[med-svn] r12818 - in trunk/packages/ray-denovoassembler/trunk/debian: . source

[Andreas Tille]

Author: tille
Date: 2013-01-22 11:23:56 +0000 (Tue, 22 Jan 2013)
New Revision: 12818

Added:
   trunk/packages/ray-denovoassembler/trunk/debian/docs
   trunk/packages/ray-denovoassembler/trunk/debian/install
   trunk/packages/ray-denovoassembler/trunk/debian/source/
   trunk/packages/ray-denovoassembler/trunk/debian/source/format
Modified:
   trunk/packages/ray-denovoassembler/trunk/debian/changelog
   trunk/packages/ray-denovoassembler/trunk/debian/control
   trunk/packages/ray-denovoassembler/trunk/debian/rules
Log:
Merge some stuff from S?\195?\169bastien Boisvert <sebastien.boisvert.3 at ulaval.ca> I found on my harddisk ...


Modified: trunk/packages/ray-denovoassembler/trunk/debian/changelog
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/changelog	2013-01-21 22:25:58 UTC (rev 12817)
+++ trunk/packages/ray-denovoassembler/trunk/debian/changelog	2013-01-22 11:23:56 UTC (rev 12818)
@@ -1,5 +1,5 @@
-ray-denovoassembler (2.0.0-rc7-1) unstable; urgency=low
+ray (2.1.0-1) stable; urgency=low
 
-  * Initial release
+  * Initial Debian release
 
- -- Andreas Tille <tille at debian.org>  Tue, 29 May 2012 14:23:29 +0200
+ -- Sébastien Boisvert <sebastien.boisvert.3 at ulaval.ca>  Thu, 01 Nov 2012 14:52:24 -0400

Modified: trunk/packages/ray-denovoassembler/trunk/debian/control
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/control	2013-01-21 22:25:58 UTC (rev 12817)
+++ trunk/packages/ray-denovoassembler/trunk/debian/control	2013-01-22 11:23:56 UTC (rev 12818)
@@ -3,17 +3,25 @@
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
-Uploaders: Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 9)
-Standards-Version: 3.9.3
-Homepage: http://sourceforge.net/projects/denovoassembler/
+Uploaders: Andreas Tille <tille at debian.org>,
+ Sébastien Boisvert <sebastien.boisvert.3 at ulaval.ca>
+Build-Depends: debhelper (>= 9), zlib1g-dev, libbz2-dev, mpi-default-dev
+Standards-Version: 3.9.4
+Homepage: http://denovoassembler.sourceforge.net/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/ray-denovoassembler/trunk/
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/ray-denovoassembler/trunk/
 
 Package: ray-denovoassembler
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: computes de novo genome assemblies of next-gen sequencing data
- Ray is a paralleled computer-controlled software that computes de novo
- genome assemblies of next-gen sequencing data using message passing
- interface.
+Depends: ${shlibs:Depends}, ${misc:Depends},
+X-Comment: Check this: mpi-default-bin, zlib1g, libbz2-1.0
+Description: parallel de novo genome assemblies of next-gen sequencing data
+ Ray is a parallel software that computes de novo genome assemblies with...
+ next-generation sequencing data.
+ Ray is written in C++ and can run in parallel on numerous interconnected.
+ computers using the message-passing interface (MPI) standard.
+ Included:
+  * Ray de novo assembly of single genomes
+  * Ray Méta de novo assembly of metagenomes
+  * Ray Communities microbe abundance + taxonomic profiling
+  * Ray Ontologies gene ontology profiling

Added: trunk/packages/ray-denovoassembler/trunk/debian/docs
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/ray-denovoassembler/trunk/debian/docs	2013-01-22 11:23:56 UTC (rev 12818)
@@ -0,0 +1,7 @@
+Documentation
+AUTHORS
+MANUAL_PAGE.txt
+README.md
+RayPlatform/Documentation
+RayPlatform/README
+RayPlatform/lgpl-3.0.txt

Added: trunk/packages/ray-denovoassembler/trunk/debian/install
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/install	                        (rev 0)
+++ trunk/packages/ray-denovoassembler/trunk/debian/install	2013-01-22 11:23:56 UTC (rev 12818)
@@ -0,0 +1,2 @@
+Ray usr/bin
+scripts usr/share/ray

Modified: trunk/packages/ray-denovoassembler/trunk/debian/rules
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/rules	2013-01-21 22:25:58 UTC (rev 12817)
+++ trunk/packages/ray-denovoassembler/trunk/debian/rules	2013-01-22 11:23:56 UTC (rev 12818)
@@ -4,3 +4,9 @@
 
 %:
 	dh $@
+
+override_dh_auto_clean :
+	dh_auto_clean --  HAVE_LIBZ=y HAVE_LIBBZ2=y
+
+override_dh_auto_build :
+	dh_auto_build -- HAVE_LIBZ=y HAVE_LIBBZ2=y

Added: trunk/packages/ray-denovoassembler/trunk/debian/source/format
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/ray-denovoassembler/trunk/debian/source/format	2013-01-22 11:23:56 UTC (rev 12818)
@@ -0,0 +1 @@
+3.0 (quilt)