[med-svn] [SCM] r-bioc-edger branch, meta, updated. meta/2.4.3_dfsg-1-1-ga45bdef
Charles Plessy
plessy at debian.org
Sat Mar 17 07:32:23 UTC 2012
The following commit has been merged in the meta branch:
commit a45bdefe12f05f915c5ee93304e0a269b1f5f716
Author: Charles Plessy <plessy at debian.org>
Date: Sat Mar 17 16:30:54 2012 +0900
r-bioc-edger (2.4.6~dfsg-1) unstable; urgency=low
diff --git a/amd64.changes b/amd64.changes
index 6134d5e..3f24c8e 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,11 +2,11 @@
Hash: SHA256
Format: 1.8
-Date: Mon, 05 Mar 2012 15:10:28 +0900
+Date: Sat, 17 Mar 2012 16:18:52 +0900
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: source all
-Version: 2.4.3~dfsg-1
+Version: 2.4.6~dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -14,45 +14,39 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
Changes:
- r-bioc-edger (2.4.3~dfsg-1) unstable; urgency=low
+ r-bioc-edger (2.4.6~dfsg-1) unstable; urgency=low
.
- 04cc8b8 New upstream 2.4.3.
- c494484 Renamed debian/upstream-metadata.yaml to debian/upstream.
- 27bae62 Corrected URLs, paths, and mangles in watch file.
- d6029fb Provide a more stable URL to the manual.
- 09acea4 Obtain ${R:Depends} directly throuhg r-base-dev.
- 5df05c4 Conforms to Policy 3.9.3.
- 2b01b4a Verbose Debhelper.
+ 181300f New upstream version 2.4.6.
Checksums-Sha1:
- 7147330da5f4ed0095b289131a19e29b5ad12bf5 2081 r-bioc-edger_2.4.3~dfsg-1.dsc
- e1ecd1dc7e041f87b7f3e8839b0f4ef7d263df42 401057 r-bioc-edger_2.4.3~dfsg.orig.tar.gz
- 8783839cafece97982f54ebd91412799c2720df2 3057 r-bioc-edger_2.4.3~dfsg-1.diff.gz
- 3b84ce146f85549c990324306a1cb624e9fe4492 545386 r-bioc-edger_2.4.3~dfsg-1_all.deb
+ 92154ecdebaf1388e7a9034b1cebb74520ab8af1 2081 r-bioc-edger_2.4.6~dfsg-1.dsc
+ 0d3b1b5be6581d07bae68e719a222a5073f32992 404681 r-bioc-edger_2.4.6~dfsg.orig.tar.gz
+ 92d26ddbad12bc2e498a24a064211217bd3ca7e5 3092 r-bioc-edger_2.4.6~dfsg-1.diff.gz
+ 1e14c70f087d6299e6e99e0eb1e963e92da97eff 545890 r-bioc-edger_2.4.6~dfsg-1_all.deb
Checksums-Sha256:
- 964e2018a05ffdcab95ae72275413b2f7f74b12627f58179a9ed3b3ea929e604 2081 r-bioc-edger_2.4.3~dfsg-1.dsc
- a0bf6e486a09d95bb310df6ae45648b617f89866a04a68267c0e805b970855ef 401057 r-bioc-edger_2.4.3~dfsg.orig.tar.gz
- 4096fc107e01494fa9942849a8077a1279312b123530ef04841ddb4026f01b31 3057 r-bioc-edger_2.4.3~dfsg-1.diff.gz
- 1f3dd397ce30784f39e797f97faf890753edbbeb683dd2ac857fb45ae6ea1742 545386 r-bioc-edger_2.4.3~dfsg-1_all.deb
+ 4fcbf973541ed50395e3f26be72fed10718fae40dd0602372d3d2d917b63815f 2081 r-bioc-edger_2.4.6~dfsg-1.dsc
+ a86418b1d4d9e56c670d14263f417e1c160235672c77c4209920a96b48c1833f 404681 r-bioc-edger_2.4.6~dfsg.orig.tar.gz
+ d9115e6690def161994667435dfea7c2e5e9a4ef0afa830618149622a2b9b287 3092 r-bioc-edger_2.4.6~dfsg-1.diff.gz
+ e071e3c3ad2419dc15d1108f0b2f9bfc553d711093f20e2ef22465526e95809f 545890 r-bioc-edger_2.4.6~dfsg-1_all.deb
Files:
- 2c0e2d07b23b45fdbea1a76c33a96735 2081 gnu-r optional r-bioc-edger_2.4.3~dfsg-1.dsc
- 64e7be8d28c5395539f19a912d536c7c 401057 gnu-r optional r-bioc-edger_2.4.3~dfsg.orig.tar.gz
- 3f14d6575d27c4b84d4af286d9018736 3057 gnu-r optional r-bioc-edger_2.4.3~dfsg-1.diff.gz
- 2295d2d1d1530ef4f6f5a63e08f27b00 545386 gnu-r optional r-bioc-edger_2.4.3~dfsg-1_all.deb
+ 693065bb1bf0a4b2bbc8dde45882ce49 2081 gnu-r optional r-bioc-edger_2.4.6~dfsg-1.dsc
+ fe26abce649858a920605ee696519a45 404681 gnu-r optional r-bioc-edger_2.4.6~dfsg.orig.tar.gz
+ e3d2f61ada0b0c349f0164209b655378 3092 gnu-r optional r-bioc-edger_2.4.6~dfsg-1.diff.gz
+ e4ac91c0e3390975ed77b1e4a4356bb0 545890 gnu-r optional r-bioc-edger_2.4.6~dfsg-1_all.deb
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diff --git a/amd64.log b/amd64.log
index 66c4823..40f911d 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,27 +1,30 @@
-sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on anx191
+sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on aqwa.igloo
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-edger 2.4.3~dfsg-1 (amd64) 05 Mar 2012 15:12 ║
+║ r-bioc-edger 2.4.6~dfsg-1 (amd64) 17 mars 2012 16:24 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-edger
-Version: 2.4.3~dfsg-1
-Source Version: 2.4.3~dfsg-1
+Version: 2.4.6~dfsg-1
+Source Version: 2.4.6~dfsg-1
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/r-bioc-edger-eKzS5D/r-bioc-edger-2.4.3~dfsg' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/r-bioc-edger-eKzS5D' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-6a048ffc-cecd-4251-8870-6edc837a4030' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-edger-tlHs0E/r-bioc-edger-2.4.6~dfsg' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-edger-tlHs0E' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-950a9d5d-2589-45a7-b876-53a9c32f35b4' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
-Hit http://ftp.jp.debian.org sid InRelease
-Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
-Hit http://ftp.jp.debian.org sid/main TranslationIndex
-Hit http://ftp.jp.debian.org sid/main Translation-en
+Hit ftp://ftp.jp.debian.org sid InRelease
+Get:1 ftp://ftp.jp.debian.org sid/main Sources/DiffIndex [7876 B]
+Get:2 ftp://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex [7876 B]
+Hit ftp://ftp.jp.debian.org sid/main TranslationIndex
+Hit ftp://ftp.jp.debian.org sid/main Translation-en
+Hit ftp://ftp.jp.debian.org sid/main Translation-fr
+Fetched 15.8 kB in 1s (8308 B/s)
Reading package lists...
Reading package lists...
Building dependency tree...
@@ -36,14 +39,14 @@ Reading state information...
Local sources
─────────────
-r-bioc-edger_2.4.3~dfsg-1.dsc exists in .; copying to chroot
+r-bioc-edger_2.4.6~dfsg-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-ZjWwS5/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Be4tOv/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -55,11 +58,19 @@ Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
-sbuild-build-depends-core-dummy is already the newest version.
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+The following NEW packages will be installed:
+ sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/714 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 10880 files and directories currently installed.)
+Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222), r-bioc-limma
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222), r-bioc-limma
-dpkg-deb: building package `sbuild-build-depends-r-bioc-edger-dummy' in `/«BUILDDIR»/resolver-HElqF6/apt_archive/sbuild-build-depends-r-bioc-edger-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-r-bioc-edger-dummy' in `/«BUILDDIR»/resolver-7j6TGB/apt_archive/sbuild-build-depends-r-bioc-edger-dummy.deb'.
OK
Reading package lists...
@@ -72,105 +83,102 @@ Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
- libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
- libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
- r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common
- xdg-utils zip zlib1g-dev
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core
+ unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html texlive-base texlive-latex-base
- texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
- texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
- texi2html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
- x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
- libx11-protocol-perl x11-utils x11-xserver-utils
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator
+ libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
+ x11-xserver-utils
The following NEW packages will be installed:
- cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libffi5 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
- libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
- libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
- r-base-dev r-bioc-limma sbuild-build-depends-r-bioc-edger-dummy tcl8.5 tk8.5
- ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 38.4 MB/59.8 MB of archives.
-After this operation, 128 MB of additional disk space will be used.
-Get:1 http://ftp.jp.debian.org/debian/ sid/main libpipeline1 amd64 1.2.1-1 [39.2 kB]
-Get:2 http://ftp.jp.debian.org/debian/ sid/main libmagic1 amd64 5.10-1 [248 kB]
-Get:3 http://ftp.jp.debian.org/debian/ sid/main libglib2.0-0 amd64 2.30.2-6 [1846 kB]
-Get:4 http://ftp.jp.debian.org/debian/ sid/main libxml2 amd64 2.7.8.dfsg-7 [895 kB]
-Get:5 http://ftp.jp.debian.org/debian/ sid/main libcroco3 amd64 0.6.4-2 [150 kB]
-Get:6 http://ftp.jp.debian.org/debian/ sid/main libdatrie1 amd64 0.2.5-3 [28.6 kB]
-Get:7 http://ftp.jp.debian.org/debian/ sid/main fontconfig-config all 2.8.0-3.1 [219 kB]
-Get:8 http://ftp.jp.debian.org/debian/ sid/main libfontconfig1 amd64 2.8.0-3.1 [283 kB]
-Get:9 http://ftp.jp.debian.org/debian/ sid/main libgfortran3 amd64 4.6.3-1 [358 kB]
-Get:10 http://ftp.jp.debian.org/debian/ sid/main x11-common all 1:7.6+12 [283 kB]
-Get:11 http://ftp.jp.debian.org/debian/ sid/main libjpeg8 amd64 8d-1 [134 kB]
-Get:12 http://ftp.jp.debian.org/debian/ sid/main libpixman-1-0 amd64 0.24.4-1 [406 kB]
-Get:13 http://ftp.jp.debian.org/debian/ sid/main libxcb1 amd64 1.8-2 [49.7 kB]
-Get:14 http://ftp.jp.debian.org/debian/ sid/main libxcb-render0 amd64 1.8-2 [18.3 kB]
-Get:15 http://ftp.jp.debian.org/debian/ sid/main libxcb-shm0 amd64 1.8-2 [10.0 kB]
-Get:16 http://ftp.jp.debian.org/debian/ sid/main libcairo2 amd64 1.10.2-6.2 [933 kB]
-Get:17 http://ftp.jp.debian.org/debian/ sid/main libthai-data all 0.1.17-1 [205 kB]
-Get:18 http://ftp.jp.debian.org/debian/ sid/main libthai0 amd64 0.1.17-1 [44.8 kB]
-Get:19 http://ftp.jp.debian.org/debian/ sid/main fontconfig amd64 2.8.0-3.1 [335 kB]
-Get:20 http://ftp.jp.debian.org/debian/ sid/main libtiff4 amd64 3.9.6-1 [199 kB]
-Get:21 http://ftp.jp.debian.org/debian/ sid/main man-db amd64 2.6.1-1 [1057 kB]
-Get:22 http://ftp.jp.debian.org/debian/ sid/main file amd64 5.10-1 [53.0 kB]
-Get:23 http://ftp.jp.debian.org/debian/ sid/main cdbs all 0.4.105 [78.7 kB]
-Get:24 http://ftp.jp.debian.org/debian/ sid/main debhelper all 9.20120115 [693 kB]
-Get:25 http://ftp.jp.debian.org/debian/ sid/main dpatch all 2.0.35 [95.2 kB]
-Get:26 http://ftp.jp.debian.org/debian/ sid/main gfortran-4.6 amd64 4.6.3-1 [5564 kB]
-Get:27 http://ftp.jp.debian.org/debian/ sid/main gfortran amd64 4:4.6.2-4 [1130 B]
-Get:28 http://ftp.jp.debian.org/debian/ sid/main libbz2-dev amd64 1.0.6-1 [32.1 kB]
-Get:29 http://ftp.jp.debian.org/debian/ sid/main libjpeg8-dev amd64 8d-1 [242 kB]
-Get:30 http://ftp.jp.debian.org/debian/ sid/main zlib1g-dev amd64 1:1.2.6.dfsg-2 [213 kB]
-Get:31 http://ftp.jp.debian.org/debian/ sid/main libpng12-dev amd64 1.2.47-1 [267 kB]
-Get:32 http://ftp.jp.debian.org/debian/ sid/main libreadline6-dev amd64 6.2-8 [264 kB]
-Get:33 http://ftp.jp.debian.org/debian/ sid/main libreadline-dev amd64 6.2-8 [890 B]
-Get:34 http://ftp.jp.debian.org/debian/ sid/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
-Get:35 http://ftp.jp.debian.org/debian/ sid/main tcl8.5 amd64 8.5.11-1 [1633 kB]
-Get:36 http://ftp.jp.debian.org/debian/ sid/main tk8.5 amd64 8.5.11-1 [1183 kB]
-Get:37 http://ftp.jp.debian.org/debian/ sid/main r-base-core amd64 2.14.2-1 [20.2 MB]
-Get:38 http://ftp.jp.debian.org/debian/ sid/main r-base-dev all 2.14.2-1 [3894 B]
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev r-bioc-limma
+ sbuild-build-depends-r-bioc-edger-dummy tcl8.5 tk8.5 ttf-dejavu-core unzip
+ x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
+Need to get 41.2 MB/60.2 MB of archives.
+After this operation, 129 MB of additional disk space will be used.
+Get:1 ftp://ftp.jp.debian.org/debian/ sid/main libpipeline1 amd64 1.2.1-1 [39.2 kB]
+Get:2 ftp://ftp.jp.debian.org/debian/ sid/main libmagic1 amd64 5.10-1 [248 kB]
+Get:3 ftp://ftp.jp.debian.org/debian/ sid/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:4 ftp://ftp.jp.debian.org/debian/ sid/main libfontconfig1 amd64 2.8.0-3.1 [283 kB]
+Get:5 ftp://ftp.jp.debian.org/debian/ sid/main libpixman-1-0 amd64 0.24.4-1 [406 kB]
+Get:6 ftp://ftp.jp.debian.org/debian/ sid/main libpng12-0 amd64 1.2.47-1 [190 kB]
+Get:7 ftp://ftp.jp.debian.org/debian/ sid/main libxcb1 amd64 1.8.1-1 [50.0 kB]
+Get:8 ftp://ftp.jp.debian.org/debian/ sid/main libxcb-render0 amd64 1.8.1-1 [18.4 kB]
+Get:9 ftp://ftp.jp.debian.org/debian/ sid/main libxcb-shm0 amd64 1.8.1-1 [10.1 kB]
+Get:10 ftp://ftp.jp.debian.org/debian/ sid/main libcairo2 amd64 1.10.2-7 [933 kB]
+Get:11 ftp://ftp.jp.debian.org/debian/ sid/main libglib2.0-0 amd64 2.30.2-6 [1846 kB]
+Get:12 ftp://ftp.jp.debian.org/debian/ sid/main libxml2 amd64 2.7.8.dfsg-7 [895 kB]
+Get:13 ftp://ftp.jp.debian.org/debian/ sid/main libcroco3 amd64 0.6.4-2 [150 kB]
+Get:14 ftp://ftp.jp.debian.org/debian/ sid/main libdatrie1 amd64 0.2.5-3 [28.6 kB]
+Get:15 ftp://ftp.jp.debian.org/debian/ sid/main libgfortran3 amd64 4.6.3-1 [358 kB]
+Get:16 ftp://ftp.jp.debian.org/debian/ sid/main x11-common all 1:7.6+12 [283 kB]
+Get:17 ftp://ftp.jp.debian.org/debian/ sid/main libjpeg8 amd64 8d-1 [134 kB]
+Get:18 ftp://ftp.jp.debian.org/debian/ sid/main libthai-data all 0.1.17-1 [205 kB]
+Get:19 ftp://ftp.jp.debian.org/debian/ sid/main libthai0 amd64 0.1.17-1 [44.8 kB]
+Get:20 ftp://ftp.jp.debian.org/debian/ sid/main fontconfig amd64 2.8.0-3.1 [335 kB]
+Get:21 ftp://ftp.jp.debian.org/debian/ sid/main libpango1.0-0 amd64 1.29.4-3 [456 kB]
+Get:22 ftp://ftp.jp.debian.org/debian/ sid/main libtiff4 amd64 3.9.6-1 [199 kB]
+Get:23 ftp://ftp.jp.debian.org/debian/ sid/main bsdmainutils amd64 9.0.1 [210 kB]
+Get:24 ftp://ftp.jp.debian.org/debian/ sid/main man-db amd64 2.6.1-1 [1057 kB]
+Get:25 ftp://ftp.jp.debian.org/debian/ sid/main file amd64 5.10-1 [53.0 kB]
+Get:26 ftp://ftp.jp.debian.org/debian/ sid/main cdbs all 0.4.109 [79.4 kB]
+Get:27 ftp://ftp.jp.debian.org/debian/ sid/main debhelper all 9.20120312 [694 kB]
+Get:28 ftp://ftp.jp.debian.org/debian/ sid/main dpatch all 2.0.35 [95.2 kB]
+Get:29 ftp://ftp.jp.debian.org/debian/ sid/main gfortran-4.6 amd64 4.6.3-1 [5564 kB]
+Get:30 ftp://ftp.jp.debian.org/debian/ sid/main gfortran amd64 4:4.6.2-4 [1130 B]
+Get:31 ftp://ftp.jp.debian.org/debian/ sid/main libbz2-dev amd64 1.0.6-1 [32.1 kB]
+Get:32 ftp://ftp.jp.debian.org/debian/ sid/main libjpeg8-dev amd64 8d-1 [242 kB]
+Get:33 ftp://ftp.jp.debian.org/debian/ sid/main libtinfo-dev amd64 5.9-4 [103 kB]
+Get:34 ftp://ftp.jp.debian.org/debian/ sid/main libncurses5-dev amd64 5.9-4 [406 kB]
+Get:35 ftp://ftp.jp.debian.org/debian/ sid/main zlib1g-dev amd64 1:1.2.6.dfsg-2 [213 kB]
+Get:36 ftp://ftp.jp.debian.org/debian/ sid/main libpng12-dev amd64 1.2.47-1 [267 kB]
+Get:37 ftp://ftp.jp.debian.org/debian/ sid/main libreadline6-dev amd64 6.2-8 [264 kB]
+Get:38 ftp://ftp.jp.debian.org/debian/ sid/main libreadline-dev amd64 6.2-8 [890 B]
+Get:39 ftp://ftp.jp.debian.org/debian/ sid/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:40 ftp://ftp.jp.debian.org/debian/ sid/main tcl8.5 amd64 8.5.11-1 [1633 kB]
+Get:41 ftp://ftp.jp.debian.org/debian/ sid/main tk8.5 amd64 8.5.11-1 [1183 kB]
+Get:42 ftp://ftp.jp.debian.org/debian/ sid/main r-base-core amd64 2.14.2-3 [20.2 MB]
+Get:43 ftp://ftp.jp.debian.org/debian/ sid/main r-base-dev all 2.14.2-3 [3892 B]
+Get:44 ftp://ftp.jp.debian.org/debian/ sid/main r-bioc-limma amd64 3.10.3-1 [1473 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 38.4 MB in 6s (6076 kB/s)
+Fetched 41.2 MB in 33s (1241 kB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 10886 files and directories currently installed.)
+(Reading database ... 10880 files and directories currently installed.)
Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_amd64.deb) ...
Selecting previously unselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.10-1_amd64.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3_amd64.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_amd64.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_amd64.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.4-2_amd64.deb) ...
-Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_amd64.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_amd64.deb) ...
Selecting previously unselected package libfreetype6.
@@ -181,34 +189,46 @@ Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_amd64.deb) ...
-Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_amd64.deb) ...
-Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
-Selecting previously unselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-2_amd64.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8d-1_amd64.deb) ...
Selecting previously unselected package libpixman-1-0.
Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_amd64.deb) ...
+Selecting previously unselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.47-1_amd64.deb) ...
Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_amd64.deb) ...
Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_amd64.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.8-2_amd64.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8.1-1_amd64.deb) ...
Selecting previously unselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_amd64.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_amd64.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8.1-1_amd64.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_amd64.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8.1-1_amd64.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_amd64.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.2_amd64.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-7_amd64.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_amd64.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_amd64.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_amd64.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_amd64.deb) ...
+Selecting previously unselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_amd64.deb) ...
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_amd64.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_amd64.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_amd64.deb) ...
Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
@@ -218,7 +238,7 @@ Unpacking libxft2 (from .../libxft2_2.2.0-3_amd64.deb) ...
Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_amd64.deb) ...
Selecting previously unselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_amd64.deb) ...
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-3_amd64.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_amd64.deb) ...
Selecting previously unselected package libsm6.
@@ -233,6 +253,8 @@ Selecting previously unselected package libxss1.
Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_amd64.deb) ...
Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_amd64.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_amd64.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
Selecting previously unselected package man-db.
@@ -242,7 +264,7 @@ Unpacking file (from .../archives/file_5.10-1_amd64.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.109_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
Selecting previously unselected package gettext.
@@ -252,7 +274,7 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120312_all.deb) ...
Selecting previously unselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
@@ -300,50 +322,51 @@ Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_amd64.deb) ...
Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.11-1_amd64.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.2-1_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-3_amd64.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-3_all.deb) ...
Selecting previously unselected package r-bioc-limma.
-Unpacking r-bioc-limma (from .../r-bioc-limma_3.10.0-1_amd64.deb) ...
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.10.3-1_amd64.deb) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-edger-dummy.
Unpacking sbuild-build-depends-r-bioc-edger-dummy (from .../sbuild-build-depends-r-bioc-edger-dummy.deb) ...
Setting up libpipeline1 (1.2.1-1) ...
Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.8-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
+Setting up libpng12-0 (1.2.47-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.8.1-1) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.8.1-1) ...
+Setting up libxcb-shm0 (1.8.1-1) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-7) ...
Setting up libffi5 (3.0.10-3) ...
Setting up libglib2.0-0 (2.30.2-6) ...
No schema files found: doing nothing.
Setting up libxml2 (2.7.8.dfsg-7) ...
Setting up libcroco3 (0.6.4-2) ...
Setting up libdatrie1 (0.2.5-3) ...
-Setting up libexpat1 (2.0.1-7.2) ...
-Setting up libfreetype6 (2.4.8-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3.1) ...
-Setting up libfontconfig1 (2.8.0-3.1) ...
Setting up libgfortran3 (4.6.3-1) ...
Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
Setting up libjpeg8 (8d-1) ...
-Setting up libpixman-1-0 (0.24.4-1) ...
-Setting up libxau6 (1:1.0.6-4) ...
-Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.8-2) ...
-Setting up libx11-data (2:1.4.4-4) ...
-Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.8-2) ...
-Setting up libxcb-shm0 (1.8-2) ...
-Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.2) ...
Setting up libthai-data (0.1.17-1) ...
Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpango1.0-0 (1.29.4-3) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
Setting up libtiff4 (3.9.6-1) ...
@@ -351,17 +374,20 @@ Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (9.0.1) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.105) ...
+Setting up cdbs (0.4.109) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120115) ...
+Setting up debhelper (9.20120312) ...
Setting up dpatch (2.0.35) ...
Setting up gfortran-4.6 (4.6.3-1) ...
Setting up gfortran (4:4.6.2-4) ...
@@ -394,21 +420,21 @@ Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.2-1) ...
+Setting up r-base-core (2.14.2-3) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.2-1) ...
-Setting up r-bioc-limma (3.10.0-1) ...
+Setting up r-base-dev (2.14.2-3) ...
+Setting up r-bioc-limma (3.10.3-1) ...
Setting up sbuild-build-depends-r-bioc-edger-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
-Kernel: Linux 2.6.39-bpo.2-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.7-1
-Package versions: apt_0.8.15.9 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-3 gpgv_1.4.12-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.10.2-6.2 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libgpm2_1.20.4-4 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libpod-plainer-perl_1.03-1 libquadmath0_4.6.3-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.7-1 login_1:4.1.5-1 lsb-base_3.2+Debian29 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 r-bioc-limma_3.10.0-1 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-edger-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Kernel: Linux 3.2.0-1-amd64 amd64 (x86_64)
+Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.10-1
+Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.109 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.42 debconf-i18n_1.5.42 debfoster_2.7-1.1 debhelper_9.20120312 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-6 gzip_1.4-3 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.10.2-7 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb4.7_4.7.25-20 libdb4.8_4.8.30-11 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgmp3c2_2:4.3.2+dfsg-2 libgomp1_4.6.3-1 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7+b1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-3 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libpod-plainer-perl_1.03-1 libquadmath0_4.6.3-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-7 libsm6_2:1.2.0-2 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.10-1 login_1:4.1.5-1 lsb-base_3.2+Debian31 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-3 r-base-dev_2.14.2-3 r-bioc-limma_3.10.3-1 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-edger-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2012b-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -418,10 +444,10 @@ Package versions: apt_0.8.15.9 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-edger_2.4.3~dfsg-1.dsc)
-dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-2.4.3~dfsg
-dpkg-source: info: unpacking r-bioc-edger_2.4.3~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-edger_2.4.3~dfsg-1.diff.gz
+dpkg-source: warning: extracting unsigned source package (r-bioc-edger_2.4.6~dfsg-1.dsc)
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-2.4.6~dfsg
+dpkg-source: info: unpacking r-bioc-edger_2.4.6~dfsg.orig.tar.gz
+dpkg-source: info: applying r-bioc-edger_2.4.6~dfsg-1.diff.gz
Check disc space
────────────────
@@ -438,8 +464,8 @@ SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=sid-amd64-sbuild-6a048ffc-cecd-4251-8870-6edc837a4030
-SCHROOT_UID=31051
+SCHROOT_SESSION_ID=sid-amd64-sbuild-950a9d5d-2589-45a7-b876-53a9c32f35b4
+SCHROOT_UID=1000
SCHROOT_USER=charles
SHELL=/bin/sh
TERM=xterm
@@ -450,9 +476,9 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-edger
-dpkg-buildpackage: source version 2.4.3~dfsg-1
+dpkg-buildpackage: source version 2.4.6~dfsg-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build r-bioc-edger-2.4.3~dfsg
+ dpkg-source --before-build r-bioc-edger-2.4.6~dfsg
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -491,12 +517,12 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-edger-2.4.3~dfsg
+ dpkg-source -b r-bioc-edger-2.4.6~dfsg
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-edger using existing r-bioc-edger_2.4.3~dfsg.orig.tar.gz
-dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.4.3~dfsg-1.diff.gz
-dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.4.3~dfsg-1.dsc
+dpkg-source: info: building r-bioc-edger using existing r-bioc-edger_2.4.6~dfsg.orig.tar.gz
+dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.4.6~dfsg-1.diff.gz
+dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.4.6~dfsg-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -531,7 +557,7 @@ mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
install -d debian/r-bioc-edger/usr/lib/R/site-library
-echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-edger.substvars
+echo "R:Depends=r-base-core (>= 2.14.2-3)" >> debian/r-bioc-edger.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library --clean \
@@ -600,8 +626,8 @@ dh_installgsettings -pr-bioc-edger
dh_strip -pr-bioc-edger
dh_compress -pr-bioc-edger
cd debian/r-bioc-edger
- chmod a-x usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/NEWS usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
- gzip -9nf usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/NEWS usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ chmod a-x usr/share/doc/r-bioc-edger/NEWS usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
+ gzip -9nf usr/share/doc/r-bioc-edger/NEWS usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save usr/share/doc/r-bioc-edger/changelog.Debian
cd '/«PKGBUILDDIR»'
dh_fixperms -pr-bioc-edger
find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
@@ -631,13 +657,13 @@ dh_md5sums -pr-bioc-edger
chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
dh_builddeb -pr-bioc-edger -- -Z xz
dpkg-deb -Z xz --build debian/r-bioc-edger ..
-dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_2.4.3~dfsg-1_all.deb'.
- dpkg-genchanges >../r-bioc-edger_2.4.3~dfsg-1_amd64.changes
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_2.4.6~dfsg-1_all.deb'.
+ dpkg-genchanges >../r-bioc-edger_2.4.6~dfsg-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build r-bioc-edger-2.4.3~dfsg
+ dpkg-source --after-build r-bioc-edger-2.4.6~dfsg
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120305-1513
+Build finished at 20120317-1625
Finished
────────
@@ -649,15 +675,15 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-edger_2.4.3~dfsg-1_amd64.changes:
+r-bioc-edger_2.4.6~dfsg-1_amd64.changes:
────────────────────────────────────────
Format: 1.8
-Date: Mon, 05 Mar 2012 15:10:28 +0900
+Date: Sat, 17 Mar 2012 16:18:52 +0900
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: source all
-Version: 2.4.3~dfsg-1
+Version: 2.4.6~dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -665,50 +691,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
Changes:
- r-bioc-edger (2.4.3~dfsg-1) unstable; urgency=low
+ r-bioc-edger (2.4.6~dfsg-1) unstable; urgency=low
.
- 04cc8b8 New upstream 2.4.3.
- c494484 Renamed debian/upstream-metadata.yaml to debian/upstream.
- 27bae62 Corrected URLs, paths, and mangles in watch file.
- d6029fb Provide a more stable URL to the manual.
- 09acea4 Obtain ${R:Depends} directly throuhg r-base-dev.
- 5df05c4 Conforms to Policy 3.9.3.
- 2b01b4a Verbose Debhelper.
+ 181300f New upstream version 2.4.6.
Checksums-Sha1:
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- e1ecd1dc7e041f87b7f3e8839b0f4ef7d263df42 401057 r-bioc-edger_2.4.3~dfsg.orig.tar.gz
- 8783839cafece97982f54ebd91412799c2720df2 3057 r-bioc-edger_2.4.3~dfsg-1.diff.gz
- 3b84ce146f85549c990324306a1cb624e9fe4492 545386 r-bioc-edger_2.4.3~dfsg-1_all.deb
+ ca080d6fa376bf67d7525a32eb1158913e433302 1195 r-bioc-edger_2.4.6~dfsg-1.dsc
+ 0d3b1b5be6581d07bae68e719a222a5073f32992 404681 r-bioc-edger_2.4.6~dfsg.orig.tar.gz
+ 92d26ddbad12bc2e498a24a064211217bd3ca7e5 3092 r-bioc-edger_2.4.6~dfsg-1.diff.gz
+ 1e14c70f087d6299e6e99e0eb1e963e92da97eff 545890 r-bioc-edger_2.4.6~dfsg-1_all.deb
Checksums-Sha256:
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-edger_2.4.3~dfsg-1_all.deb
+r-bioc-edger_2.4.6~dfsg-1_all.deb
─────────────────────────────────
new debian package, version 2.0.
- size 545386 bytes: control archive= 1765 bytes.
+ size 545890 bytes: control archive= 1766 bytes.
814 bytes, 18 lines control
2831 bytes, 37 lines md5sums
Package: r-bioc-edger
- Version: 2.4.3~dfsg-1
+ Version: 2.4.6~dfsg-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1543
+ Installed-Size: 1541
Pre-Depends: dpkg (>= 1.15.6)
- Depends: r-base-core (>= 2.14.2-1), r-bioc-limma
+ Depends: r-base-core (>= 2.14.2-3), r-bioc-limma
Suggests: r-cran-mass
Section: gnu-r
Priority: optional
@@ -721,59 +741,59 @@ r-bioc-edger_2.4.3~dfsg-1_all.deb
distribution. It is also useful for differential signal analysis with
other types of genome-scale count data.
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--rw-r--r-- root/root 383 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/R/edgeR
--rw-r--r-- root/root 2105 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
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--rw-r--r-- root/root 3219 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/AnIndex
--rw-r--r-- root/root 197950 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
--rw-r--r-- root/root 1195 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/aliases.rds
--rw-r--r-- root/root 741 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/paths.rds
--rw-r--r-- root/root 1668 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
--rw-r--r-- root/root 3745 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/NEWS
--rw-r--r-- root/root 1588 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/CITATION
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--rw-r--r-- root/root 19 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/data/datalist
--rw-r--r-- root/root 318545 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
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--rw-r--r-- root/root 566 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/NAMESPACE
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--rw-r--r-- root/root 19776 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/html/00Index.html
--rw-r--r-- root/root 1179 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/html/R.css
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--rw-r--r-- root/root 192 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
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--rw-r--r-- root/root 6503 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/INDEX
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+-rw-r--r-- root/root 1179 2012-03-17 16:25 ./usr/lib/R/site-library/edgeR/html/R.css
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+-rw-r--r-- root/root 1588 2012-03-17 16:25 ./usr/lib/R/site-library/edgeR/CITATION
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+drwxr-xr-x root/root 0 2012-03-17 16:25 ./usr/share/doc/
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-rw-r--r-- root/root 1563 2012-01-11 11:22 ./usr/share/doc/r-bioc-edger/NEWS.gz
--rw-r--r-- root/root 717 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/README.test
--rw-r--r-- root/root 1281 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/copyright
-drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/tests/
--rw-r--r-- root/root 5448 2011-11-01 08:30 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 717 2012-03-17 16:25 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 274 2012-03-17 16:25 ./usr/share/doc/r-bioc-edger/README.Debian
+drwxr-xr-x root/root 0 2012-03-17 16:25 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5315 2012-03-03 11:22 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
-rw-r--r-- root/root 2456 2011-11-01 08:30 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R
--rw-r--r-- root/root 699 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
--rw-r--r-- root/root 274 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 1281 2012-03-17 16:25 ./usr/share/doc/r-bioc-edger/copyright
+-rw-r--r-- root/root 735 2012-03-17 16:25 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -784,8 +804,6 @@ drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/tes
lintian
───────
-Subroutine IO::Socket::INET6::sockaddr_in6 redefined at /usr/share/perl/5.14/Exporter.pm line 67.
- at /usr/share/perl5/IO/Socket/INET6.pm line 21
I: r-bioc-edger source: missing-debian-source-format
P: r-bioc-edger: no-upstream-changelog
W: r-bioc-edger: copyright-without-copyright-notice
@@ -805,18 +823,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 4408
-Build-Time: 9
+Build-Space: 4460
+Build-Time: 16
Distribution: unstable
-Install-Time: 19
-Job: r-bioc-edger_2.4.3~dfsg-1.dsc
+Install-Time: 50
+Job: r-bioc-edger_2.4.6~dfsg-1.dsc
Lintian: pass
Package: r-bioc-edger
-Package-Time: 31
-Source-Version: 2.4.3~dfsg-1
-Space: 4408
+Package-Time: 73
+Source-Version: 2.4.6~dfsg-1
+Space: 4460
Status: successful
-Version: 2.4.3~dfsg-1
+Version: 2.4.6~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120305-1513
-Build needed 00:00:31, 4408k disc space
+Finished at 20120317-1625
+Build needed 00:01:13, 4460k disc space
diff --git a/dsc b/dsc
index 0db1b18..e3018f1 100644
--- a/dsc
+++ b/dsc
@@ -5,7 +5,7 @@ Format: 1.0
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: all
-Version: 2.4.3~dfsg-1
+Version: 2.4.6~dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>
Dm-Upload-Allowed: yes
@@ -17,29 +17,29 @@ Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222), r-bioc-l
Package-List:
r-bioc-edger deb gnu-r optional
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diff --git a/upload b/upload
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+++ b/upload
@@ -1,6 +1,6 @@
-u r-bioc-edger_2.4.3~dfsg-1.dsc ftp.upload.debian.org Mon Mar 5 15:51:07 2012
-u r-bioc-edger_2.4.3~dfsg-1_all.deb ftp.upload.debian.org Mon Mar 5 15:51:10 2012
-u r-bioc-edger_2.4.3~dfsg-1.diff.gz ftp.upload.debian.org Mon Mar 5 15:51:11 2012
-u r-bioc-edger_2.4.3~dfsg.orig.tar.gz ftp.upload.debian.org Mon Mar 5 15:51:13 2012
-u r-bioc-edger_2.4.3~dfsg-1_amd64.changes ftp.upload.debian.org Mon Mar 5 15:51:14 2012
-s r-bioc-edger_2.4.3~dfsg-1_amd64.changes ftp.upload.debian.org Mon Mar 5 15:51:14 2012
+u r-bioc-edger_2.4.6~dfsg-1.dsc ftp.upload.debian.org Sat Mar 17 16:29:46 2012
+u r-bioc-edger_2.4.6~dfsg-1_all.deb ftp.upload.debian.org Sat Mar 17 16:29:53 2012
+u r-bioc-edger_2.4.6~dfsg-1.diff.gz ftp.upload.debian.org Sat Mar 17 16:29:54 2012
+u r-bioc-edger_2.4.6~dfsg.orig.tar.gz ftp.upload.debian.org Sat Mar 17 16:29:58 2012
+u r-bioc-edger_2.4.6~dfsg-1_amd64.changes ftp.upload.debian.org Sat Mar 17 16:29:59 2012
+s r-bioc-edger_2.4.6~dfsg-1_amd64.changes ftp.upload.debian.org Sat Mar 17 16:29:59 2012
--
empirical analysis of digital gene expression data in R
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