[med-svn] r12769 - in trunk/packages/strap/trunk/debian: . bin

[Christoph Gille]

Author: christophgil-guest
Date: 2013-01-13 11:28:16 +0000 (Sun, 13 Jan 2013)
New Revision: 12769

Modified:
   trunk/packages/strap/trunk/debian/bin/strap_protein_alignment
   trunk/packages/strap/trunk/debian/changelog
   trunk/packages/strap/trunk/debian/control
   trunk/packages/strap/trunk/debian/strap.desktop
   trunk/packages/strap/trunk/debian/strap_protein_alignment.1
Log:
Added support for bash tabulator completion. Improved description.

Modified: trunk/packages/strap/trunk/debian/bin/strap_protein_alignment
===================================================================
--- trunk/packages/strap/trunk/debian/bin/strap_protein_alignment	2013-01-10 21:50:31 UTC (rev 12768)
+++ trunk/packages/strap/trunk/debian/bin/strap_protein_alignment	2013-01-13 11:28:16 UTC (rev 12769)
@@ -5,6 +5,7 @@
 
 
 
-/bin/sh /usr/bin/strap_base -probeWebProxy -stdout   "$@"
+/bin/sh /usr/bin/strap_base -probeWebProxy -stdout   -debianStrapBase=false "$@"
 
+
  
\ No newline at end of file

Modified: trunk/packages/strap/trunk/debian/changelog
===================================================================
--- trunk/packages/strap/trunk/debian/changelog	2013-01-10 21:50:31 UTC (rev 12768)
+++ trunk/packages/strap/trunk/debian/changelog	2013-01-13 11:28:16 UTC (rev 12769)
@@ -1,4 +1,4 @@
-strap (1-1) UNRELEASED; urgency=low
+strap (1) UNRELEASED; urgency=low
 
   * Initial release (Closes: #675202)
 

Modified: trunk/packages/strap/trunk/debian/control
===================================================================
--- trunk/packages/strap/trunk/debian/control	2013-01-10 21:50:31 UTC (rev 12768)
+++ trunk/packages/strap/trunk/debian/control	2013-01-13 11:28:16 UTC (rev 12769)
@@ -3,8 +3,8 @@
 Priority: extra
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Christoph Gille <christophgil at googlemail.com>
-Build-Depends: strap-base, texlive-latex-extra
-Standards-Version: 3.9.3
+Build-Depends: debhelper (>= 8), strap-base, texlive-latex-extra
+Standards-Version: 3.9.1
 Homepage: http://3d-alignment.eu/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/strap/trunk/
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/strap/trunk/
@@ -15,20 +15,19 @@
 Recommends:  muscle, mafft, t-coffee, probcons, dialign, dialign-t, amap-align, chemical-mime-data
 Suggests:
 Enhances: clustalw, tm-align, pymol, mustang, muscle, mafft, t-coffee, probcons, dialign, dialign-t, amap-align
-Description: Interactive alignment editor - aligning proteins by sequence and structure.  
- Strap can be used to display, edit and compute multiple sequence
- alignments, structure alignments and 3D-structure superpositions. It
- aids structure / function prediction and database searching.  Modern
- Bioinformatics tools can be used in an intuitive graphical user
- interface which features drag'n drop, context menus multiple item
- selection and tab-key word completion.  The sequence alignment view
- and the 3D-visualization (Pymol, JMol) are tightly linked.
- Information can be attached to residue selections such as free text
- notes, cross-references as well as 3D and 1D display style commands.
- The alignment can be exported in several formats: Multiple-Fasta,
- ClustalW, MSF, HSSP, Jalview.  Decorated alignments with residue
- annotations can be exported to PDF and HTML and can be edited with
- MS-Word or gwrite to create figures in publication quality - see
- http://3d-alignment.eu/ for details. Strap is scriptable and can be
- used by other programs to display sequence alignments and
- 3D-superpositions.  
\ No newline at end of file
+Description: Comfortable and intuitive protein alignment editor / viewer.
+ Strap is started from the menu "Science" in the "Applications" menu
+ or with the shell command strap_protein_alignment.  Alignments can be
+ manually edited or computed automatically using sequence and/or
+ structure based methods.  Information can be attached to proteins and
+ residue selections such as free text notes, balloon messages,
+ cross-references as well as 3D and PDF display styles.  Alignments
+ can be exported in several formats: Multiple-Fasta, ClustalW, MSF,
+ HSSP, Jalview.  Decorated alignments with residue annotations and
+ secondary structure cartoons can be exported to PDF, HTML and
+ Word-processors to create figures in publication quality - see
+ http://3d-alignment.eu/ for details. Strap is an integrated
+ environment for modern Bioinformatics tools like DAS sequence
+ features, 3D-visualization, structure prediction and Blast search. It
+ is scriptable and extendable and can be used by other programs to
+ display sequence alignments and 3D-superpositions.
\ No newline at end of file

Modified: trunk/packages/strap/trunk/debian/strap.desktop
===================================================================
--- trunk/packages/strap/trunk/debian/strap.desktop	2013-01-10 21:50:31 UTC (rev 12768)
+++ trunk/packages/strap/trunk/debian/strap.desktop	2013-01-13 11:28:16 UTC (rev 12769)
@@ -1,7 +1,7 @@
 [Desktop Entry]
 Version=1.0
 Name=Strap protein alignments
-Exec=/usr/bin/strap_protein_alignment
+Exec=/usr/bin/strap_protein_alignment -stdout=false
 Terminal=false
 Icon=strap
 Type=Application

Modified: trunk/packages/strap/trunk/debian/strap_protein_alignment.1
===================================================================
--- trunk/packages/strap/trunk/debian/strap_protein_alignment.1	2013-01-10 21:50:31 UTC (rev 12768)
+++ trunk/packages/strap/trunk/debian/strap_protein_alignment.1	2013-01-13 11:28:16 UTC (rev 12769)
@@ -374,5 +374,4 @@
 .BR seaview (1)
 .BR boxshade (1)
 .BR pymol (1)
-.BR openastex (1)
-.BR strap-text-viewer (1)
+