[med-svn] r12980 - trunk/packages/meme/trunk/debian

[Andreas Tille]

Author: tille
Date: 2013-02-11 09:33:06 +0000 (Mon, 11 Feb 2013)
New Revision: 12980

Modified:
   trunk/packages/meme/trunk/debian/rules
Log:
Mass changes basically for two purposes: building twice in a row; manpages using help2man


Modified: trunk/packages/meme/trunk/debian/rules
===================================================================
--- trunk/packages/meme/trunk/debian/rules	2013-02-10 20:47:19 UTC (rev 12979)
+++ trunk/packages/meme/trunk/debian/rules	2013-02-11 09:33:06 UTC (rev 12980)
@@ -4,16 +4,42 @@
 # Thorsten Alteholz <debian at alteholz.de>
 # GPL
 
-DBPATH=/var/lib/meme
-LOGPATH=/var/log/meme
+pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
+version=$(shell dpkg-parsechangelog -ldebian/changelog | grep Version: | cut -f2 -d' ' | cut -f1 -d- )
+mandir=$(CURDIR)/debian/$(pkg)/usr/share/man/man1/
 
+DBPATH=/var/lib/$(pkg)
+LOGPATH=/var/log/$(pkg)
+# Only needed for fixing brocken upstream build mechanism
+PYTHON=/usr/bin/python
+
 %:
 	dh $@ --with autoreconf,python2
 
+override_dh_autoreconf:
+	# save original configuration files to enable building twice in a row
+	mkdir -p orig
+	cp -a config orig/
+	cp -a aclocal.m4 INSTALL configure orig/
+	mkdir -p orig/website/html
+	cp -a website/html/metameme-help-format.html orig/website/html
+	cp -a website/html/metameme-intro.html orig/website/html
+	cp -a website/html/cisml.pattern.html.xsl orig/website/html
+	mkdir -p orig/src
+	cp -a src/projrel.h orig/src
+	cp -a src/dir.h orig/src
+	#mkdir -p orig/etc
+	#cp -a etc/logging.conf orig/etc
+	for origfile in `find . -type f -name Makefile.in` ; do \
+	    mkdir -p orig/`dirname $$origfile` ; \
+	    cp -a $${origfile} orig/`dirname $$origfile` ; \
+	done ;
+	dh_autoreconf
+
 override_dh_auto_configure:
 	./configure --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info \
 		    --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) \
-		    --sysconfdir=/etc/meme \
+		    --sysconfdir=/etc/$(pkg) \
 		    --with-logs=$(LOGPATH) \
 		    --with-db=$(DBPATH) \
 		    --with-python=/usr/bin/python
@@ -24,29 +50,50 @@
 override_dh_install:
 	#Sort out some funny locations used by upstream
 	mv debian/tmp/usr/doc/examples debian/tmp || true
-	mkdir -p debian/tmp/usr/share/doc/meme ; mv debian/tmp/usr/doc/* debian/tmp/usr/share/doc/meme
-	mv debian/tmp/etc/meme/meme.doc debian/tmp/usr/share/doc/meme
+	mkdir -p debian/tmp/usr/share/doc/$(pkg) ; mv debian/tmp/usr/doc/* debian/tmp/usr/share/doc/$(pkg)
+	mv debian/tmp/etc/$(pkg)/meme.doc debian/tmp/usr/share/doc/$(pkg)
 	find ./* -print|grep STRGGTCAN.meme|xargs chmod 644
-	find ./* -print
 	mkdir -p debian/tmp/usr/share/perl5/Meme
 	cp website/scripts/*.pm debian/tmp/usr/share/perl5/Meme
 	cp scripts/*.pm debian/tmp/usr/share/perl5/Meme
-	mkdir -p debian/tmp-manpages
+	# fix insufficient replacement procedure of @WHICHPYTHON@
+	set -x ; \
+	for pyfile in sequence.py hypergeometric.py ; do \
+	    sed -i -e 's%@WHICHPYTHON@%$(PYTHON)%' debian/tmp/usr/bin/$${pyfile} ; \
+	done
+	dh_install -v --sourcedir=debian/tmp
+
+override_dh_installman:
+	mkdir -p $(mandir)
 	for var in `ls debian/tmp/usr/bin/*` ; do \
-	    if head -n 1 $${var} | grep -q '^#!/usr/bin/perl' ; then pod2man $${var} > debian/tmp-manpages/`basename $${var}`.1 ; fi ; \
+	    if head -n 1 $${var} | grep -q '^#!/usr/bin/perl' ; then pod2man $${var} > $(mandir)/`basename $${var}`.1 ; fi ; \
 	done
+	help2man --no-info  --help-option="''" --no-discard-stderr \
+	    --name='Average Motif Affinity' --version-string="$(version)" \
+                 $(CURDIR)/debian/$(pkg)/usr/bin/ama > $(mandir)/ama.1
+	help2man --no-info  --help-option="''" --no-discard-stderr \
+	    --name='Analysis of Motif Enrichment' --version-string="$(version)" \
+                 $(CURDIR)/debian/$(pkg)/usr/bin/ame > $(mandir)/ame.1
+	help2man --no-info  --help-option="''" --no-discard-stderr \
+	    --name='Build a linear hidden Markov model (HMM) from motif' --version-string="$(version)" \
+                 $(CURDIR)/debian/$(pkg)/usr/bin/beadstring > $(mandir)/beadstring.1
 	# Remove those manpages with zero bytes where pod2man failed in doing a proper job
-	find debian/tmp-manpages -size 0 -delete
-	dh_install -v --sourcedir=debian/tmp
-	find ./* -print
+	find $(mandir) -size 0 -delete
+	dh_installman
 
-override_dh_auto_clean:
-	dh_auto_clean
+override_dh_clean:
+	dh_clean
 	rm -rf debian/tmp-manpages
-	#rm -rf tests/*/*.sed
-	#rm -rf tests/results
-	#cd etc; rm -f fasta_db.csv fasta_db.index gomo_db.csv logo.js.xsl meme.css.xsl motif_db.csv motif_db.index tomtom_config.xml
-	#rm -f scripts/*.pyc
+	if [ -d orig ] ; then \
+	    mv orig/config/* config ; \
+	    for origfile in `find orig -type f` ; do \
+		mv $${origfile} `echo $$origfile | sed 's?orig/??'` ; \
+	    done ; \
+	fi
+	rm -rf orig
+	rm -f etc/motif_db.csv etc/gomo_db.csv etc/fasta_db.csv etc/logging.conf
+	# Remove Makefiles of libxml2 and libxslt
+	find src -name Makefile -delete
 
 #XXX Disable testing temporarily to save time
 override_dh_auto_test: