[med-svn] r13033 - in trunk/packages/mobyle/mobyle/tags: . 1.5+dfsg-1/debian 1.5+dfsg-1/debian/patches
Olivier Sallou
osallou at alioth.debian.org
Mon Feb 18 11:11:42 UTC 2013
Author: osallou
Date: 2013-02-18 11:11:42 +0000 (Mon, 18 Feb 2013)
New Revision: 13033
Added:
trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/
trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/changelog
trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/control
trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/change_mobylehome
trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/defaultconfig
Removed:
trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/changelog
trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/control
trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/change_mobylehome
trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/defaultconfig
Log:
[svn-buildpackage] Tagging mobyle 1.5+dfsg-1
Deleted: trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/changelog
===================================================================
--- trunk/packages/mobyle/mobyle/trunk/debian/changelog 2013-02-18 10:48:51 UTC (rev 13031)
+++ trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/changelog 2013-02-18 11:11:42 UTC (rev 13033)
@@ -1,77 +0,0 @@
-mobyle (1.0.7+dfsg-1) unstable; urgency=low
-
- [ Olivier Sallou ]
- * New upstream release
- * debian/get-orig-source: Normalised versioning (~dfsg -> +dfsg)
-
- [ Andreas Tille ]
- * debian/copyright:
- - DEP5
- - Add Files-Excluded to document what was removed from original source
- * debian/watch: Normalised versioning (~dfsg -> +dfsg)
-
- -- Olivier Sallou <osallou at debian.org> Tue, 04 Sep 2012 13:27:00 +0200
-
-mobyle (1.0.6~dfsg-1) unstable; urgency=low
-
- * New upstream release
-
- -- Olivier Sallou <osallou at debian.org> Mon, 25 Jun 2012 15:55:39 +0200
-
-mobyle (1.0.5~dfsg-2) unstable; urgency=low
-
- * Add postrm for clean purge.
-
- -- Olivier Sallou <osallou at debian.org> Sun, 03 Jun 2012 13:36:48 +0200
-
-mobyle (1.0.5~dfsg-1) unstable; urgency=low
-
- * New upstream release
- * debian/patches/defaultconfig: add phylip binary path
- * debian/control: remove some recommends
- [ Andreas Tille ]
- * debian/upstream: Added citations
-
- -- Olivier Sallou <osallou at debian.org> Tue, 22 May 2012 17:53:24 +0200
-
-mobyle (1.0.4~dfsg-3) unstable; urgency=low
-
- * Use invoke-rc.d instead of service command to restart
- apache as per Debian policy (Closes: #656078)
- * Remove zx compression
- * Add doc-base
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Mon, 16 Jan 2012 11:43:31 +0100
-
-mobyle (1.0.4~dfsg-2) unstable; urgency=low
-
- * Add missing dep on python-pygraphviz for workflows
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Tue, 13 Dec 2011 13:48:42 +0100
-
-mobyle (1.0.4~dfsg-1) unstable; urgency=low
-
- * New upstream version.
- - Possible break in previous xml program description,
- see README.Debian file for more info
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 07 Dec 2011 17:20:09 +0100
-
-mobyle (1.0.3~dfsg-1) unstable; urgency=low
-
- * New upstream release (bug fixes)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 02 Nov 2011 12:08:19 +0100
-
-mobyle (1.0.2~dfsg-2) unstable; urgency=low
-
- * debian/rules : Thanks to A. Ucko
- - fix issue when building arch depandant only package (Closes: #644277)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 05 Oct 2011 13:35:00 +0900
-
-mobyle (1.0.2~dfsg-1) unstable; urgency=low
-
- * Initial release (Closes: #637230)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Mon, 03 Oct 2011 12:56:44 +0900
Copied: trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/changelog (from rev 13032, trunk/packages/mobyle/mobyle/trunk/debian/changelog)
===================================================================
--- trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/changelog (rev 0)
+++ trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/changelog 2013-02-18 11:11:42 UTC (rev 13033)
@@ -0,0 +1,83 @@
+mobyle (1.5+dfsg-1) UNRELEASED; urgency=low
+
+ * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 04 Sep 2012 13:38:32 +0200
+
+mobyle (1.0.7+dfsg-1) unstable; urgency=low
+
+ [ Olivier Sallou ]
+ * New upstream release
+ * debian/get-orig-source: Normalised versioning (~dfsg -> +dfsg)
+
+ [ Andreas Tille ]
+ * debian/copyright:
+ - DEP5
+ - Add Files-Excluded to document what was removed from original source
+ * debian/watch: Normalised versioning (~dfsg -> +dfsg)
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 04 Sep 2012 13:27:00 +0200
+
+mobyle (1.0.6~dfsg-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org> Mon, 25 Jun 2012 15:55:39 +0200
+
+mobyle (1.0.5~dfsg-2) unstable; urgency=low
+
+ * Add postrm for clean purge.
+
+ -- Olivier Sallou <osallou at debian.org> Sun, 03 Jun 2012 13:36:48 +0200
+
+mobyle (1.0.5~dfsg-1) unstable; urgency=low
+
+ * New upstream release
+ * debian/patches/defaultconfig: add phylip binary path
+ * debian/control: remove some recommends
+ [ Andreas Tille ]
+ * debian/upstream: Added citations
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 22 May 2012 17:53:24 +0200
+
+mobyle (1.0.4~dfsg-3) unstable; urgency=low
+
+ * Use invoke-rc.d instead of service command to restart
+ apache as per Debian policy (Closes: #656078)
+ * Remove zx compression
+ * Add doc-base
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Mon, 16 Jan 2012 11:43:31 +0100
+
+mobyle (1.0.4~dfsg-2) unstable; urgency=low
+
+ * Add missing dep on python-pygraphviz for workflows
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Tue, 13 Dec 2011 13:48:42 +0100
+
+mobyle (1.0.4~dfsg-1) unstable; urgency=low
+
+ * New upstream version.
+ - Possible break in previous xml program description,
+ see README.Debian file for more info
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 07 Dec 2011 17:20:09 +0100
+
+mobyle (1.0.3~dfsg-1) unstable; urgency=low
+
+ * New upstream release (bug fixes)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 02 Nov 2011 12:08:19 +0100
+
+mobyle (1.0.2~dfsg-2) unstable; urgency=low
+
+ * debian/rules : Thanks to A. Ucko
+ - fix issue when building arch depandant only package (Closes: #644277)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 05 Oct 2011 13:35:00 +0900
+
+mobyle (1.0.2~dfsg-1) unstable; urgency=low
+
+ * Initial release (Closes: #637230)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Mon, 03 Oct 2011 12:56:44 +0900
Deleted: trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/control
===================================================================
--- trunk/packages/mobyle/mobyle/trunk/debian/control 2013-02-18 10:48:51 UTC (rev 13031)
+++ trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/control 2013-02-18 11:11:42 UTC (rev 13033)
@@ -1,37 +0,0 @@
-Source: mobyle
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Olivier Sallou <osallou at debian.org>
-Build-Depends: debhelper (>= 8.9.7), python (>= 2.5), python-simpletal (>=4.1), python-simplejson (>= 1.7.1), python-imaging (>= 1.1.5), python-lxml (>= 2.2.4)
-Standards-Version: 3.9.3
-Homepage: https://projets.pasteur.fr/projects/show/mobyle
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mobyle/mobyle/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mobyle/mobyle/trunk/
-
-Package: mobyle
-Architecture: all
-Depends: ${misc:Depends}, python (>= 2.5), apache2, python-simpletal (>=4.1),
-# see INSTALL
- python-simpletal (<< 5.0~), python-support (>= 0.90), python-pygraphviz,
- python-simplejson (>= 1.7.1), python-imaging (>= 1.1.5),
- python-lxml (>= 2.2.4), squizz, libjs-scriptaculous, libjs-jquery, libjs-prototype, mobyle-utils, jing, ttf-bitstream-vera
-Suggests: python-openid (>= 2.2.4), python-dnspython (>= 1.5.0)
-Recommends: mobyle-programs (>= 4.0)
-Breaks: mobyle-programs (<< 4.0-1)
-Description: Web portal that provides web forms for command-line software
- Mobyle is a framework and web portal specifically aimed at the integration of
- bioinformatics software and databanks. It generates a web interface from an xml
- description for command-line based tools.
- It can submit jobs locally or using DRM systems.
- .
- This package will restart Apache after enabling the ‘rewrite’ and ‘headers’
- modules.
-
-Package: mobyle-utils
-Architecture: any
-Depends: ${misc:Depends},${shlibs:Depends}
-Description: binary tools used by Mobyle
- Binary tools used by the Mobyle web portal to manage
- jobs.
Copied: trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/control (from rev 13032, trunk/packages/mobyle/mobyle/trunk/debian/control)
===================================================================
--- trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/control (rev 0)
+++ trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/control 2013-02-18 11:11:42 UTC (rev 13033)
@@ -0,0 +1,36 @@
+Source: mobyle
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Olivier Sallou <osallou at debian.org>
+Build-Depends: debhelper (>= 8.9.7), python (>= 2.5), python-simpletal (>=4.1), python-simplejson (>= 1.7.1), python-imaging (>= 1.1.5), python-lxml (>= 2.2.4)
+Standards-Version: 3.9.4
+Homepage: https://projets.pasteur.fr/projects/show/mobyle
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mobyle/mobyle/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mobyle/mobyle/trunk/
+
+Package: mobyle
+Architecture: all
+Depends: ${misc:Depends}, python (>= 2.5), apache2, python-simpletal (>=4.1),
+# see INSTALL
+ python-simpletal (<< 5.0~), python-support (>= 0.90), python-pygraphviz,
+ python-simplejson (>= 1.7.1), python-imaging (>= 1.1.5),
+ python-lxml (>= 2.2.4), squizz (>=0.99b+dfsg), libjs-scriptaculous, libjs-jquery, libjs-prototype, mobyle-utils, jing, ttf-bitstream-vera
+Suggests: python-openid (>= 2.2.4), python-dnspython (>= 1.5.0)
+Recommends: mobyle-programs (>= 5.1)
+Description: Web portal that provides web forms for command-line software
+ Mobyle is a framework and web portal specifically aimed at the integration of
+ bioinformatics software and databanks. It generates a web interface from an xml
+ description for command-line based tools.
+ It can submit jobs locally or using DRM systems.
+ .
+ This package will restart Apache after enabling the ‘rewrite’ and ‘headers’
+ modules.
+
+Package: mobyle-utils
+Architecture: any
+Depends: ${misc:Depends},${shlibs:Depends}
+Description: binary tools used by Mobyle
+ Binary tools used by the Mobyle web portal to manage
+ jobs.
Deleted: trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/change_mobylehome
===================================================================
--- trunk/packages/mobyle/mobyle/trunk/debian/patches/change_mobylehome 2013-02-18 10:48:51 UTC (rev 13031)
+++ trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/change_mobylehome 2013-02-18 11:11:42 UTC (rev 13033)
@@ -1,17 +0,0 @@
-Author: Olivier Sallou <olivier.sallou at irisa.fr>
-Description: Change the Mobyle path in generated path to fit to Debian paths
-Last-Update: 2011-08-09
---- a/setup.py
-+++ b/setup.py
-@@ -123,9 +123,9 @@
- l = f.readline()
- if not l: break
- if mob and l == 'MOBYLEHOME = None\n':
-- l = l.replace('None', "'"+mob+"'", 1)
-+ l = l.replace('None', "'debian/mobyle/usr/share/mobyle/core'", 1)
- if htm and l == 'MOBYLEHTDOCS = None\n':
-- l = l.replace('None', "'"+htm+"'", 1)
-+ l = l.replace('None', "'debian/mobyle/usr/share/mobyle/htdocs'", 1)
- g.write(l)
- g.close()
- f.close()
Copied: trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/change_mobylehome (from rev 13032, trunk/packages/mobyle/mobyle/trunk/debian/patches/change_mobylehome)
===================================================================
--- trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/change_mobylehome (rev 0)
+++ trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/change_mobylehome 2013-02-18 11:11:42 UTC (rev 13033)
@@ -0,0 +1,17 @@
+Author: Olivier Sallou <olivier.sallou at irisa.fr>
+Description: Change the Mobyle path in generated path to fit to Debian paths
+Last-Update: 2011-08-09
+--- a/setup.py
++++ b/setup.py
+@@ -147,9 +147,9 @@
+ if not l:
+ break
+ if mob and l == 'MOBYLEHOME = None\n':
+- l = l.replace('None', "'"+mob+"'", 1)
++ l = l.replace('None', "'debian/mobyle/usr/share/mobyle/core'", 1)
+ if htm and l == 'MOBYLEHTDOCS = None\n':
+- l = l.replace('None', "'"+htm+"'", 1)
++ l = l.replace('None', "'debian/mobyle/usr/share/mobyle/htdocs'", 1)
+ g.write(l)
+ g.close()
+ f.close()
Deleted: trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/defaultconfig
===================================================================
--- trunk/packages/mobyle/mobyle/trunk/debian/patches/defaultconfig 2013-02-18 10:48:51 UTC (rev 13031)
+++ trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/defaultconfig 2013-02-18 11:11:42 UTC (rev 13033)
@@ -1,42 +0,0 @@
-Author: Olivier Sallou <olivier.sallou at irisa.fr>
-Description: Set default config for ready-to-run app
-Last-Update: 2011-08-09
---- a/Example/Local/Config/Config.template.py
-+++ b/Example/Local/Config/Config.template.py
-@@ -10,13 +10,13 @@
-
-
- # the root url of mobyle
--ROOT_URL = "http://mydomain.fr:port"
-+ROOT_URL = "http://localhost"
-
- #base project url for mobyle cgis = ROOT_URL + CGI_PREFIX
--CGI_PREFIX = 'cgi-bin/mobyle/xxxxx'
-+CGI_PREFIX = 'cgi-bin/mobyle'
-
- #base project url for mobyle htdocs = ROOT_URL + HTDOCS_PREFIX
--HTDOCS_PREFIX = 'mobyle/xxxxx'
-+HTDOCS_PREFIX = 'mobyle'
-
- #########
- # #
-@@ -94,8 +94,8 @@
- from Mobyle.Converter import *
-
- DATA_CONVERTER={
-- 'Sequence': [ squizz_sequence('/path/to/squizz') ] ,
-- 'Alignment': [ squizz_alignment('/path/to/squizz')]
-+ 'Sequence': [ squizz_sequence('/usr/bin/squizz') ] ,
-+ 'Alignment': [ squizz_alignment('/usr/bin/squizz')]
- }
-
-
-@@ -150,7 +150,7 @@
- ## each element must be a valid path
- ## the element order is kept to build the final PATH ( the binary path is add before the canonical PATH )
-
--BINARY_PATH = ["/usr/local/bin"]
-+BINARY_PATH = ["/usr/local/bin","/usr/lib/phylip/bin"]
-
-
- #DATABANKS_CONFIG = {
Copied: trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/defaultconfig (from rev 13032, trunk/packages/mobyle/mobyle/trunk/debian/patches/defaultconfig)
===================================================================
--- trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/defaultconfig (rev 0)
+++ trunk/packages/mobyle/mobyle/tags/1.5+dfsg-1/debian/patches/defaultconfig 2013-02-18 11:11:42 UTC (rev 13033)
@@ -0,0 +1,42 @@
+Author: Olivier Sallou <olivier.sallou at irisa.fr>
+Description: Set default config for ready-to-run app
+Last-Update: 2011-08-09
+--- a/Example/Local/Config/Config.template.py
++++ b/Example/Local/Config/Config.template.py
+@@ -12,13 +12,13 @@
+ # the root url of mobyle
+ # warning: do NOT include the port number if it is 80, it is useless
+ # and creates problems on the server
+-ROOT_URL = "http://mydomain.fr:port"
++ROOT_URL = "http://localhost"
+
+ #base project url for mobyle cgis = ROOT_URL + CGI_PREFIX
+-CGI_PREFIX = 'cgi-bin/mobyle/xxxxx'
++CGI_PREFIX = 'cgi-bin/mobyle'
+
+ #base project url for mobyle htdocs = ROOT_URL + HTDOCS_PREFIX
+-HTDOCS_PREFIX = 'mobyle/xxxxx'
++HTDOCS_PREFIX = 'mobyle'
+
+ #########
+ # #
+@@ -96,8 +96,8 @@
+ from Mobyle.Converter import *
+
+ DATA_CONVERTER={
+- 'Sequence': [ squizz_sequence('/path/to/squizz') ] ,
+- 'Alignment': [ squizz_alignment('/path/to/squizz')]
++ 'Sequence': [ squizz_sequence('/usr/bin/squizz') ] ,
++ 'Alignment': [ squizz_alignment('/usr/bin/squizz')]
+ }
+
+
+@@ -152,7 +152,7 @@
+ ## each element must be a valid path
+ ## the element order is kept to build the final PATH ( the binary path is add before the canonical PATH )
+
+-BINARY_PATH = ["/usr/local/bin"]
++BINARY_PATH = ["/usr/local/bin","/usr/lib/phylip/bin"]
+
+
+ #DATABANKS_CONFIG = {
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