38.8 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.2-2+b1 [123 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390x 0.2.5-2 [29.6 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.0.1-7.2 [141 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390x 2.4.8-1 [456 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390x 2.8.0-3 [286 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390x 4.6.2-5+b1 [350 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main libice6 s390x 2:1.0.7-2+b1 [59.2 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390x 0.24.0-1 [346 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390x 1.2.46-3 [192 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390x 1:1.0.6-4 [17.0 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390x 1:1.1.0-4 [23.5 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390x 1.7-4+b1 [48.6 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390x 2:1.4.4-4 [907 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390x 1.7-4+b1 [17.4 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390x 1.7-4+b1 [9930 B]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390x 1:0.9.6-2 [32.9 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390x 1.10.2-6.1 [949 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.16-2 [203 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390x 0.1.16-2 [45.8 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390x 2.2.0-3 [61.0 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390x 2.8.0-3 [336 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390x 1.29.4-2 [468 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390x 8.12-4+b1 [114 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390x 2:1.2.0-2 [30.3 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390x 8c-2 [189 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390x 3.9.5-2 [210 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390x 2:1.3.0-3 [53.8 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390x 1:1.2.1-2 [16.9 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390x 1:1.1.1-2 [213 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 8.2.3 [213 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.21-6+b1 [1184 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.0.2-3+b1 [1029 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 5.09-2+b1 [252 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main file s390x 5.09-2+b1 [52.9 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-5+b1 [157 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.100 [77.1 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-5+b1 [2163 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.9.11 [552 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390x 4.6.2-5+b1 [4781 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main gfortran s390x 4:4.6.2-1 [1130 B]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390x 1.2.20110419-2 [221 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390x 1.2.20110419-2 [230 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390x 8c-2 [295 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390x 3.3.1-1 [4037 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390x 3.3.1-1 [4296 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390x 5.9-4+b1 [121 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390x 5.9-4+b1 [413 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390x 1.1.24+nmu1 [21.9 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390x 1.1.24+nmu1 [18.3 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390x 8.12-4+b1 [318 kB]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.3.4.dfsg-3+b1 [199 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390x 1.2.46-3 [272 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390x 6.2-8+b1 [272 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390x 6.2-8+b1 [898 B]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main zip s390x 3.0-4 [349 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main unzip s390x 6.0-5 [202 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-3 [70.8 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390x 8.5.10-1 [1652 kB]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390x 8.5.10-1 [1221 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390x 2.14.0-1 [19.2 MB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 56.2 MB in 15s (3720 kB/s)
+(Reading database ... 10722 files and directories currently installed.)
+Preparing to replace bzip2 1.0.5-7+b1 (using .../bzip2_1.0.6-1_s390x.deb) ...
+Unpacking replacement bzip2 ...
+Preparing to replace libbz2-1.0 1.0.5-7+b1 (using .../libbz2-1.0_1.0.6-1_s390x.deb) ...
+Unpacking replacement libbz2-1.0 ...
+Setting up libbz2-1.0 (1.0.6-1) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10722 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5+b1_s390x.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4+b1_s390x.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-4_s390x.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5+b1_s390x.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2+b1_s390x.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-2_s390x.deb) ...
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_s390x.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_s390x.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously unselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_s390x.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-5+b1_s390x.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2+b1_s390x.deb) ...
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.0-1_s390x.deb) ...
+Selecting previously unselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_s390x.deb) ...
+Selecting previously unselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_s390x.deb) ...
+Selecting previously unselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_s390x.deb) ...
+Selecting previously unselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-4+b1_s390x.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_s390x.deb) ...
+Selecting previously unselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-4+b1_s390x.deb) ...
+Selecting previously unselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-4+b1_s390x.deb) ...
+Selecting previously unselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_s390x.deb) ...
+Selecting previously unselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_s390x.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.16-2_all.deb) ...
+Selecting previously unselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.16-2_s390x.deb) ...
+Selecting previously unselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_s390x.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_s390x.deb) ...
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_s390x.deb) ...
+Selecting previously unselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4+b1_s390x.deb) ...
+Selecting previously unselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_s390x.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_s390x.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_s390x.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
+Selecting previously unselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_s390x.deb) ...
+Selecting previously unselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_s390x.deb) ...
+Selecting previously unselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_s390x.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_s390x.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6+b1_s390x.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-3+b1_s390x.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2+b1_s390x.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_5.09-2+b1_s390x.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5+b1_s390x.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.100_all.deb) ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5+b1_s390x.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.11_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-5+b1_s390x.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-1_s390x.deb) ...
+Selecting previously unselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_s390x.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_s390x.deb) ...
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_s390x.deb) ...
+Selecting previously unselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_s390x.deb) ...
+Selecting previously unselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_s390x.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_s390x.deb) ...
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4+b1_s390x.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4+b1_s390x.deb) ...
+Selecting previously unselected package libpaper1.
+Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_s390x.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_s390x.deb) ...
+Selecting previously unselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4+b1_s390x.deb) ...
+Selecting previously unselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3+b1_s390x.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_s390x.deb) ...
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8+b1_s390x.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8+b1_s390x.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-4_s390x.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-5_s390x.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-3_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_s390x.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_s390x.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_s390x.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up bzip2 (1.0.6-1) ...
+Setting up libpipeline1 (1.2.0-5+b1) ...
+Setting up libpcre3 (8.12-4+b1) ...
+Setting up libffi5 (3.0.10-3+b1) ...
+Setting up libglib2.0-0 (2.30.2-4) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5+b1) ...
+Setting up libcroco3 (0.6.2-2+b1) ...
+Setting up libdatrie1 (0.2.5-2) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.8-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-2) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.2-5+b1) ...
+Setting up x11-common (1:7.6+9) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2+b1) ...
+Setting up libpixman-1-0 (0.24.0-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.7-4+b1) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.7-4+b1) ...
+Setting up libxcb-shm0 (1.7-4+b1) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libthai-data (0.1.16-2) ...
+Setting up libthai0 (0.1.16-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4+b1) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5+b1) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-6+b1) ...
+Setting up man-db (2.6.0.2-3+b1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.09-2+b1) ...
+Setting up file (5.09-2+b1) ...
+Setting up gettext-base (0.18.1.1-5+b1) ...
+Setting up cdbs (0.4.100) ...
+Setting up html2text (1.3.2a-15+b1) ...
+Setting up gettext (0.18.1.1-5+b1) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.9.11) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-5+b1) ...
+Setting up gfortran (4:4.6.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
+Setting up libblas3gf (1.2.20110419-2) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
+Setting up libblas-dev (1.2.20110419-2) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
+Setting up liblapack-dev (3.3.1-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
+Setting up libtinfo-dev (5.9-4+b1) ...
+Setting up libncurses5-dev (5.9-4+b1) ...
+Setting up libpaper1 (1.1.24+nmu1) ...
+
+Creating config file /etc/papersize with new version
+Setting up libpaper-utils (1.1.24+nmu1) ...
+Setting up libpcre3-dev (8.12-4+b1) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3+b1) ...
+Setting up libpng12-dev (1.2.46-3) ...
+Setting up libreadline6-dev (6.2-8+b1) ...
+Setting up libreadline-dev (6.2-8+b1) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
+Setting up xdg-utils (1.1.0~rc1-3) ...
+Setting up tcl8.5 (8.5.10-1) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
+Setting up tk8.5 (8.5.10-1) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
+Setting up r-base-core (2.14.0-1) ...
+Setting R_PAPERSIZE_USER default to 'a4'
+
+Creating config file /etc/R/Renviron with new version
+Setting up r-base-dev (2.14.0-1) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-s390x s390x (s390x)
+Toolchain package versions: binutils_2.22-1+b1 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-5+b1 gcc-4.6_4.6.2-5+b1 libc6-dev_2.13-21+b1 libstdc++6_4.6.2-5+b1 libstdc++6-4.6-dev_4.6.2-5+b1 linux-libc-dev_3.1.4-1
+Package versions: apt_0.8.15.9+b1 base-files_6.5+b1 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-1+b1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5+b1 bzip2_1.0.6-1 cdbs_0.4.100 coreutils_8.13-3+b1 cpp_4:4.6.2-1 cpp-4.6_4.6.2-5+b1 dash_0.5.7-2+b1 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1+b1 debhelper_8.9.11 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1+b1 dpatch_2.0.33 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.2-1 g++-4.6_4.6.2-5+b1 gcc_4:4.6.2-1 gcc-4.6_4.6.2-5+b1 gcc-4.6-base_4.6.2-5+b1 gettext_0.18.1.1-5+b1 gettext-base_0.18.1.1-5+b1 gfortran_4:4.6.2-1 gfortran-4.6_4.6.2-5+b1 gnupg_1.4.11-3+b1 gpgv_1.4.11-3+b1 grep_2.9-2+b1 groff-base_1.21-6+b1 gzip_1.4-2+b1 hostname_3.06+b1 html2text_1.3.2a-15+b1 initscripts_2.88dsf-13.13+b1 insserv_1.14.0-2.1+b1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-4+b1 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-21+b1 libc-dev-bin_2.13-21+b1 libc6_2.13-21+b1 libc6-dev_2.13-21+b1 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.2-2+b1 libdatrie1_0.2.5-2 libdb5.1_5.1.25-11+b1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3+b1 libfontconfig1_2.8.0-3 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.6.2-5+b1 libgdbm3_1.8.3-10+b1 libgfortran3_4.6.2-5+b1 libglib2.0-0_2.30.2-4 libgmp10_2:5.0.2+dfsg-2+b1 libgomp1_4.6.2-5+b1 libice6_2:1.0.7-2+b1 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.09-2+b1 libmount1_2.19.1-5 libmpc2_0.9-4+b1 libmpfr4_3.1.0-3+b1 libncurses5_5.9-4+b1 libncurses5-dev_5.9-4+b1 libpam-modules_1.1.3-6+b1 libpam-modules-bin_1.1.3-6+b1 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6+b1 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4+b1 libpcre3-dev_8.12-4+b1 libpcrecpp0_8.12-4+b1 libpipeline1_1.2.0-5+b1 libpixman-1-0_0.24.0-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-8+b1 libreadline6_6.2-8+b1 libreadline6-dev_6.2-8+b1 libselinux1_2.1.0-4+b1 libsepol1_2.1.0-1.1+b1 libslang2_2.2.4-5 libsm6_2:1.2.0-2 libss2_1.42-1 libstdc++6_4.6.2-5+b1 libstdc++6-4.6-dev_4.6.2-5+b1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.16-2 libthai0_0.1.16-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4+b1 libtinfo5_5.9-4+b1 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-19+b1 libuuid1_2.19.1-5 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.7-4+b1 libxcb-shm0_1.7-4+b1 libxcb1_1.7-4+b1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5+b1 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.1.4-1 login_1:4.1.4.2+svn3283-3+b1 lsb-base_3.2-28 make_3.81-8.1+b1 man-db_2.6.0.2-3+b1 mawk_1.3.3-16+b1 mount_2.19.1-5 multiarch-support_2.13-21+b1 ncurses-base_5.9-4 ncurses-bin_5.9-4+b1 passwd_1:4.1.4.2+svn3283-3+b1 patch_2.6.1-2+b1 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p1-2+b1 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13+b1 sysvinit-utils_2.88dsf-13.13+b1 tar_1.26-3+b1 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-3 xz-utils_5.1.1alpha+20110809-3+b1 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3+b1 zlib1g-dev_1:1.2.3.4.dfsg-3+b1
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+Unpack source
+─────────────
+
+gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
+gpgv: Can't check signature: public key not found
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
+
+Check disc space
+────────────────
+
+
+dpkg-buildpackage
+─────────────────
+
+dpkg-buildpackage: source package r-bioc-limma
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
+dpkg-buildpackage: host architecture s390x
+ fakeroot debian/rules clean
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+/usr/bin/make -f debian/rules reverse-config
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "reverse-patches" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+for dir in debian/patches ; do \
+ rm -f $dir/*.log ; \
+ done
+dh_clean
+if test -d src; then \
+ find src -regex ".*\..*o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+rm -f config.log config.status
+ debian/rules build
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+mkdir -p "."
+/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `reverse-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
+patches:
+if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
+if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
+ /usr/bin/make -f debian/rules update-config ; \
+ fi
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0'
+ fakeroot debian/rules binary-arch
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+test -x debian/rules
+dh_testroot
+dh_prep
+dh_installdirs -A
+mkdir -p "."
+dh_installdirs usr/lib/R/site-library
+if test -f /usr/bin/xvfb-run; then \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ . ; \
+ else \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
+ --clean . ;\
+ fi
+* installing *source* package 'limma' ...
+** libs
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
+normexp.c: In function 'fit_saddle_nelder_mead':
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+** R
+** inst
+** preparing package for lazy loading
+** help
+*** installing help indices
+** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
+** testing if installed package can be loaded
+
+* DONE (limma)
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+if test -f debian/overrides; then \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -m 0644 debian/overrides \
+ /build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ fi
+Adding cdbs dependencies to debian/r-bioc-limma.substvars
+dh_installdirs -pr-bioc-limma
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
+dh_installdocs -pr-bioc-limma
+dh_installexamples -pr-bioc-limma
+dh_installman -pr-bioc-limma
+dh_installinfo -pr-bioc-limma
+dh_installmenu -pr-bioc-limma
+dh_installcron -pr-bioc-limma
+dh_installinit -pr-bioc-limma
+dh_installdebconf -pr-bioc-limma
+dh_installemacsen -pr-bioc-limma
+dh_installcatalogs -pr-bioc-limma
+dh_installpam -pr-bioc-limma
+dh_installlogrotate -pr-bioc-limma
+dh_installlogcheck -pr-bioc-limma
+dh_installchangelogs -pr-bioc-limma inst/doc/changelog.txt
+dh_installudev -pr-bioc-limma
+dh_lintian -pr-bioc-limma
+dh_bugfiles -pr-bioc-limma
+dh_install -pr-bioc-limma
+dh_link -pr-bioc-limma
+dh_installmime -pr-bioc-limma
+dh_installgsettings -pr-bioc-limma
+dh_strip -pr-bioc-limma
+dh_compress -pr-bioc-limma
+dh_fixperms -pr-bioc-limma
+dh_makeshlibs -pr-bioc-limma
+dh_installdeb -pr-bioc-limma
+dh_perl -pr-bioc-limma
+dh_shlibdeps -pr-bioc-limma
+dh_gencontrol -pr-bioc-limma
+dh_md5sums -pr-bioc-limma
+dh_builddeb -pr-bioc-limma
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.10.0-1_s390x.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build r-bioc-limma-3.10.0
+dpkg-buildpackage: binary only upload (no source included)
+────────────────────────────────────────────────────────────────────────────────
+Build finished at 20111204-1501
+
+r-bioc-limma_3.10.0-1_s390x.changes:
+Format: 1.8
+Date: Fri, 04 Nov 2011 13:35:49 +0900
+Source: r-bioc-limma
+Binary: r-bioc-limma
+Architecture: s390x
+Version: 3.10.0-1
+Distribution: sid
+Urgency: low
+Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ r-bioc-limma - linear models for microarray data
+Changes:
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
+ .
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
+Checksums-Sha1:
+ 1267767968d03f7cd721190a1cebd33ca2c31c8d 1471634 r-bioc-limma_3.10.0-1_s390x.deb
+Checksums-Sha256:
+ a3402e9cfc25d0b9d56abdd994ab919246c6c815e8dc0415abc55b9e6ee66caa 1471634 r-bioc-limma_3.10.0-1_s390x.deb
+Files:
+ 7db57adebddca21f0df35673f40f1437 1471634 gnu-r optional r-bioc-limma_3.10.0-1_s390x.deb
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Package contents │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.10.0-1_s390x.deb
+───────────────────────────────
+
+ new debian package, version 2.0.
+ size 1471634 bytes: control archive= 1535 bytes.
+ 769 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
+ Package: r-bioc-limma
+ Version: 3.10.0-1
+ Architecture: s390x
+ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Installed-Size: 1675
+ Depends: libc6 (>= 2.13), r-base-core (>= 2.14.0~)
+ Section: gnu-r
+ Priority: optional
+ Homepage: http://bioinf.wehi.edu.au/limma/
+ Description: linear models for microarray data
+ A Bioconductor package for the analysis of gene expression microarray data,
+ especially the use of linear models for analysing designed experiments and the
+ assessment of differential expression. The package includes pre-processing
+ capabilities for two-colour spotted arrays. The differential expression methods
+ apply to all array platforms and treat Affymetrix, single channel and two
+ channel experiments in a unified way.
+
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9458 2011-12-04 15:01 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 383 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197384 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3783 2011-12-04 15:01 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34556 2011-12-04 15:01 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10632 2011-12-04 15:01 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1353 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 456033 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3277 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2392 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6221 2011-12-04 15:01 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1901 2011-12-04 15:01 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 737661 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 42743 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 87742 2011-12-04 15:01 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 966 2011-12-04 15:01 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 1984 2011-12-04 15:01 ./usr/lib/R/site-library/limma/NEWS.Rd
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 518 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 216 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5603 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2886 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1055 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 6023 2011-12-04 15:01 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rwxr-xr-x root/root 1230 2011-12-04 15:01 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 329 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2118 2011-12-04 15:01 ./usr/share/doc/r-bioc-limma/copyright
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Finished │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-s390x-sbuild-8ea54fc1-535e-404d-acfd-f1f876076319/sid-s390x-sbuild/build/buildd-r-bioc-limma_3.10.0-1-s390x-MqiCEM
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: s390x
+Build-Space: 5308
+Build-Time: 14
+Distribution: sid
+Install-Time: 31
+Job: r-bioc-limma_3.10.0-1
+Package: r-bioc-limma
+Package-Time: 83
+Source-Version: 3.10.0-1
+Space: 5308
+Status: successful
+Version: 3.10.0-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20111204-1501
+Build needed 00:01:23, 5308k disc space
+Signature with key '96C8554F' requested:
diff --git a/sparc.log b/sparc.log
index ed779f2..4d42dbe 100644
--- a/sparc.log
+++ b/sparc.log
@@ -1,69 +1,70 @@
-From buildd at lebrun.debian.org Tue Aug 16 12:53:16 2011
-Return-path: <buildd at lebrun.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at spontini.debian.org Fri Nov 04 07:36:09 2011
+Return-path: <buildd at spontini.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
- id 1QtJ8u-0005Bi-7M
- for logs at buildd.debian.org; Tue, 16 Aug 2011 12:53:16 +0000
-Received: from lebrun.debian.org ([193.198.184.10])
+ (Exim 4.72) (envelope-from <buildd at spontini.debian.org>)
+ id 1RMEJt-0000WQ-Kq
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 07:36:09 +0000
+Received: from spontini.debian.org ([2607:f8f0:610:4000:a00:20ff:fea0:918b])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=lebrun.debian.org, EMAIL=hostmaster at lebrun.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
- id 1QtJ8s-0000p2-Rp
- for logs at buildd.debian.org; Tue, 16 Aug 2011 12:53:15 +0000
-Received: from buildd by lebrun.debian.org with local (Exim 4.72)
- (envelope-from <buildd at lebrun.debian.org>)
- id 1QtJ8q-0003jR-FQ; Tue, 16 Aug 2011 12:53:12 +0000
-Message-Id: <E1QtJ8q-0003jR-FQ at lebrun.debian.org>
+ CN=spontini.debian.org,
+ EMAIL=hostmaster at spontini.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at spontini.debian.org>)
+ id 1RMEJr-0007CJ-44
+ for logs at buildd.debian.org; Fri, 04 Nov 2011 07:36:07 +0000
+Received: from buildd by spontini.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at spontini.debian.org>)
+ id 1RMEJn-0003V0-OE; Fri, 04 Nov 2011 07:36:03 +0000
+Message-Id: <E1RMEJn-0003V0-OE at spontini.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Tue, 16 Aug 2011 12:53:12 +0000
-From: buildd on lebrun <buildd at lebrun.debian.org>
-To: logs at buildd.debian.org,buildd-admin at lebrun.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.3-1 on sparc (dist=sid)
-Key-Id: 632E3DB6
+Date: Fri, 4 Nov 2011 07:36:03 +0000
+From: buildd on spontini <buildd at spontini.debian.org>
+To: logs at buildd.debian.org,buildd-admin at spontini.debian.org
+Subject: Log for successful build of r-bioc-limma_3.10.0-1 on sparc (dist=sid)
+Key-Id: 0D4C040C
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lebrun.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on spontini.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.3-1 (sparc) 16 Aug 2011 12:47 ║
+║ r-bioc-limma 3.10.0-1 (sparc) 04 Nov 2011 07:27 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.3-1
-Source Version: 3.8.3-1
+Version: 3.10.0-1
+Source Version: 3.10.0-1
Architecture: sparc
-Get:1 http://debian.carnet.hr unstable InRelease [146 kB]
-Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://debian.carnet.hr unstable/main Sources [5449 kB]
+Get:1 http://incoming.debian.org unstable InRelease [146 kB]
+Get:2 http://mirror-ubc.debian.org unstable InRelease [146 kB]
Ign http://incoming.debian.org InRelease
-Get:4 http://debian.carnet.hr unstable/contrib Sources [52.5 kB]
-Get:5 http://incoming.debian.org Release.gpg [836 B]
-Get:6 http://incoming.debian.org Release [1604 B]
-Get:7 http://incoming.debian.org unstable/main Sources [5449 kB]
-Get:8 http://debian.carnet.hr unstable/non-free Sources [95.7 kB]
-Get:9 http://debian.carnet.hr unstable/main sparc Packages [7439 kB]
-Get:10 http://debian.carnet.hr unstable/contrib sparc Packages [54.7 kB]
-Ign http://debian.carnet.hr unstable/contrib TranslationIndex
-Get:11 http://debian.carnet.hr unstable/main TranslationIndex [2185 B]
-Get:12 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
-Get:13 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
-Get:14 http://incoming.debian.org unstable/main sparc Packages [7439 kB]
-Get:15 http://incoming.debian.org unstable/contrib sparc Packages [54.7 kB]
+Get:3 http://incoming.debian.org Release.gpg [836 B]
+Get:4 http://incoming.debian.org Release [1604 B]
+Get:5 http://mirror-ubc.debian.org unstable/main Sources [5890 kB]
+Get:6 http://incoming.debian.org unstable/main Sources [5890 kB]
+Get:7 http://mirror-ubc.debian.org unstable/contrib Sources [56.9 kB]
+Get:8 http://mirror-ubc.debian.org unstable/non-free Sources [103 kB]
+Get:9 http://mirror-ubc.debian.org unstable/main sparc Packages [7652 kB]
+Get:10 http://mirror-ubc.debian.org unstable/contrib sparc Packages [55.4 kB]
+Ign http://mirror-ubc.debian.org unstable/contrib TranslationIndex
+Get:11 http://mirror-ubc.debian.org unstable/main TranslationIndex [2045 B]
+Ign http://mirror-ubc.debian.org unstable/contrib Translation-en
+Get:12 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [103 kB]
+Get:14 http://incoming.debian.org unstable/main sparc Packages [7652 kB]
+Get:15 http://incoming.debian.org unstable/contrib sparc Packages [55.4 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:16 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
-Get:17 http://incoming.debian.org Sources [38.3 kB]
-Get:18 http://incoming.debian.org Packages [255 kB]
-Ign http://debian.carnet.hr unstable/contrib Translation-en
+Get:16 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
+Get:17 http://incoming.debian.org Sources [31.5 kB]
+Get:18 http://incoming.debian.org Packages [552 kB]
Ign http://incoming.debian.org Translation-en
Ign http://incoming.debian.org unstable/contrib Translation-en
-Fetched 26.8 MB in 28s (938 kB/s)
+Fetched 28.4 MB in 1min 4s (438 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +85,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-limma.git
-Need to get 921 kB of source archives.
-Get:1 http://debian.carnet.hr/debian/ unstable/main r-bioc-limma 3.8.3-1 (dsc) [1931 B]
-Get:2 http://debian.carnet.hr/debian/ unstable/main r-bioc-limma 3.8.3-1 (tar) [917 kB]
-Get:3 http://debian.carnet.hr/debian/ unstable/main r-bioc-limma 3.8.3-1 (diff) [2212 B]
-Fetched 921 kB in 0s (1063 kB/s)
+Need to get 974 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (dsc) [1986 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (tar) [970 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.10.0-1 (diff) [2332 B]
+Fetched 974 kB in 1s (634 kB/s)
Download complete and in download only mode
Check arch
@@ -102,18 +103,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -125,63 +126,66 @@ Checking for already installed dependencies...
base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1+b2)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-4)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
bsdutils: already installed (1:2.19.1-5)
mount: already installed (2.19.1-5)
util-linux: already installed (2.19.1-5)
-libc6-dev: already installed (2.13-16)
-libc6-dev-sparc64: already installed (2.13-16)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+libc6-dev: already installed (2.13-21)
+libc6-dev-sparc64: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.9.4
+Using default version 8.9.8
cdbs: missing
r-base-dev: missing
-Using default version 2.13.1-1
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ binutils-gold gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -190,286 +194,327 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 3 not upgraded.
-Need to get 49.9 MB of archives.
-After this operation, 118 MB of additional disk space will be used.
-Get:1 http://debian.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.2.0-3 [36.0 kB]
-Get:2 http://debian.carnet.hr/debian/ unstable/main libpcre3 sparc 8.12-4 [231 kB]
-Get:3 http://debian.carnet.hr/debian/ unstable/main libdatrie1 sparc 0.2.4-3 [25.3 kB]
-Get:4 http://debian.carnet.hr/debian/ unstable/main libexpat1 sparc 2.0.1-7 [131 kB]
-Get:5 http://debian.carnet.hr/debian/ unstable/main libfreetype6 sparc 2.4.6-1 [394 kB]
-Get:6 http://debian.carnet.hr/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:7 http://debian.carnet.hr/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:8 http://debian.carnet.hr/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:9 http://debian.carnet.hr/debian/ unstable/main libfontconfig1 sparc 2.8.0-3 [277 kB]
-Get:10 http://debian.carnet.hr/debian/ unstable/main libgfortran3 sparc 4.6.1-6 [260 kB]
-Get:11 http://debian.carnet.hr/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:12 http://debian.carnet.hr/debian/ unstable/main libice6 sparc 2:1.0.7-2 [50.9 kB]
-Get:13 http://debian.carnet.hr/debian/ unstable/main libpixman-1-0 sparc 0.22.2-1 [357 kB]
-Get:14 http://debian.carnet.hr/debian/ unstable/main libpng12-0 sparc 1.2.46-3 [179 kB]
-Get:15 http://debian.carnet.hr/debian/ unstable/main libxau6 sparc 1:1.0.6-3 [16.1 kB]
-Get:16 http://debian.carnet.hr/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-3 [21.9 kB]
-Get:17 http://debian.carnet.hr/debian/ unstable/main libxcb1 sparc 1.7-3 [41.0 kB]
-Get:18 http://debian.carnet.hr/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:19 http://debian.carnet.hr/debian/ unstable/main libx11-6 sparc 2:1.4.4-1 [831 kB]
-Get:20 http://debian.carnet.hr/debian/ unstable/main libxcb-render0 sparc 1.7-3 [15.5 kB]
-Get:21 http://debian.carnet.hr/debian/ unstable/main libxcb-shm0 sparc 1.7-3 [9284 B]
-Get:22 http://debian.carnet.hr/debian/ unstable/main libxrender1 sparc 1:0.9.6-2 [28.8 kB]
-Get:23 http://debian.carnet.hr/debian/ unstable/main libcairo2 sparc 1.10.2-6.1 [912 kB]
-Get:24 http://debian.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.28.6-1 [1556 kB]
-Get:25 http://debian.carnet.hr/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:26 http://debian.carnet.hr/debian/ unstable/main libthai0 sparc 0.1.15-2 [41.6 kB]
-Get:27 http://debian.carnet.hr/debian/ unstable/main libxft2 sparc 2.2.0-3 [55.0 kB]
-Get:28 http://debian.carnet.hr/debian/ unstable/main fontconfig sparc 2.8.0-3 [334 kB]
-Get:29 http://debian.carnet.hr/debian/ unstable/main libpango1.0-0 sparc 1.28.4-2 [400 kB]
-Get:30 http://debian.carnet.hr/debian/ unstable/main libpcrecpp0 sparc 8.12-4 [111 kB]
-Get:31 http://debian.carnet.hr/debian/ unstable/main libsm6 sparc 2:1.2.0-2 [28.6 kB]
-Get:32 http://debian.carnet.hr/debian/ unstable/main libxext6 sparc 2:1.3.0-3 [47.5 kB]
-Get:33 http://debian.carnet.hr/debian/ unstable/main libxss1 sparc 1:1.2.1-2 [15.9 kB]
-Get:34 http://debian.carnet.hr/debian/ unstable/main libxt6 sparc 1:1.1.1-2 [184 kB]
-Get:35 http://debian.carnet.hr/debian/ unstable/main bsdmainutils sparc 8.2.3 [206 kB]
-Get:36 http://debian.carnet.hr/debian/ unstable/main groff-base sparc 1.21-6 [1155 kB]
-Get:37 http://debian.carnet.hr/debian/ unstable/main man-db sparc 2.6.0.2-2 [1005 kB]
-Get:38 http://debian.carnet.hr/debian/ unstable/main libmagic1 sparc 5.04-5+b1 [239 kB]
-Get:39 http://debian.carnet.hr/debian/ unstable/main file sparc 5.04-5+b1 [49.6 kB]
-Get:40 http://debian.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-4 [132 kB]
-Get:41 http://debian.carnet.hr/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-4 [816 kB]
-Get:42 http://debian.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
-Get:43 http://debian.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.2-1 [119 kB]
-Get:44 http://debian.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-4 [424 kB]
-Get:45 http://debian.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-4 [1985 kB]
-Get:46 http://debian.carnet.hr/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:47 http://debian.carnet.hr/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:48 http://debian.carnet.hr/debian/ unstable/main debhelper all 8.9.4 [561 kB]
-Get:49 http://debian.carnet.hr/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:50 http://debian.carnet.hr/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:51 http://debian.carnet.hr/debian/ unstable/main gfortran-4.6 sparc 4.6.1-6 [4145 kB]
-Get:52 http://debian.carnet.hr/debian/ unstable/main gfortran sparc 4:4.6.1-2 [1124 B]
-Get:53 http://debian.carnet.hr/debian/ unstable/main libblas3gf sparc 1.2.20110419-2 [188 kB]
-Get:54 http://debian.carnet.hr/debian/ unstable/main libblas-dev sparc 1.2.20110419-2 [200 kB]
-Get:55 http://debian.carnet.hr/debian/ unstable/main libbz2-dev sparc 1.0.5-6 [36.6 kB]
-Get:56 http://debian.carnet.hr/debian/ unstable/main libjpeg62 sparc 6b1-2 [87.2 kB]
-Get:57 http://debian.carnet.hr/debian/ unstable/main libjpeg8 sparc 8c-2 [136 kB]
-Get:58 http://debian.carnet.hr/debian/ unstable/main libjpeg8-dev sparc 8c-2 [239 kB]
-Get:59 http://debian.carnet.hr/debian/ unstable/main liblapack3gf sparc 3.3.1-1 [3975 kB]
-Get:60 http://debian.carnet.hr/debian/ unstable/main liblapack-dev sparc 3.3.1-1 [4389 kB]
-Get:61 http://debian.carnet.hr/debian/ unstable/main libncurses5-dev sparc 5.9-1 [481 kB]
-Get:62 http://debian.carnet.hr/debian/ unstable/main libpaper1 sparc 1.1.24+nmu1 [21.1 kB]
-Get:63 http://debian.carnet.hr/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu1 [17.9 kB]
-Get:64 http://debian.carnet.hr/debian/ unstable/main libpcre3-dev sparc 8.12-4 [312 kB]
-Get:65 http://debian.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
-Get:66 http://debian.carnet.hr/debian/ unstable/main libpng12-dev sparc 1.2.46-3 [262 kB]
-Get:67 http://debian.carnet.hr/debian/ unstable/main libreadline6-dev sparc 6.2-2 [258 kB]
-Get:68 http://debian.carnet.hr/debian/ unstable/main libreadline-dev sparc 6.2-2 [880 B]
-Get:69 http://debian.carnet.hr/debian/ unstable/main libtiff4 sparc 3.9.5-1 [192 kB]
-Get:70 http://debian.carnet.hr/debian/ unstable/main zip sparc 3.0-4 [335 kB]
-Get:71 http://debian.carnet.hr/debian/ unstable/main unzip sparc 6.0-5 [191 kB]
-Get:72 http://debian.carnet.hr/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:73 http://debian.carnet.hr/debian/ unstable/main tcl8.5 sparc 8.5.10-1 [1599 kB]
-Get:74 http://debian.carnet.hr/debian/ unstable/main tk8.5 sparc 8.5.10-1 [1143 kB]
-Get:75 http://debian.carnet.hr/debian/ unstable/main r-base-core sparc 2.13.1-1 [15.1 MB]
-Get:76 http://debian.carnet.hr/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 76 newly installed, 0 to remove and 8 not upgraded.
+Need to get 68.6 MB of archives.
+After this operation, 115 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 sparc 4.6.2-3 [21.8 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6-base sparc 4.6.2-3 [136 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 sparc 1:4.6.2-3 [29.6 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.6 sparc 4.6.2-3 [3532 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.6-dev sparc 4.6.2-3 [1653 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.6 sparc 4.6.2-3 [5520 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6 sparc 4.6.2-3 [3704 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 sparc 4.6.2-3 [321 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 sparc 1.2.0-4 [34.9 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 sparc 8.12-4 [231 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 sparc 2.28.8-1 [1508 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-5 [816 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 sparc 0.6.2-2 [106 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 sparc 0.2.4-3 [25.3 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 sparc 2.0.1-7.2 [128 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 sparc 2.4.7-2 [400 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 sparc 2.8.0-3 [277 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 sparc 4.6.2-3 [260 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libice6 sparc 2:1.0.7-2 [50.9 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 sparc 0.23.8-1 [376 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 sparc 1.2.46-3 [179 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 sparc 1:1.0.6-3 [16.1 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-3 [21.9 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 sparc 1.7-3 [41.0 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 sparc 2:1.4.4-2 [830 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 sparc 1.7-3 [15.5 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 sparc 1.7-3 [9284 B]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 sparc 1:0.9.6-2 [28.8 kB]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 sparc 1.10.2-6.1 [912 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 sparc 0.1.15-2 [41.6 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 sparc 2.2.0-3 [55.0 kB]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig sparc 2.8.0-3 [334 kB]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 sparc 1.29.4-2 [416 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 sparc 8.12-4 [111 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 sparc 2:1.2.0-2 [28.6 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 sparc 8c-2 [136 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 sparc 3.9.5-2 [186 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 sparc 2:1.3.0-3 [47.5 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 sparc 1:1.2.1-2 [15.9 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 sparc 1:1.1.1-2 [184 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils sparc 8.2.3 [206 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main groff-base sparc 1.21-6 [1155 kB]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main man-db sparc 2.6.0.2-2 [1005 kB]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 sparc 5.09-2 [245 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main file sparc 5.09-2 [51.5 kB]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base sparc 0.18.1.1-5 [140 kB]
+Get:54 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
+Get:56 http://mirror-ubc.debian.org/debian/ unstable/main gettext sparc 0.18.1.1-5 [1983 kB]
+Get:57 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:58 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 sparc 4.6.2-3 [4144 kB]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main gfortran sparc 4:4.6.1-3 [1132 B]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libblas3gf sparc 1.2.20110419-2 [188 kB]
+Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev sparc 1.2.20110419-2 [200 kB]
+Get:65 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev sparc 1.0.5-7 [35.8 kB]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev sparc 8c-2 [239 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3gf sparc 3.3.1-1 [3975 kB]
+Get:68 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev sparc 3.3.1-1 [4389 kB]
+Get:69 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo-dev sparc 5.9-2 [67.9 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev sparc 5.9-2 [415 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 sparc 1.1.24+nmu1 [21.1 kB]
+Get:72 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu1 [17.9 kB]
+Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev sparc 8.12-4 [312 kB]
+Get:74 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev sparc 1.2.46-3 [262 kB]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev sparc 6.2-7 [258 kB]
+Get:77 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev sparc 6.2-7 [892 B]
+Get:78 http://mirror-ubc.debian.org/debian/ unstable/main zip sparc 3.0-4 [335 kB]
+Get:79 http://mirror-ubc.debian.org/debian/ unstable/main unzip sparc 6.0-5 [191 kB]
+Get:80 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:81 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 sparc 8.5.10-1 [1599 kB]
+Get:82 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 sparc 8.5.10-1 [1143 kB]
+Get:83 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core sparc 2.14.0-1 [19.0 MB]
+Get:84 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 49.9 MB in 32s (1548 kB/s)
-Selecting previously deselected package libpipeline1.
-(Reading database ... 11000 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_sparc.deb) ...
-Selecting previously deselected package libpcre3.
+Fetched 68.6 MB in 18s (3795 kB/s)
+(Reading database ... 10913 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.2-1 (using .../libgomp1_4.6.2-3_sparc.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.2-1 (using .../gcc-4.6-base_4.6.2-3_sparc.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.2-3) ...
+(Reading database ... 10913 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.2-1 (using .../libgcc1_1%3a4.6.2-3_sparc.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.2-3) ...
+(Reading database ... 10913 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.2-1 (using .../cpp-4.6_4.6.2-3_sparc.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.2-1 (using .../libstdc++6-4.6-dev_4.6.2-3_sparc.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.2-1 (using .../g++-4.6_4.6.2-3_sparc.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.2-1 (using .../gcc-4.6_4.6.2-3_sparc.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.2-1 (using .../libstdc++6_4.6.2-3_sparc.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.2-3) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10913 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_sparc.deb) ...
+Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_sparc.deb) ...
-Selecting previously deselected package libdatrie1.
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_sparc.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_sparc.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_sparc.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_sparc.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_sparc.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_sparc.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_sparc.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_sparc.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_sparc.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_sparc.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_sparc.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_sparc.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_sparc.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_sparc.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_sparc.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_sparc.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_sparc.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_sparc.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_sparc.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_sparc.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_sparc.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_sparc.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_sparc.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_sparc.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_sparc.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_sparc.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_sparc.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_sparc.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_sparc.deb) ...
-Selecting previously deselected package libpcrecpp0.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_sparc.deb) ...
+Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_sparc.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_sparc.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_sparc.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_sparc.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_sparc.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_sparc.deb) ...
-Selecting previously deselected package libxss1.
+Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_sparc.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_sparc.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_sparc.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_sparc.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_sparc.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_sparc.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_sparc.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_sparc.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_sparc.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_sparc.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_sparc.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_sparc.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_sparc.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_sparc.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-4_sparc.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_sparc.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_sparc.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_sparc.deb) ...
-Selecting previously deselected package libblas3gf.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_sparc.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_sparc.deb) ...
+Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_sparc.deb) ...
-Selecting previously deselected package libblas-dev.
+Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_sparc.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_sparc.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_sparc.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_sparc.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_sparc.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_sparc.deb) ...
-Selecting previously deselected package liblapack3gf.
+Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_sparc.deb) ...
-Selecting previously deselected package liblapack-dev.
+Selecting previously unselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_sparc.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_sparc.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_sparc.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_sparc.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_sparc.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_sparc.deb) ...
-Selecting previously deselected package libpcre3-dev.
+Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_sparc.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_sparc.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_sparc.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_sparc.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_sparc.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_sparc.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_sparc.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_sparc.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_sparc.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_sparc.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_sparc.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_sparc.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_sparc.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_sparc.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-3) ...
+Setting up cpp-4.6 (4.6.2-3) ...
+Setting up gcc-4.6 (4.6.2-3) ...
+Setting up libpipeline1 (1.2.0-4) ...
Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.6-1) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-6) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
@@ -479,35 +524,31 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-4) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-4) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.4) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-6) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -515,9 +556,8 @@ Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -525,20 +565,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-3) ...
+Setting up g++-4.6 (4.6.2-3) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-sparc64-smp sparc (sparc64)
-Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b2 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc6_2.13-16 libc6-dev_2.13-16 libc6-dev-sparc64_2.13-16 libc6-sparc64_2.13-16 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15+b1 mount_2.19.1-5 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b2 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libc6-dev-sparc64_2.13-21 libc6-sparc64_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-3 libsepol1_2.1.0-1.1 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011m-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -549,12 +591,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Nov 4 05:24:43 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
-dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.10.0-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.10.0
+dpkg-source: info: unpacking r-bioc-limma_3.10.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.10.0-1.diff.gz
Check disc space
────────────────
@@ -563,24 +605,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.3-1
- dpkg-source --before-build r-bioc-limma-3.8.3
+dpkg-buildpackage: source version 3.10.0-1
+ dpkg-source --before-build r-bioc-limma-3.10.0
dpkg-buildpackage: host architecture sparc
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -601,20 +638,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -625,43 +662,45 @@ mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/src'
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
-gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/src'
-installing to /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+gcc -std=gnu99 -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/src'
+installing to /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'limma.Rnw'
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7/r-bioc-limma-3.10.0/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -693,58 +732,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_sparc.deb'.
- dpkg-genchanges -B -msparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org> >../r-bioc-limma_3.8.3-1_sparc.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.10.0-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (spontini) <buildd_sparc-spontini at buildd.debian.org> >../r-bioc-limma_3.10.0-1_sparc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.3
+ dpkg-source --after-build r-bioc-limma-3.10.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110816-1252
+Build finished at 20111104-0735
-r-bioc-limma_3.8.3-1_sparc.changes:
+r-bioc-limma_3.10.0-1_sparc.changes:
Format: 1.8
-Date: Sun, 14 Aug 2011 20:30:21 +0900
+Date: Fri, 04 Nov 2011 13:35:49 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: sparc
-Version: 3.8.3-1
+Version: 3.10.0-1
Distribution: sid
Urgency: low
-Maintainer: sparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org>
+Maintainer: sparc Build Daemon (spontini) <buildd_sparc-spontini at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
Changes:
- r-bioc-limma (3.8.3-1) unstable; urgency=low
+ r-bioc-limma (3.10.0-1) unstable; urgency=low
.
- * New upstream release.
- * [e891bb6b] Corrected VCS-Git url.
+ [eebb062] New upstream release (Bioconductor 2.9).
+ [c1a8767] Include 7 digits of the commit ID in the changelog entry.
Checksums-Sha1:
- 55b6c2303b4ae1ce4c2a521686e744ead5a8e393 1401750 r-bioc-limma_3.8.3-1_sparc.deb
+ 3366454e66afeee7f0f780df0d4815aee6dfcd57 1468994 r-bioc-limma_3.10.0-1_sparc.deb
Checksums-Sha256:
- 6619ced029153d5fa2241aa669fba96cfb6c20edcf705bc963503227ef764ba9 1401750 r-bioc-limma_3.8.3-1_sparc.deb
+ 6f8b40ef4030c9967d3110cbaaae840a8c6351d0b363048949d4b3318cd7a90f 1468994 r-bioc-limma_3.10.0-1_sparc.deb
Files:
- 89a8cc53e17942d8b0862106d9d3a30e 1401750 gnu-r optional r-bioc-limma_3.8.3-1_sparc.deb
+ 6dffbcccd8dcaa387f19b434ddc57a77 1468994 gnu-r optional r-bioc-limma_3.10.0-1_sparc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.3-1_sparc.deb
-──────────────────────────────
+r-bioc-limma_3.10.0-1_sparc.deb
+───────────────────────────────
new debian package, version 2.0.
- size 1401750 bytes: control archive= 1505 bytes.
- 767 bytes, 16 lines control
- 2226 bytes, 29 lines md5sums
+ size 1468994 bytes: control archive= 1539 bytes.
+ 768 bytes, 16 lines control
+ 2297 bytes, 30 lines md5sums
Package: r-bioc-limma
- Version: 3.8.3-1
+ Version: 3.10.0-1
Architecture: sparc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 1672
- Depends: libc6 (>= 2.6), r-base-core (>= 2.13.1~)
+ Depends: libc6 (>= 2.6), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -756,50 +795,51 @@ r-bioc-limma_3.8.3-1_sparc.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2117 2011-08-16 12:52 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 234 2011-08-16 12:52 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-08-16 12:52 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 9360 2011-08-16 12:52 ./usr/lib/R/site-library/limma/INDEX
--rw-r--r-- root/root 1009 2011-08-16 12:52 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1344 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 2363 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 3254 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 450261 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6150 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/AnIndex
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-08-16 12:52 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3741 2011-08-16 12:52 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 173271 2011-08-16 12:52 ./usr/lib/R/site-library/limma/R/limma.rdb
--rwxr-xr-x root/root 1230 2011-08-16 12:52 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 45616 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84899 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 687780 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 217 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5524 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 505 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 2854 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5947 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 1051 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/package.rds
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8168 2011-08-16 12:52 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-08-16 12:52 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34039 2011-08-16 12:52 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2011-11-04 07:35 ./
+drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/
+drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2118 2011-11-04 07:33 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 329 2011-11-04 07:33 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 26832 2011-10-31 23:30 ./usr/share/doc/r-bioc-limma/changelog.gz
+drwxr-xr-x root/root 0 2011-11-04 07:34 ./usr/lib/
+drwxr-xr-x root/root 0 2011-11-04 07:34 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2011-11-04 07:34 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34556 2011-11-04 07:34 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-04 07:34 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 737661 2011-11-04 07:34 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1711 2011-11-04 07:34 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 42743 2011-11-04 07:34 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 87742 2011-11-04 07:34 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-11-04 07:34 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1230 2011-11-04 07:34 ./usr/lib/R/site-library/limma/CITATION
+-rw-r--r-- root/root 970 2011-11-04 07:34 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8168 2011-11-04 07:35 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 5603 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 6023 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 518 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 1051 2011-11-04 07:34 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 2886 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 216 2011-11-04 07:35 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+drwxr-xr-x root/root 0 2011-11-04 07:34 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 3787 2011-11-04 07:34 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 383 2011-11-04 07:34 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 197383 2011-11-04 07:34 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 1901 2011-11-04 07:34 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 9458 2011-11-04 07:35 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 3281 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2392 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1352 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6221 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 455465 2011-11-04 07:34 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1984 2011-11-04 07:34 ./usr/lib/R/site-library/limma/NEWS.Rd
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -813,7 +853,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-sparc-sbuild-67c6fa7d-53a0-4513-b05d-8c181080d2c2/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-6e71b994-3344-410c-9600-187634e8e52d/build/buildd-r-bioc-limma_3.10.0-1-sparc-bFtTk7
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -821,18 +861,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: sparc
-Build-Space: 5080
-Build-Time: 57
+Build-Space: 5300
+Build-Time: 133
Distribution: sid
-Install-Time: 203
-Job: r-bioc-limma_3.8.3-1
+Install-Time: 245
+Job: r-bioc-limma_3.10.0-1
Package: r-bioc-limma
-Package-Time: 310
-Source-Version: 3.8.3-1
-Space: 5080
+Package-Time: 488
+Source-Version: 3.10.0-1
+Space: 5300
Status: successful
-Version: 3.8.3-1
+Version: 3.10.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110816-1252
-Build needed 00:05:10, 5080k disc space
-Signature with key '632E3DB6' requested:
+Finished at 20111104-0735
+Build needed 00:08:08, 5300k disc space
+Signature with key '0D4C040C' requested:
--
linear models for microarray data
More information about the debian-med-commit
mailing list