[med-svn] [SCM] picard-tools branch, master, updated. debian/1.82-2-18-ge2c1be2

[Olivier Sallou]

The following commit has been merged in the master branch:
commit a29b7931e5a0f9265fb0fed49290d3b1b5c908cd
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Wed May 1 09:33:23 2013 +0200

    add/update classpath

diff --git a/debian/bin/picard-tools b/debian/bin/picard-tools
index 2bd95d5..e892287 100755
--- a/debian/bin/picard-tools
+++ b/debian/bin/picard-tools
@@ -62,4 +62,4 @@ EOF
 esac
 
 p=/usr/share/java
-exec java -XX:MaxPermSize=256m -cp $p/jbzip2.jar:$p/picard.jar:$p/sam.jar $main "$@"
+exec java -XX:MaxPermSize=256m -cp $p/jbzip2.jar:$p/picard.jar:$p/sam.jar:$p/cofoja.jar:$p/commons-jexl2.jar $main "$@"
diff --git a/debian/picard-tools.classpath b/debian/picard-tools.classpath
new file mode 100644
index 0000000..7034c2e
--- /dev/null
+++ b/debian/picard-tools.classpath
@@ -0,0 +1 @@
+usr/share/java/commons-jexl2.jar usr/share/java/cofoja.jar usr/share/java/jbzip2.jar usr/share/java/sam.jar

-- 
manipulate SAM and BAM files