[med-svn] r12965 - in trunk/packages/soap/soapdenovo2/trunk/debian: . patches

[Olivier Sallou]

Author: osallou
Date: 2013-02-09 11:05:22 +0000 (Sat, 09 Feb 2013)
New Revision: 12965

Modified:
   trunk/packages/soap/soapdenovo2/trunk/debian/README.Debian
   trunk/packages/soap/soapdenovo2/trunk/debian/patches/fix_gcc_path
   trunk/packages/soap/soapdenovo2/trunk/debian/patches/fix_usage_name
   trunk/packages/soap/soapdenovo2/trunk/debian/rules
Log:
add information and fortify build

Modified: trunk/packages/soap/soapdenovo2/trunk/debian/README.Debian
===================================================================
--- trunk/packages/soap/soapdenovo2/trunk/debian/README.Debian	2013-02-09 10:56:54 UTC (rev 12964)
+++ trunk/packages/soap/soapdenovo2/trunk/debian/README.Debian	2013-02-09 11:05:22 UTC (rev 12965)
@@ -1,7 +1,7 @@
 * SOAPdenovo2
 
 Binaries are soapdenovo2-63mer and soapdenovo2-127mer.
-See manpage for further explanations
+See manpage soapdenovo2 for further explanations
 
 SparsePregraph does not compile from source, as such binaries are not provided.
 

Modified: trunk/packages/soap/soapdenovo2/trunk/debian/patches/fix_gcc_path
===================================================================
--- trunk/packages/soap/soapdenovo2/trunk/debian/patches/fix_gcc_path	2013-02-09 10:56:54 UTC (rev 12964)
+++ trunk/packages/soap/soapdenovo2/trunk/debian/patches/fix_gcc_path	2013-02-09 11:05:22 UTC (rev 12965)
@@ -1,3 +1,8 @@
+Subject: gcc wrong hard coded path
+Description: remove path for gcc
+Forwarded: yes
+Author: Olivier Sallou <osallou at debian.org>
+Last-Updated: 2013-02-09
 --- a/sparsePregraph/Makefile
 +++ b/sparsePregraph/Makefile
 @@ -1,11 +1,11 @@

Modified: trunk/packages/soap/soapdenovo2/trunk/debian/patches/fix_usage_name
===================================================================
--- trunk/packages/soap/soapdenovo2/trunk/debian/patches/fix_usage_name	2013-02-09 10:56:54 UTC (rev 12964)
+++ trunk/packages/soap/soapdenovo2/trunk/debian/patches/fix_usage_name	2013-02-09 11:05:22 UTC (rev 12965)
@@ -1,3 +1,10 @@
+Subject: update binary name
+Description: usage show SOAPdenovo binary name
+ while generated binaries are kmer dependent.
+ Debian modification to lowercase applied too.
+Forwarded: no
+Author: Olivier Sallou <osallou at debian.org>
+Last-Updated: 2013-02-09
 --- a/standardPregraph/main.c
 +++ b/standardPregraph/main.c
 @@ -99,7 +99,7 @@

Modified: trunk/packages/soap/soapdenovo2/trunk/debian/rules
===================================================================
--- trunk/packages/soap/soapdenovo2/trunk/debian/rules	2013-02-09 10:56:54 UTC (rev 12964)
+++ trunk/packages/soap/soapdenovo2/trunk/debian/rules	2013-02-09 11:05:22 UTC (rev 12965)
@@ -8,8 +8,8 @@
 	dh $@ 
 
 override_dh_auto_build:
-	cd standardPregraph && make 63mer=1
-	cd standardPregraph && make 127mer=1
+	cd standardPregraph && DEB_BUILD_HARDENING=1 make 63mer=1
+	cd standardPregraph && DEB_BUILD_HARDENING=1 make 127mer=1
 #	cd sparsePregraph && make
 	dh_auto_build