[med-svn] r9910 - trunk/packages/raster3d/trunk/debian
Andreas Tille
tille at alioth.debian.org
Wed Mar 7 08:08:44 UTC 2012
Author: tille
Date: 2012-03-07 08:08:43 +0000 (Wed, 07 Mar 2012)
New Revision: 9910
Modified:
trunk/packages/raster3d/trunk/debian/changelog
trunk/packages/raster3d/trunk/debian/compat
trunk/packages/raster3d/trunk/debian/control
trunk/packages/raster3d/trunk/debian/copyright
trunk/packages/raster3d/trunk/debian/upstream
Log:
- change Build-Depends of the package from libpng12-dev to libpng-dev
- debhelper 9 to enable hardening flags
- moved extra references from copyright to upstream_additional_references for later inclusion into upstream
- debian/copyright now DEP5 compatible
- Standards-Version 3.9.3
Modified: trunk/packages/raster3d/trunk/debian/changelog
===================================================================
--- trunk/packages/raster3d/trunk/debian/changelog 2012-03-07 08:06:17 UTC (rev 9909)
+++ trunk/packages/raster3d/trunk/debian/changelog 2012-03-07 08:08:43 UTC (rev 9910)
@@ -1,3 +1,26 @@
+raster3d (3.0-2-4) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * debian/upstream-metadata.yaml renamed to debian/upstream
+
+ [ Andreas Tille ]
+ * debian/control:
+ - change Build-Depends of the package from libpng12-dev to libpng-dev
+ Closes: #662490
+ - Standards-Version: 3.9.3 (no changes needed)
+ * debian/copyright:
+ - Changed to DEP5 and checked via
+ cme fix dpkg-copyright
+ - moved extra references to debian/upstream_additional_references
+ * debian/upstream: Added DOI and URL fields
+ * debian/upstream_additional_references: Moved extra references
+ from debian/copyright to this file. It will be included into
+ debian/upstream once is clarified how to handle more than one
+ reference
+ * Debhelper 9 (control+compat)
+
+ -- Andreas Tille <tille at debian.org> Wed, 07 Mar 2012 08:21:33 +0100
+
raster3d (3.0-2-3) unstable; urgency=low
* Standards-Version: 3.9.2
Modified: trunk/packages/raster3d/trunk/debian/compat
===================================================================
--- trunk/packages/raster3d/trunk/debian/compat 2012-03-07 08:06:17 UTC (rev 9909)
+++ trunk/packages/raster3d/trunk/debian/compat 2012-03-07 08:08:43 UTC (rev 9910)
@@ -1 +1 @@
-8
+9
Modified: trunk/packages/raster3d/trunk/debian/control
===================================================================
--- trunk/packages/raster3d/trunk/debian/control 2012-03-07 08:06:17 UTC (rev 9909)
+++ trunk/packages/raster3d/trunk/debian/control 2012-03-07 08:08:43 UTC (rev 9910)
@@ -5,13 +5,13 @@
DM-Upload-Allowed: yes
Uploaders: Nelson A. de Oliveira <naoliv at debian.org>,
Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 8),
+Build-Depends: debhelper (>= 9),
gfortran,
libgd2-xpm-dev,
libjpeg-dev,
- libpng12-dev,
+ libpng-dev,
libtiff4-dev
-Standards-Version: 3.9.2
+Standards-Version: 3.9.3
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/raster3d/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/raster3d/trunk/
Homepage: http://www.bmsc.washington.edu/raster3d/raster3d.html
Modified: trunk/packages/raster3d/trunk/debian/copyright
===================================================================
--- trunk/packages/raster3d/trunk/debian/copyright 2012-03-07 08:06:17 UTC (rev 9909)
+++ trunk/packages/raster3d/trunk/debian/copyright 2012-03-07 08:08:43 UTC (rev 9910)
@@ -1,103 +1,102 @@
-Format-Specification: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=135
-Maintainer: Ethan Merritt <merritt at u.washington.edu>
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Raster3D
+Upstream-Contact: Ethan Merritt <merritt at u.washington.edu>
Source: http://skuld.bmsc.washington.edu/raster3d/raster3d.html
-Name: Raster3D
Files: *
-Copyright 1996-2011 © Ethan Merritt, David J. Bacon and Wayne F. Anderson
-License: Artistic License 2.0
-
- Copyright (c) 2000-2006, The Perl Foundation.
-
+Copyright: 1996-2011 Ethan Merritt, David J. Bacon and Wayne F. Anderson
+License: Artistic
+ Artistic License 2.0, Copyright (c) 2000-2006, The Perl Foundation.
+ .
Everyone is permitted to copy and distribute verbatim copies of this
license document, but changing it is not allowed.
-
+ .
Preamble
-
+ .
This license establishes the terms under which a given free software
Package may be copied, modified, distributed, and/or redistributed. The
intent is that the Copyright Holder maintains some artistic control
over the development of that Package while still keeping the Package
available as open source and free software.
-
+ .
You are always permitted to make arrangements wholly outside of this
license directly with the Copyright Holder of a given Package. If the
terms of this license do not permit the full use that you propose to
make of the Package, you should contact the Copyright Holder and seek a
different licensing arrangement.
-
+ .
Definitions
-
+ .
"Copyright Holder" means the individual(s) or organization(s) named in
the copyright notice for the entire Package.
-
+ .
"Contributor" means any party that has contributed code or other
material to the Package, in accordance with the Copyright Holder's
procedures.
-
+ .
"You" and "your" means any person who would like to copy, distribute,
or modify the Package.
-
+ .
"Package" means the collection of files distributed by the Copyright
Holder, and derivatives of that collection and/or of those files. A
given Package may consist of either the Standard Version, or a Modified
Version.
-
+ .
"Distribute" means providing a copy of the Package or making it
accessible to anyone else, or in the case of a company or organization,
to others outside of your company or organization.
-
+ .
"Distributor Fee" means any fee that you charge for Distributing this
Package or providing support for this Package to another party. It does
not mean licensing fees.
-
+ .
"Standard Version" refers to the Package if it has not been modified,
or has been modified only in ways explicitly requested by the Copyright
Holder.
-
+ .
"Modified Version" means the Package, if it has been changed, and such
changes were not explicitly requested by the Copyright Holder.
-
+ .
"Original License" means this Artistic License as Distributed with the
Standard Version of the Package, in its current version or as it may be
modified by The Perl Foundation in the future.
-
+ .
"Source" form means the source code, documentation source, and
configuration files for the Package.
-
+ .
"Compiled" form means the compiled bytecode, object code, binary, or
any other form resulting from mechanical transformation or translation
of the Source form.
-
+ .
Permission for Use and Modification Without Distribution
-
+ .
(1) You are permitted to use the Standard Version and create and use
Modified Versions for any purpose without restriction, provided that
you do not Distribute the Modified Version.
-
+ .
Permissions for Redistribution of the Standard Version
-
+ .
(2) You may Distribute verbatim copies of the Source form of the
Standard Version of this Package in any medium without restriction,
either gratis or for a Distributor Fee, provided that you duplicate all
of the original copyright notices and associated disclaimers. At your
discretion, such verbatim copies may or may not include a Compiled form
of the Package.
-
+ .
(3) You may apply any bug fixes, portability changes, and other
modifications made available from the Copyright Holder. The resulting
Package will still be considered the Standard Version, and as such will
be subject to the Original License.
-
+ .
Distribution of Modified Versions of the Package as Source
-
+ .
(4) You may Distribute your Modified Version as Source (either gratis
or for a Distributor Fee, and with or without a Compiled form of the
Modified Version) provided that you clearly document how it differs
from the Standard Version, including, but not limited to, documenting
any non-standard features, executables, or modules, and provided that
you do at least ONE of the following:
-
+ .
(a) make the Modified Version available to the Copyright Holder of the
Standard Version, under the Original License, so that the Copyright
Holder may include your modifications in the Standard Version.
@@ -116,7 +115,7 @@
Distributor Fees are allowed.
Distribution of Compiled Forms of the Standard Version or Modified
Versions without the Source
-
+ .
(5) You may Distribute Compiled forms of the Standard Version without
the Source, provided that you include complete instructions on how to
get the Source of the Standard Version. Such instructions must be valid
@@ -126,13 +125,13 @@
you provide valid instructions or cease distribution within thirty days
after you become aware that the instructions are invalid, then you do
not forfeit any of your rights under this license.
-
+ .
(6) You may Distribute a Modified Version in Compiled form without the
Source, provided that you comply with Section 4 with respect to the
Source of the Modified Version.
-
+ .
Aggregating or Linking the Package
-
+ .
(7) You may aggregate the Package (either the Standard Version or
Modified Version) with other packages and Distribute the resulting
aggregation provided that you do not charge a licensing fee for the
@@ -140,37 +139,37 @@
components in the aggregation are permitted. The terms of this license
apply to the use and Distribution of the Standard or Modified Versions
as included in the aggregation.
-
+ .
(8) You are permitted to link Modified and Standard Versions with other
works, to embed the Package in a larger work of your own, or to build
stand-alone binary or bytecode versions of applications that include
the Package, and Distribute the result without restriction, provided
the result does not expose a direct interface to the Package.
-
+ .
Items That are Not Considered Part of a Modified Version
-
+ .
(9) Works (including, but not limited to, modules and scripts) that
merely extend or make use of the Package, do not, by themselves, cause
the Package to be a Modified Version. In addition, such works are not
considered parts of the Package itself, and are not subject to the
terms of this license.
-
+ .
General Provisions
-
+ .
(10) Any use, modification, and distribution of the Standard or
Modified Versions is governed by this Artistic License. By using,
modifying or distributing the Package, you accept this license. Do not
use, modify, or distribute the Package, if you do not accept this
license.
-
+ .
(11) If your Modified Version has been derived from a Modified Version
made by someone other than you, you are nevertheless required to ensure
that your Modified Version complies with the requirements of this
license.
-
+ .
(12) This license does not grant you the right to use any trademark,
service mark, tradename, or logo of the Copyright Holder.
-
+ .
(13) This license includes the non-exclusive, worldwide, free-of-charge
patent license to make, have made, use, offer to sell, sell, import and
otherwise transfer the Package with respect to any patent claims
@@ -180,7 +179,7 @@
Package constitutes direct or contributory patent infringement, then
this Artistic License to you shall terminate on the date that such
litigation is filed.
-
+ .
(14) Disclaimer of Warranty: THE PACKAGE IS PROVIDED BY THE COPYRIGHT
HOLDER AND CONTRIBUTORS "AS IS' AND WITHOUT ANY EXPRESS OR IMPLIED
WARRANTIES. THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
@@ -196,14 +195,9 @@
The next upstream version will feature the license change also in the
source code.
-REFERENCES
-Bacon, D.J., & Anderson, W.F. (1988) ``A Fast Algorithm for
-Rendering Space-Filling Molecule Pictures''. (abstract of paper
-presented at the Seventh Annual Meeting of the Molecular Graphics
-Society). J. Molec. Graphics 6, 219-220.
-Kraulis, P.J. (1991) ``MOLSCRIPT: a program to produce both detailed
-and schematic plots of protein structures''. J. Appl. Cryst. 24, 946-950.
-Merritt, E.A. & Murphy, M.E.P. (1994) ``Raster3D Version 2.0 - A Program
-for Photorealistic Molecular Graphics''. Acta Cryst. D50, 869-873.
-Merritt, E.A. & Bacon, D.J. (1997) ``Raster3D Photorealistic Molecular
-Graphics''. Methods in Enzymology 277, 505-524.
+Files: debian/*
+Copyright: 2005-2008 Nelson A. de Oliveira <naoliv at gmail.com>
+ 2008-2012 Andreas Tille <tille at debian.org>
+License: Artistic
+ Same as program itself
+
Modified: trunk/packages/raster3d/trunk/debian/upstream
===================================================================
--- trunk/packages/raster3d/trunk/debian/upstream 2012-03-07 08:06:17 UTC (rev 9909)
+++ trunk/packages/raster3d/trunk/debian/upstream 2012-03-07 08:08:43 UTC (rev 9910)
@@ -1,11 +1,13 @@
Homepage: http://skuld.bmsc.washington.edu/raster3d/
Name: Raster3D
-Reference-PMID: 18488322
Reference:
Article: MerrittBacon1997
Author: Merritt, E.A. and Bacon, D.J.
Title: Raster3D Photorealistic Molecular Graphics
Journal: Methods in Enzymology
+ PMID: 18488322
+ DOI: 10.1016/S0076-6879(97)77028-9
Volume: 277
Pages: 505-524
Year: 1997
+ URL: http://www.sciencedirect.com/science/article/pii/S0076687997770289
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