[med-svn] r10161 - in trunk/packages/rostlab: . libai-fann-perl/trunk/debian librg-blast-parser-perl librostlab librostlab/trunk librostlab/trunk/debian librostlab/trunk/debian/source librostlab-blast libzerg-perl/tags proftmb/tags
Laszlo Kajan
lkajan-guest at alioth.debian.org
Thu Mar 29 16:03:52 UTC 2012
Author: lkajan-guest
Date: 2012-03-29 16:03:51 +0000 (Thu, 29 Mar 2012)
New Revision: 10161
Added:
trunk/packages/rostlab/librg-blast-parser-perl/
trunk/packages/rostlab/librg-blast-parser-perl/branches/
trunk/packages/rostlab/librg-blast-parser-perl/tags/
trunk/packages/rostlab/librg-blast-parser-perl/trunk/
trunk/packages/rostlab/librostlab-blast/
trunk/packages/rostlab/librostlab-blast/branches/
trunk/packages/rostlab/librostlab-blast/tags/
trunk/packages/rostlab/librostlab-blast/trunk/
trunk/packages/rostlab/librostlab/
trunk/packages/rostlab/librostlab/branches/
trunk/packages/rostlab/librostlab/tags/
trunk/packages/rostlab/librostlab/trunk/
trunk/packages/rostlab/librostlab/trunk/debian/
trunk/packages/rostlab/librostlab/trunk/debian/changelog
trunk/packages/rostlab/librostlab/trunk/debian/compat
trunk/packages/rostlab/librostlab/trunk/debian/control
trunk/packages/rostlab/librostlab/trunk/debian/copyright
trunk/packages/rostlab/librostlab/trunk/debian/librostlab-doc.docs
trunk/packages/rostlab/librostlab/trunk/debian/librostlab3-dev.install
trunk/packages/rostlab/librostlab/trunk/debian/librostlab3.install
trunk/packages/rostlab/librostlab/trunk/debian/rules
trunk/packages/rostlab/librostlab/trunk/debian/source/
trunk/packages/rostlab/librostlab/trunk/debian/source/format
trunk/packages/rostlab/librostlab/trunk/debian/watch
Modified:
trunk/packages/rostlab/libai-fann-perl/trunk/debian/compat
trunk/packages/rostlab/libai-fann-perl/trunk/debian/control
trunk/packages/rostlab/libai-fann-perl/trunk/debian/rules
trunk/packages/rostlab/libzerg-perl/tags/
trunk/packages/rostlab/proftmb/tags/
Log:
new directories for projects librostlab librostlab-blast librg-blast-parser-perl
Modified: trunk/packages/rostlab/libai-fann-perl/trunk/debian/compat
===================================================================
--- trunk/packages/rostlab/libai-fann-perl/trunk/debian/compat 2012-03-29 13:51:27 UTC (rev 10160)
+++ trunk/packages/rostlab/libai-fann-perl/trunk/debian/compat 2012-03-29 16:03:51 UTC (rev 10161)
@@ -1 +1 @@
-8
+7
Modified: trunk/packages/rostlab/libai-fann-perl/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/libai-fann-perl/trunk/debian/control 2012-03-29 13:51:27 UTC (rev 10160)
+++ trunk/packages/rostlab/libai-fann-perl/trunk/debian/control 2012-03-29 16:03:51 UTC (rev 10161)
@@ -4,7 +4,7 @@
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Laszlo Kajan <lkajan at rostlab.org>
DM-Upload-Allowed: yes
-Build-Depends: cdbs, debhelper (>= 8), libfann-dev (>= 2.1.0~beta~)
+Build-Depends: debhelper (>= 7), libfann-dev (>= 2.1.0~beta~)
Standards-Version: 3.9.2
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/libai-fann-perl/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/rostlab/libai-fann-perl/trunk/
Modified: trunk/packages/rostlab/libai-fann-perl/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/libai-fann-perl/trunk/debian/rules 2012-03-29 13:51:27 UTC (rev 10160)
+++ trunk/packages/rostlab/libai-fann-perl/trunk/debian/rules 2012-03-29 16:03:51 UTC (rev 10161)
@@ -1,7 +1,7 @@
#!/usr/bin/make -f
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/perl-makemaker.mk
+# In order to make dh verbose set this to 1:
+export DH_VERBOSE=1
-
-# Add here any variable or target overrides you need.
+%:
+ dh --parallel $@
Property changes on: trunk/packages/rostlab/librostlab
___________________________________________________________________
Added: svn:ignore
+ build-area
tarballs
Property changes on: trunk/packages/rostlab/librostlab/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/rostlab/librostlab/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/librostlab/trunk/debian/changelog (rev 0)
+++ trunk/packages/rostlab/librostlab/trunk/debian/changelog 2012-03-29 16:03:51 UTC (rev 10161)
@@ -0,0 +1,140 @@
+librostlab (1.0.20-1) UNRELEASED; urgency=low
+
+ * Moved blast parser out into librostlab-blast.
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 28 Mar 2012 16:53:34 +0200
+
+librostlab (1.0.19) unstable; urgency=low
+
+ * Added trace_scanning() and changed trace_scanning( bool )
+ * Fixed multi-result file parsing
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 21 Mar 2012 14:47:50 +0100
+
+librostlab (1.0.18) unstable; urgency=low
+
+ * Fixed more std::.
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 21 Mar 2012 14:41:19 +0100
+
+librostlab (1.0.17) unstable; urgency=low
+
+ * No using namespace std; any more in headers
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 21 Mar 2012 13:50:03 +0100
+
+librostlab (1.0.16) unstable; urgency=low
+
+ * changed library license to LGPL
+ * Changed package name to librostlab0, librostlab0-dbg and librostlab0-dev.
+ * Provides librostlab-dev.
+ * Hit is now a template with hsp type as parameter.
+ * Added NCBI BLOSUM62 matrix data.
+ * Cleaned up grammar for rounds.
+ * Added rostlab_stdio.h
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 14 Oct 2011 20:41:57 +0200
+
+librostlab (1.0.15) unstable; urgency=low
+
+ * better description
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 14 Oct 2011 20:34:30 +0200
+
+librostlab (1.0.14) unstable; urgency=low
+
+ * added documentation
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 14 Oct 2011 20:12:30 +0200
+
+librostlab (1.0.13) unstable; urgency=low
+
+ * parser::parse now returns result_type
+ * cast of result_type to bool is done
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 14 Oct 2011 19:34:04 +0200
+
+librostlab (1.0.12) unstable; urgency=low
+
+ * more headers installed
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 14 Oct 2011 19:18:42 +0200
+
+librostlab (1.0.11) unstable; urgency=low
+
+ * headers are now installed
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 14 Oct 2011 19:02:15 +0200
+
+librostlab (1.0.10) unstable; urgency=low
+
+ * Removed libzerg-based blast parser
+ * Added bison/flex based LGPL blast parser
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Thu, 06 Oct 2011 19:57:29 +0200
+
+librostlab (1.0.9) unstable; urgency=low
+
+ * flock_resource -> file_lock_resource
+ * locking now with fcntl: also works on NFS
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Mon, 26 Sep 2011 18:50:22 +0200
+
+librostlab (1.0.8) unstable; urgency=low
+
+ * added missing -dev dependency on librostlab0
+ * removed private members from doxygen documentation
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 23 Sep 2011 21:45:02 +0200
+
+librostlab (1.0.7) unstable; urgency=low
+
+ * renamed _map_split_in_2 to map_split_in_2
+ * added blastpgp parser
+ * cdbs
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 23 Sep 2011 21:43:11 +0200
+
+librostlab (1.0.6) unstable; urgency=low
+
+ * added mapAA2int.h
+ Maximilian Hecht <hecht at rostlab.org> Wed, 29 Jun 2011 09:50:51 +0200
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 29 Jun 2011 10:50:51 +0200
+
+librostlab (1.0.5) unstable; urgency=low
+
+ * added throw() definitions to interface of flock_resource
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Mon, 20 Jun 2011 10:52:36 +0200
+
+librostlab (1.0.4) unstable; urgency=low
+
+ * FASTA format checking improved
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 10 Jun 2011 10:29:22 +0200
+
+librostlab (1.0.3) stable; urgency=low
+
+ * flock debugging added
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 02 Feb 2011 14:53:19 +0100
+
+librostlab (1.0.2) stable; urgency=low
+
+ * does not touch lock file any more
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 02 Feb 2011 13:44:10 +0100
+
+librostlab (1.0.1) stable; urgency=low
+
+ * now closes lock file before throwing an exception if locking fails
+ * added cwd_resource
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Thu, 20 Jan 2011 23:57:04 +0100
+
+librostlab (1.0.0) stable; urgency=low
+
+ * Initial release
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 15 Sep 2010 15:28:53 +0200
Added: trunk/packages/rostlab/librostlab/trunk/debian/compat
===================================================================
--- trunk/packages/rostlab/librostlab/trunk/debian/compat (rev 0)
+++ trunk/packages/rostlab/librostlab/trunk/debian/compat 2012-03-29 16:03:51 UTC (rev 10161)
@@ -0,0 +1 @@
+7
Added: trunk/packages/rostlab/librostlab/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/librostlab/trunk/debian/control (rev 0)
+++ trunk/packages/rostlab/librostlab/trunk/debian/control 2012-03-29 16:03:51 UTC (rev 10161)
@@ -0,0 +1,72 @@
+Source: librostlab
+Priority: extra
+Maintainer: Laszlo Kajan <lkajan at rostlab.org>
+Build-Depends: debhelper (>= 7.0.50~), autotools-dev, graphviz
+Standards-Version: 3.9.3
+Section: libs
+Homepage: http://rostlab.org/
+
+Package: librostlab3
+Architecture: any
+Section: libs
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: C++ library from the Rost Lab
+ * current working directory resource
+ * exception with stack backtrace
+ * file lock resource
+ * passwd and group structures for C++
+ * effective uid and gid resource
+ * rostlab::bio::seq class with stream input operator for FASTA format
+ * umask resource
+ .
+ This package contains the shared library.
+
+Package: librostlab3-dev
+Section: libdevel
+Architecture: any
+Depends: librostlab3 (= ${binary:Version}), ${misc:Depends},
+Suggests: librostlab-doc
+Provides: librostlab-dev
+Replaces: librostlab0-dev
+Description: C++ library from the Rost Lab
+ * current working directory resource
+ * exception with stack backtrace
+ * file lock resource
+ * passwd and group structures for C++
+ * effective uid and gid resource
+ * rostlab::bio::seq class with stream input operator for FASTA format
+ * umask resource
+ .
+ This package contains files necessary for developing applications with
+ librostlab.
+
+Package: librostlab-doc
+Section: doc
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: C++ library from the Rost Lab
+ * current working directory resource
+ * exception with stack backtrace
+ * file lock resource
+ * passwd and group structures for C++
+ * effective uid and gid resource
+ * rostlab::bio::seq class with stream input operator for FASTA format
+ * umask resource
+ .
+ This package contains html documentation.
+
+Package: librostlab3-dbg
+Architecture: any
+Section: debug
+Priority: extra
+Depends: librostlab3 (= ${binary:Version}), ${misc:Depends}
+Description: debugging symbols for librostlab
+ * current working directory resource
+ * exception with stack backtrace
+ * file lock resource
+ * passwd and group structures for C++
+ * effective uid and gid resource
+ * rostlab::bio::seq class with stream input operator for FASTA format
+ * umask resource
+ .
+ This package provides the detached debug symbols for librostlab.
Added: trunk/packages/rostlab/librostlab/trunk/debian/copyright
===================================================================
--- trunk/packages/rostlab/librostlab/trunk/debian/copyright (rev 0)
+++ trunk/packages/rostlab/librostlab/trunk/debian/copyright 2012-03-29 16:03:51 UTC (rev 10161)
@@ -0,0 +1,46 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: librostlab
+Upstream-Contact: Laszlo Kajan <lkajan at rostlab.org>
+Source: http://rostlab.org/
+
+Files: debian/*
+Copyright: 2012 Laszlo Kajan <lkajan at rostlab.org>, Technical University of Munich, Germany
+License: GPL-3+
+
+Files: *
+Copyright: 2012 Laszlo Kajan <lkajan at rostlab.org>, Technical University of Munich, Germany
+License: LGPL-3+
+
+License: GPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in `/usr/share/common-licenses/GPL-3'.
+
+License: LGPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU Lesser General
+ Public License version 3 can be found in `/usr/share/common-licenses/LGPL-3'.
Added: trunk/packages/rostlab/librostlab/trunk/debian/librostlab-doc.docs
===================================================================
--- trunk/packages/rostlab/librostlab/trunk/debian/librostlab-doc.docs (rev 0)
+++ trunk/packages/rostlab/librostlab/trunk/debian/librostlab-doc.docs 2012-03-29 16:03:51 UTC (rev 10161)
@@ -0,0 +1,2 @@
+doxygen-doc/html/
+lib/librostlab.tag
Added: trunk/packages/rostlab/librostlab/trunk/debian/librostlab3-dev.install
===================================================================
--- trunk/packages/rostlab/librostlab/trunk/debian/librostlab3-dev.install (rev 0)
+++ trunk/packages/rostlab/librostlab/trunk/debian/librostlab3-dev.install 2012-03-29 16:03:51 UTC (rev 10161)
@@ -0,0 +1,4 @@
+usr/include/*
+usr/lib/librostlab.a
+usr/lib/librostlab.la
+usr/lib/librostlab.so
Added: trunk/packages/rostlab/librostlab/trunk/debian/librostlab3.install
===================================================================
--- trunk/packages/rostlab/librostlab/trunk/debian/librostlab3.install (rev 0)
+++ trunk/packages/rostlab/librostlab/trunk/debian/librostlab3.install 2012-03-29 16:03:51 UTC (rev 10161)
@@ -0,0 +1 @@
+usr/lib/librostlab.so.*
Added: trunk/packages/rostlab/librostlab/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/librostlab/trunk/debian/rules (rev 0)
+++ trunk/packages/rostlab/librostlab/trunk/debian/rules 2012-03-29 16:03:51 UTC (rev 10161)
@@ -0,0 +1,25 @@
+#!/usr/bin/make -f
+
+# Uncomment this to turn on verbose mode.
+export DH_VERBOSE=1
+
+%:
+ dh $@ --parallel
+
+.PHONY: override_dh_auto_build
+override_dh_auto_build:
+ dh_auto_build --parallel
+ $(MAKE) -C lib doxygen-doc
+
+.PHONY: override_dh_strip
+override_dh_strip:
+ dh_strip --dbg-package=librostlab3-dbg
+
+.PHONY: override_dh_compress
+override_dh_compress:
+ dh_compress -Xlibrostlab.tag
+
+.PHONY: get-orig-source
+get-orig-source:
+ mkdir -p ../tarballs
+ uscan --verbose --force-download --destdir=../tarballs
Property changes on: trunk/packages/rostlab/librostlab/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/rostlab/librostlab/trunk/debian/source/format
===================================================================
--- trunk/packages/rostlab/librostlab/trunk/debian/source/format (rev 0)
+++ trunk/packages/rostlab/librostlab/trunk/debian/source/format 2012-03-29 16:03:51 UTC (rev 10161)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/rostlab/librostlab/trunk/debian/watch
===================================================================
--- trunk/packages/rostlab/librostlab/trunk/debian/watch (rev 0)
+++ trunk/packages/rostlab/librostlab/trunk/debian/watch 2012-03-29 16:03:51 UTC (rev 10161)
@@ -0,0 +1,4 @@
+# Compulsory line, this is a version 3 file
+version=3
+
+ftp://rostlab.org/free/librostlab-([0-9.]+)\.tar\.gz debian uupdate
Property changes on: trunk/packages/rostlab/libzerg-perl/tags
___________________________________________________________________
Added: svn:ignore
+ build-area
tarballs
Property changes on: trunk/packages/rostlab/proftmb/tags
___________________________________________________________________
Added: svn:ignore
+ build-area
tarballs
More information about the debian-med-commit
mailing list