[med-svn] [Debian Wiki] Update of "DebianMed/PredictProtein" by LaszloKajan

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Wed Feb 27 21:29:33 UTC 2013


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The "DebianMed/PredictProtein" page has been changed by LaszloKajan:
http://wiki.debian.org/DebianMed/PredictProtein?action=diff&rev1=2&rev2=3

Comment:
added test run command

  
  == Installation ==
  {{{
- apt-get install predictprotein
+ $ apt-get install predictprotein
  }}}
  
  === Databases ===
@@ -27, +27 @@

  Create `/etc/predictproteinrc` with these values (replace `${YOUR_DATA_ROOT}` with the actual value):
  {{{
  # Override default predictprotein configuration in /usr/share/predictprotein/predictproteinrc.default with these values:
+ [predictprotein]
  bigblastdb=${YOUR_DATA_ROOT}/rostlab-data/data/big/big
  big80blastdb=${YOUR_DATA_ROOT}/rostlab-data/data/big/big_80
  prositedat=${YOUR_DATA_ROOT}/rostlab-data/data/prosite/prosite.dat
@@ -38, +39 @@

  }}}
  
  == Test run ==
+ Running this example will take a few minutes:
+ {{{
+ $ predictprotein --seqfile /usr/share/doc/predictprotein/examples/tquick.fasta --output-dir /tmp/pp
+ }}}
  
  == See also ==
- 
+  * [[https://rostlab.org/owiki/index.php/PredictProtein_-_Documentation|PredictProtein Documentation]]
  ----
  ## If this page belongs to an existing  Category, add it below.
  ## CategorySomething | CategoryAnother



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