[med-svn] [SCM] samtools annotated tag, debian/0.1.19-1, created. debian/0.1.19-1

[Charles Plessy]

The annotated tag, debian/0.1.19-1 has been created
        at  74fa6743d595f03055b1b606ef83e5f666b8cb0b (tag)
   tagging  5761c3f1f6c34b8ec64df72fd5e317005807b5f7 (commit)
  replaces  debian/0.1.18-1
 tagged by  Charles Plessy
        on  Sat Mar 30 17:54:01 2013 +0900

- Shortlog ------------------------------------------------------------
samtools (0.1.19-1) unstable; urgency=low

  cb9bd50 Imported https://github.com/samtools/samtools/archive/0.1.19.tar.gz
  1e6d442 new tools ace2sam, bamcheck, plot-bamcheck, r2plot.lua, vcfutils.lua.
  2f2d5c5 debian/copyright: collapsed copyright notices from main holders.
  e194f9e Removed fix_float_tag.patch, corrected upstream.
  9c0e543 Refreshed patches.
  3e7e0ec Renamed no-pileup-tests.patch fix_example_makefile.patch.
  8d8550e example/Makefile: pass -lpthread when compiling calDepth.
  fc32243 harden by concatenating Debian's LDFLAGS and CPPFLAGS in CFLAGS.
  6f75b48 debian/control: normalised with cme.
  e13bb5e debian/control: normalised VCS URLs.
  a1b1b00 debian/control: deleted DM-Upload-Allowed field.
  ddcd54e Use NEWS as upstream changelog.
  81ad760 Conforms to Policy version 3.9.4.

 -- Charles Plessy <plessy at debian.org>  Sat, 30 Mar 2013 17:31:47 +0900
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Andreas Tille (1):
      debian/upstream: replace a perfectly valid BibTeX entry which happens to cause problems in the replacement algorith for the tasks pages written by Michael Banck

Charles Plessy (29):
      Starting the work on next package update.
      Mention ‘SAMtools’ in libbam-dev's description, to make it easier to find with apt-cache.
      Do not compress the example binary alignment file.
      Renamed debian/upstream-metadata.yaml to debian/upstream.
      Moved DOI and PubMed to the Reference namespace.
      Pass build flaggs set by dpkg-buildflags via Debhelper.
      Build-depend on	Debhelper 9 (see e6882df5b3e4a66100acf69c8f0f213208d16c92).
      Bash completion, see https://github.com/arq5x/bash_completion.
      Normalised with config-model.
      Include 7 digits of the commit id in the changelog entry.
      Imported Upstream version 0.1.19
      Merge tag 'upstream/0.1.19'
      New upstream release, no new license nor copyright statements.
      Binary files (re-)introduced by the update.
      Collapsed copyright notices from main holders.
      Normalised with cme (from the libconfig-model-perl package).
      Deleted DM-Upload-Allowed field.
      Conforms to Policy version 3.9.4.
      Removed fix_float_tag.patch, corrected upstream.
      Refreshed patches.
      Rename no-pileup-tests.patch fix_example_makefile.patch.
      Pass -lpthread when compiling calDepth.
      Harden by concatenating Debian's LDFLAGS and CPPFLAGS in CFLAGS.
      Moved to GitHub.
      New tools ace2sam, bamcheck, plot-bamcheck, r2plot.lua and vcfutils.lua.
      URL to the latest upstream changelog.
      Normalised VCS URLs.
      Use NEWS as upstream changelog.
      samtools (0.1.19-1) unstable; urgency=low

Dominique Belhachemi (1):
      added 3 bug fixes

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-- 
Processing of sequence alignments in SAM and BAM formats.