[med-svn] r12381 - trunk/packages/ltrsift/trunk/debian

[Sascha Steinbiss]

Author: sascha-guest
Date: 2012-10-11 09:08:27 +0000 (Thu, 11 Oct 2012)
New Revision: 12381

Added:
   trunk/packages/ltrsift/trunk/debian/ltrsift-examples.examples
Removed:
   trunk/packages/ltrsift/trunk/debian/docs
Modified:
   trunk/packages/ltrsift/trunk/debian/control
   trunk/packages/ltrsift/trunk/debian/ltrsift.install
Log:
move large example data into own package to avoid lintian warning


Modified: trunk/packages/ltrsift/trunk/debian/control
===================================================================
--- trunk/packages/ltrsift/trunk/debian/control	2012-10-11 08:43:33 UTC (rev 12380)
+++ trunk/packages/ltrsift/trunk/debian/control	2012-10-11 09:08:27 UTC (rev 12381)
@@ -29,7 +29,19 @@
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}, ltrsift (= ${binary:Version})
 Section: debug
+Priority: extra
 Description: postprocessing and classification of LTR retrotransposons, with debug symbols
  This package contains debug information stripped from LTRsift.
  You may decide to install it to help identifying issues, typically
  to help communication with upstream developers.
+
+Package: ltrsift-examples
+Architecture: all
+Depends: ${misc:Depends}
+Suggests: ltrsift
+Description: example data for LTRsift
+ This package contains test sequences (gzipped FASTA) and annotations (GFF3)
+ from the Drosophila melanogaster (fruit fly) genome, to be used in an example
+ process of  postprocessing and classification of newly detected LTR
+ retrotransposons. Scripts for using LTRsift to encode the sequences into a
+ format accepted by LTRsift are included as well.

Deleted: trunk/packages/ltrsift/trunk/debian/docs
===================================================================
--- trunk/packages/ltrsift/trunk/debian/docs	2012-10-11 08:43:33 UTC (rev 12380)
+++ trunk/packages/ltrsift/trunk/debian/docs	2012-10-11 09:08:27 UTC (rev 12381)
@@ -1 +0,0 @@
-README

Added: trunk/packages/ltrsift/trunk/debian/ltrsift-examples.examples
===================================================================
--- trunk/packages/ltrsift/trunk/debian/ltrsift-examples.examples	                        (rev 0)
+++ trunk/packages/ltrsift/trunk/debian/ltrsift-examples.examples	2012-10-11 09:08:27 UTC (rev 12381)
@@ -0,0 +1,5 @@
+sample_data/clean_encseqs
+sample_data/prepare_encseqs
+sample_data/dmel58.ltrd.gff3
+sample_data/dmel-2L-chromosome-r5.8.fasta.gz
+sample_data/README

Modified: trunk/packages/ltrsift/trunk/debian/ltrsift.install
===================================================================
--- trunk/packages/ltrsift/trunk/debian/ltrsift.install	2012-10-11 08:43:33 UTC (rev 12380)
+++ trunk/packages/ltrsift/trunk/debian/ltrsift.install	2012-10-11 09:08:27 UTC (rev 12381)
@@ -1,10 +1,5 @@
 usr/bin/ltrsift
 usr/bin/ltrsift_encode
-usr/sample_data/clean_encseqs usr/share/ltrsift/sample_data
-usr/sample_data/prepare_encseqs usr/share/ltrsift/sample_data
-usr/sample_data/dmel58.ltrd.gff3 usr/share/ltrsift/sample_data
-usr/sample_data/dmel-2L-chromosome-r5.8.fasta.gz usr/share/ltrsift/sample_data
-usr/sample_data/README usr/share/ltrsift/sample_data
 usr/filters usr/share/ltrsift
 debian/ltrsift.desktop  usr/share/applications
 debian/ltrsift.svg  usr/share/icons/hicolor/scalable/apps