[med-svn] [SCM] pvclust branch, meta, updated. 296dc38465020c1d6b507a885d95aef2ae6c2a7c
Charles Plessy
plessy at debian.org
Mon May 6 23:38:17 UTC 2013
The following commit has been merged in the meta branch:
commit 296dc38465020c1d6b507a885d95aef2ae6c2a7c
Author: Charles Plessy <plessy at debian.org>
Date: Tue May 7 08:37:34 2013 +0900
pvclust (1.2-2-2) unstable; urgency=low
a9558c7 Removed obsolete DM-Upload-Allowed field.
bc6c4f8 Normalised Debian copyright file with config-model-edit.
9fe7486 Use Debhelper 9.
e07ef85 Acquire R:Depends directly from r-base-dev.
1382359 Include commit IDs in Debian changelog.
9f1b846 Normalised debian/control with config-model-edit.
9f68ec9 Remove version constraint on R , satisfied even in oldstable.
832f81c Documented bibliographic and other upstream information.
d68e1f4 Removed redundant Recommends statement on MASS and snow.
7320ae7 Normalised VCS URLs following Lintian's standard.
1440045 Conforms to Policy version 3.9.4.
-- Charles Plessy <plessy at debian.org> Tue, 07 May 2013 08:23:35 +0900
diff --git a/amd64.changes b/amd64.changes
index b4148bb..58d6864 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,52 +2,58 @@
Hash: SHA256
Format: 1.8
-Date: Fri, 01 Jul 2011 14:32:30 +0900
+Date: Tue, 07 May 2013 08:23:35 +0900
Source: pvclust
Binary: r-cran-pvclust
Architecture: source all
-Version: 1.2-2-1
+Version: 1.2-2-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-cran-pvclust - Hierarchical Clustering with P-Values via Multiscale Bootstrap
-Closes: 632002
Changes:
- pvclust (1.2-2-1) unstable; urgency=low
+ pvclust (1.2-2-2) unstable; urgency=low
.
- * Initial release (Closes: #632002)
+ a9558c7 Removed obsolete DM-Upload-Allowed field.
+ bc6c4f8 Normalised Debian copyright file with config-model-edit.
+ 9fe7486 Use Debhelper 9.
+ e07ef85 Acquire R:Depends directly from r-base-dev.
+ 1382359 Include commit IDs in Debian changelog.
+ 9f1b846 Normalised debian/control with config-model-edit.
+ 9f68ec9 Remove version constraint on R , satisfied even in oldstable.
+ 832f81c Documented bibliographic and other upstream information.
+ d68e1f4 Removed redundant Recommends statement on MASS and snow.
+ 7320ae7 Normalised VCS URLs following Lintian's standard.
+ 1440045 Conforms to Policy version 3.9.4.
Checksums-Sha1:
- 3f3e50e698b8ad2872617f263ed687ddb99db741 1899 pvclust_1.2-2-1.dsc
- 6351d4fc784d7a01bcaab91249459df6a2c3f461 101062 pvclust_1.2-2.orig.tar.gz
- a2e062502ed9b8631afc8d89d893b679fdc7e75a 1584 pvclust_1.2-2-1.diff.gz
- e6b0b8581f66416216814e052d89e90b32c2368e 140700 r-cran-pvclust_1.2-2-1_all.deb
+ 0e4307acd5f1ed8a8399454e516862702336b5a8 1929 pvclust_1.2-2-2.dsc
+ 8cb82d64052284297f90cbb97936bdccae12988c 2082 pvclust_1.2-2-2.diff.gz
+ 0ecc6466566ca58fda22b85cd31dfd19bf51031d 142436 r-cran-pvclust_1.2-2-2_all.deb
Checksums-Sha256:
- 2eab1138c373e141c50e1fac2c5397c50a0865bae6cabe216f0105ca1decf2e0 1899 pvclust_1.2-2-1.dsc
- a5a9a2ff76429d75e1171497748f520dcb50fe600b9160d2ceba5d4ae6e65894 101062 pvclust_1.2-2.orig.tar.gz
- 6e10de15ad50051d39620dce2d37b917dba6114891a9523387a9e6ce8c10e55e 1584 pvclust_1.2-2-1.diff.gz
- a9cee4248b7caf7dc2728f2909494e89c914fa525e9d9cf2d0a96081328e7080 140700 r-cran-pvclust_1.2-2-1_all.deb
+ aacab0bd6e8e2b277f9f59745046f3e712092cf26ab7144e70885d7fe70f6e64 1929 pvclust_1.2-2-2.dsc
+ d32a292b2f244a955602e11d60da9d303271bdf17f899d1c0cba33f564e8b5dd 2082 pvclust_1.2-2-2.diff.gz
+ 0691c8135305e6be02aba3431a2fc9650ff6c2a863222214edf0794e9995ab3b 142436 r-cran-pvclust_1.2-2-2_all.deb
Files:
- f4ddba7f28bb51e34199b32a78e50853 1899 gnu-r optional pvclust_1.2-2-1.dsc
- 7f17a660396ffad685177c0b78f06ec7 101062 gnu-r optional pvclust_1.2-2.orig.tar.gz
- 1929b105f04796a485144f73406d98b0 1584 gnu-r optional pvclust_1.2-2-1.diff.gz
- 978c7d30a7be2f2259184fc5977a43b7 140700 gnu-r optional r-cran-pvclust_1.2-2-1_all.deb
+ a1aeea702dbe9ca440388dcda6e8f4d0 1929 gnu-r optional pvclust_1.2-2-2.dsc
+ b13cb13420ff4f3950d76ac5fe3f355a 2082 gnu-r optional pvclust_1.2-2-2.diff.gz
+ f26b841e7d0bccd700c5acee014e1c22 142436 gnu-r optional r-cran-pvclust_1.2-2-2_all.deb
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diff --git a/amd64.log b/amd64.log
index febec10..c4c8058 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,26 +1,37 @@
-sbuild (Debian sbuild) 0.62.4 (25 Jun 2011) on anx191
+sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on aqwa.igloo
╔══════════════════════════════════════════════════════════════════════════════╗
-║ pvclust 1.2-2-1 (amd64) 01 Jul 2011 14:32 ║
+║ pvclust 1.2-2-2 (amd64) 07 mai 2013 08:25 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: pvclust
-Version: 1.2-2-1
-Source Version: 1.2-2-1
+Version: 1.2-2-2
+Source Version: 1.2-2-2
Distribution: unstable
-Architecture: amd64
+Machine Architecture: amd64
+Host Architecture: amd64
+Build Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/pvclust-qjFvcO/pvclust-1.2-2' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/pvclust-qjFvcO' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-ed9d06f9-3304-4cf9-b493-f4d334f39fe0' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/pvclust-jMFX70/pvclust-1.2-2' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/pvclust-jMFX70' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-40eab5d4-f136-4f60-90fd-e8357a0859da' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
-Hit http://ftp.jp.debian.org sid InRelease
-Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
-Hit http://ftp.jp.debian.org sid/main TranslationIndex
+Get:1 ftp://ftp.jp.debian.org sid Release.gpg [836 B]
+Get:2 ftp://ftp.jp.debian.org sid Release [203 kB]
+Get:3 ftp://ftp.jp.debian.org sid/main Sources/DiffIndex [7876 B]
+Get:4 ftp://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex [7876 B]
+Get:5 ftp://ftp.jp.debian.org sid/main Translation-en/DiffIndex [7876 B]
+Get:6 ftp://ftp.jp.debian.org sid/main 2013-05-06-2019.21.pdiff [22.7 kB]
+Get:7 ftp://ftp.jp.debian.org sid/main 2013-05-06-2019.21.pdiff [22.7 kB]
+Get:8 ftp://ftp.jp.debian.org sid/main amd64 2013-05-06-2019.21.pdiff [22.6 kB]
+Get:9 ftp://ftp.jp.debian.org sid/main 2013-05-06-2019.21.pdiff [1594 B]
+Get:10 ftp://ftp.jp.debian.org sid/main amd64 2013-05-06-2019.21.pdiff [22.6 kB]
+Get:11 ftp://ftp.jp.debian.org sid/main 2013-05-06-2019.21.pdiff [1594 B]
+Fetched 274 kB in 5s (51.4 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
@@ -35,14 +46,14 @@ Reading state information...
Local sources
─────────────
-pvclust_1.2-2-1.dsc exists in .; copying to chroot
+pvclust_1.2-2-2.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-OPmmdP/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-6tElDu/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -54,37 +65,19 @@ Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
-sbuild-build-depends-core-dummy is already the newest version.
-The following packages were automatically installed and are no longer required:
- libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
- libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
- liboro-java liblcms1 libunistring0 libxerces2-java debhelper libwrap0
- libavalon-framework-java libatk1.0-data ttf-dejavu-core libx11-data
- libxalan2-java libdbus-1-3 unzip libpipeline1 libcap2 java-common po-debconf
- libpcre3 libnspr4-0d groff-base gettext-base java-wrappers
- default-jre-headless libcairo2 libgnutls26 libcommons-logging-java
- intltool-debian libtasn1-3 openjdk-6-jre-lib libfreetype6 libthai-data
- shared-mime-info libglib2.0-0 libexpat1 libcommons-math-java libdatrie1
- openjdk-6-jre-headless fontconfig libavahi-common-data libsam-java
- libgdk-pixbuf2.0-0 gettext libxcb1 ant libaccess-bridge-java-jni default-jdk
- libxau6 libpixman-1-0 libcups2 default-jre libxinerama1 libkrb5support0
- libgif4 libcommons-net-java libxft2 fontconfig-config libbsf-java libcroco3
- libxml-commons-external-java tzdata-java libice6 libxdmcp6 libgcrypt11
- libthai0 libxml2 libkeyutils1 file libasound2 libflac8 libxrender1
- libconcurrent-java libvorbisenc2 libjama-java ucf libasyncns0 libtiff4
- libjasper1 libswing-layout-java libjpeg62 libxtst6 libavahi-client3
- x11-common libx11-6 man-db libfontconfig1 ca-certificates-java html2text
- openssl libhamcrest-java libpango1.0-0 libsm6 libpulse0 libxdamage1
- libxcb-render0 libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk
- libbatik-java libxcursor1 libxcb-shm0 libjlibeps-java libxext6 openjdk-6-jre
- libavahi-common3 liblog4j1.2-java libcommons-io-java libxrandr2 libnss3-1d
- ca-certificates libsndfile1 libsqlite3-0 libgtk2.0-0 libmagic1 libssl1.0.0
- libgpg-error0 libogg0
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10.0)
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10.0)
-dpkg-deb: building package `sbuild-build-depends-pvclust-dummy' in `/«BUILDDIR»/resolver-thvOPD/apt_archive/sbuild-build-depends-pvclust-dummy.deb'.
+The following NEW packages will be installed:
+ sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/720 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 10982 files and directories currently installed.)
+Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), r-base-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), r-base-dev
+dpkg-deb: building package `sbuild-build-depends-pvclust-dummy' in `/«BUILDDIR»/resolver-JYtadl/apt_archive/sbuild-build-depends-pvclust-dummy.deb'.
OK
Reading package lists...
@@ -96,157 +89,471 @@ Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
- libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
- liboro-java liblcms1 libxerces2-java libwrap0 libavalon-framework-java
- libatk1.0-data libxalan2-java libdbus-1-3 libcap2 java-common libnspr4-0d
- java-wrappers default-jre-headless libgnutls26 libcommons-logging-java
- libtasn1-3 openjdk-6-jre-lib libcommons-math-java openjdk-6-jre-headless
- libavahi-common-data libsam-java libgdk-pixbuf2.0-0 ant
- libaccess-bridge-java-jni default-jdk libcups2 default-jre libxinerama1
- libkrb5support0 libgif4 libcommons-net-java libbsf-java
- libxml-commons-external-java tzdata-java libgcrypt11 libkeyutils1 libasound2
- libflac8 libconcurrent-java libvorbisenc2 libjama-java libasyncns0
- libjasper1 libswing-layout-java libxtst6 libavahi-client3
- ca-certificates-java openssl libhamcrest-java libpulse0 libxdamage1
- libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk libbatik-java libxcursor1
- libjlibeps-java openjdk-6-jre libavahi-common3 liblog4j1.2-java
- libcommons-io-java libxrandr2 libnss3-1d ca-certificates libsndfile1
- libsqlite3-0 libgtk2.0-0 libssl1.0.0 libgpg-error0 libogg0
-Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- cdbs dpatch gfortran gfortran-4.6 libblas-dev libblas3gf libbz2-dev
- libgfortran3 libjpeg62-dev liblapack-dev liblapack3gf libncurses5-dev
- libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpng12-dev
- libreadline-dev libreadline6-dev libxss1 libxt6 r-base-core r-base-dev
- tcl8.5 tk8.5 xdg-utils zip zlib1g-dev
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.7 groff-base html2text intltool-debian
+ libasprintf-dev libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
+ libcroco3 libdatrie1 libdrm-nouveau1a libdrm2 libegl1-mesa libexpat1 libffi5
+ libfontconfig1 libfreetype6 libgbm1 libgettextpo-dev libgettextpo0
+ libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libudev0
+ libunistring0 libwayland0 libx11-6 libx11-data libx11-xcb1 libxau6
+ libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-shape0 libxcb-shm0
+ libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2
+ libxml2 libxrender1 libxss1 libxt6 libxxf86vm1 man-db po-debconf r-base-core
+ r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
Suggested packages:
- devscripts curl gfortran-multilib gfortran-doc gfortran-4.6-multilib
- gfortran-4.6-doc libgfortran3-dbg ncurses-doc ess r-doc-info r-doc-pdf
- r-mathlib r-base-html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.7-multilib gfortran-4.7-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base
+ texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
+ texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
+ texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils r-recommended r-doc-html xterm x-terminal-emulator
- libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ autotools-dev curl wget lynx-cur autopoint libegl1-mesa-drivers
+ libgl1-mesa-dri libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator
+ libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
+ x11-xserver-utils
The following NEW packages will be installed:
- cdbs dpatch gfortran gfortran-4.6 libblas-dev libblas3gf libbz2-dev
- libgfortran3 libjpeg62-dev liblapack-dev liblapack3gf libncurses5-dev
- libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpng12-dev
- libreadline-dev libreadline6-dev libxss1 libxt6 r-base-core r-base-dev
- sbuild-build-depends-pvclust-dummy tcl8.5 tk8.5 xdg-utils zip zlib1g-dev
+ bsdmainutils cdbs debhelper file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.7 groff-base html2text intltool-debian
+ libasprintf-dev libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
+ libcroco3 libdatrie1 libdrm-nouveau1a libdrm2 libegl1-mesa libexpat1 libffi5
+ libfontconfig1 libfreetype6 libgbm1 libgettextpo-dev libgettextpo0
+ libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libice6 libjbig0
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libudev0
+ libunistring0 libwayland0 libx11-6 libx11-data libx11-xcb1 libxau6
+ libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-shape0 libxcb-shm0
+ libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2
+ libxml2 libxrender1 libxss1 libxt6 libxxf86vm1 man-db po-debconf r-base-core
+ r-base-dev sbuild-build-depends-pvclust-dummy tcl8.5 tk8.5 ttf-dejavu-core
+ ucf unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
+Need to get 71.4 MB/72.3 MB of archives.
+After this operation, 170 MB of additional disk space will be used.
+Get:1 ftp://ftp.jp.debian.org/debian/ sid/main libpipeline1 amd64 1.2.3-1 [40.5 kB]
+Get:2 ftp://ftp.jp.debian.org/debian/ sid/main libudev0 amd64 175-7.2 [126 kB]
+Get:3 ftp://ftp.jp.debian.org/debian/ sid/main groff-base amd64 1.22.2-2 [743 kB]
+Get:4 ftp://ftp.jp.debian.org/debian/ sid/main bsdmainutils amd64 9.0.5 [211 kB]
+Get:5 ftp://ftp.jp.debian.org/debian/ sid/main man-db amd64 2.6.3-3 [898 kB]
+Get:6 ftp://ftp.jp.debian.org/debian/ sid/main libasprintf0c2 amd64 0.18.1.1-10 [27.2 kB]
+Get:7 ftp://ftp.jp.debian.org/debian/ sid/main libmagic1 amd64 1:5.14-1 [217 kB]
+Get:8 ftp://ftp.jp.debian.org/debian/ sid/main libpcre3 amd64 1:8.31-2 [247 kB]
+Get:9 ftp://ftp.jp.debian.org/debian/ sid/main libxml2 amd64 2.8.0+dfsg1-7+nmu1 [904 kB]
+Get:10 ftp://ftp.jp.debian.org/debian/ sid/main libdrm2 amd64 2.4.40-1~deb7u2 [459 kB]
+Get:11 ftp://ftp.jp.debian.org/debian/ sid/main libdrm-nouveau1a amd64 2.4.40-1~deb7u2 [448 kB]
+Get:12 ftp://ftp.jp.debian.org/debian/ sid/main libexpat1 amd64 2.1.0-1 [141 kB]
+Get:13 ftp://ftp.jp.debian.org/debian/ sid/main libgbm1 amd64 8.0.5-4 [9689 kB]
+Get:14 ftp://ftp.jp.debian.org/debian/ sid/main libwayland0 amd64 0.85.0-2 [102 kB]
+Get:15 ftp://ftp.jp.debian.org/debian/ sid/main libxau6 amd64 1:1.0.7-1 [18.8 kB]
+Get:16 ftp://ftp.jp.debian.org/debian/ sid/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB]
+Get:17 ftp://ftp.jp.debian.org/debian/ sid/main libxcb1 amd64 1.8.1-2 [50.1 kB]
+Get:18 ftp://ftp.jp.debian.org/debian/ sid/main libx11-data all 2:1.5.0-1 [189 kB]
+Get:19 ftp://ftp.jp.debian.org/debian/ sid/main libx11-6 amd64 2:1.5.0-1 [901 kB]
+Get:20 ftp://ftp.jp.debian.org/debian/ sid/main libx11-xcb1 amd64 2:1.5.0-1 [139 kB]
+Get:21 ftp://ftp.jp.debian.org/debian/ sid/main libxcb-dri2-0 amd64 1.8.1-2 [12.4 kB]
+Get:22 ftp://ftp.jp.debian.org/debian/ sid/main libxcb-render0 amd64 1.8.1-2 [18.5 kB]
+Get:23 ftp://ftp.jp.debian.org/debian/ sid/main libxcb-shape0 amd64 1.8.1-2 [11.0 kB]
+Get:24 ftp://ftp.jp.debian.org/debian/ sid/main libxcb-xfixes0 amd64 1.8.1-2 [14.5 kB]
+Get:25 ftp://ftp.jp.debian.org/debian/ sid/main libegl1-mesa amd64 8.0.5-4 [79.0 kB]
+Get:26 ftp://ftp.jp.debian.org/debian/ sid/main libfreetype6 amd64 2.4.9-1.1 [451 kB]
+Get:27 ftp://ftp.jp.debian.org/debian/ sid/main ttf-dejavu-core all 2.33-3 [1021 kB]
+Get:28 ftp://ftp.jp.debian.org/debian/ sid/main fontconfig-config all 2.9.0-7.1 [233 kB]
+Get:29 ftp://ftp.jp.debian.org/debian/ sid/main libfontconfig1 amd64 2.9.0-7.1 [300 kB]
+Get:30 ftp://ftp.jp.debian.org/debian/ sid/main libglapi-mesa amd64 8.0.5-4 [47.2 kB]
+Get:31 ftp://ftp.jp.debian.org/debian/ sid/main libxcb-glx0 amd64 1.8.1-2 [32.1 kB]
+Get:32 ftp://ftp.jp.debian.org/debian/ sid/main libxext6 amd64 2:1.3.1-2 [55.3 kB]
+Get:33 ftp://ftp.jp.debian.org/debian/ sid/main libxxf86vm1 amd64 1:1.1.2-1 [19.0 kB]
+Get:34 ftp://ftp.jp.debian.org/debian/ sid/main libgl1-mesa-glx amd64 8.0.5-4 [134 kB]
+Get:35 ftp://ftp.jp.debian.org/debian/ sid/main libpixman-1-0 amd64 0.26.0-4 [427 kB]
+Get:36 ftp://ftp.jp.debian.org/debian/ sid/main libpng12-0 amd64 1.2.49-4 [190 kB]
+Get:37 ftp://ftp.jp.debian.org/debian/ sid/main libxcb-shm0 amd64 1.8.1-2 [10.3 kB]
+Get:38 ftp://ftp.jp.debian.org/debian/ sid/main libxrender1 amd64 1:0.9.7-1 [32.2 kB]
+Get:39 ftp://ftp.jp.debian.org/debian/ sid/main libcairo2 amd64 1.12.14-2 [1045 kB]
+Get:40 ftp://ftp.jp.debian.org/debian/ sid/main libglib2.0-0 amd64 2.33.12+really2.32.4-5 [1838 kB]
+Get:41 ftp://ftp.jp.debian.org/debian/ sid/main libcroco3 amd64 0.6.6-2 [134 kB]
+Get:42 ftp://ftp.jp.debian.org/debian/ sid/main libdatrie1 amd64 0.2.5-3 [28.6 kB]
+Get:43 ftp://ftp.jp.debian.org/debian/ sid/main libgettextpo0 amd64 0.18.1.1-10 [145 kB]
+Get:44 ftp://ftp.jp.debian.org/debian/ sid/main libgfortran3 amd64 4.7.2-5 [351 kB]
+Get:45 ftp://ftp.jp.debian.org/debian/ sid/main x11-common all 1:7.7+3 [284 kB]
+Get:46 ftp://ftp.jp.debian.org/debian/ sid/main libice6 amd64 2:1.0.8-2 [63.1 kB]
+Get:47 ftp://ftp.jp.debian.org/debian/ sid/main libjpeg8 amd64 8d-1 [134 kB]
+Get:48 ftp://ftp.jp.debian.org/debian/ sid/main libthai-data all 0.1.18-2 [154 kB]
+Get:49 ftp://ftp.jp.debian.org/debian/ sid/main libthai0 amd64 0.1.18-2 [42.3 kB]
+Get:50 ftp://ftp.jp.debian.org/debian/ sid/main libxft2 amd64 2.3.1-1 [61.0 kB]
+Get:51 ftp://ftp.jp.debian.org/debian/ sid/main fontconfig amd64 2.9.0-7.1 [348 kB]
+Get:52 ftp://ftp.jp.debian.org/debian/ sid/main libpango1.0-0 amd64 1.30.0-1 [461 kB]
+Get:53 ftp://ftp.jp.debian.org/debian/ sid/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB]
+Get:54 ftp://ftp.jp.debian.org/debian/ sid/main libpcrecpp0 amd64 1:8.31-2 [128 kB]
+Get:55 ftp://ftp.jp.debian.org/debian/ sid/main libsm6 amd64 2:1.2.1-2 [34.2 kB]
+Get:56 ftp://ftp.jp.debian.org/debian/ sid/main libjbig0 amd64 2.0-2 [32.2 kB]
+Get:57 ftp://ftp.jp.debian.org/debian/ sid/main libtiff5 amd64 4.0.2-6 [234 kB]
+Get:58 ftp://ftp.jp.debian.org/debian/ sid/main libxss1 amd64 1:1.2.2-1 [17.5 kB]
+Get:59 ftp://ftp.jp.debian.org/debian/ sid/main libxt6 amd64 1:1.1.3-1 [211 kB]
+Get:60 ftp://ftp.jp.debian.org/debian/ sid/main file amd64 1:5.14-1 [54.1 kB]
+Get:61 ftp://ftp.jp.debian.org/debian/ sid/main gettext-base amd64 0.18.1.1-10 [154 kB]
+Get:62 ftp://ftp.jp.debian.org/debian/ sid/main cdbs all 0.4.121 [80.5 kB]
+Get:63 ftp://ftp.jp.debian.org/debian/ sid/main libasprintf-dev amd64 0.18.1.1-10 [26.8 kB]
+Get:64 ftp://ftp.jp.debian.org/debian/ sid/main libgettextpo-dev amd64 0.18.1.1-10 [184 kB]
+Get:65 ftp://ftp.jp.debian.org/debian/ sid/main gettext amd64 0.18.1.1-10 [1815 kB]
+Get:66 ftp://ftp.jp.debian.org/debian/ sid/main debhelper all 9.20130504 [706 kB]
+Get:67 ftp://ftp.jp.debian.org/debian/ sid/main gfortran-4.7 amd64 4.7.2-5 [6173 kB]
+Get:68 ftp://ftp.jp.debian.org/debian/ sid/main gfortran amd64 4:4.7.2-1 [1130 B]
+Get:69 ftp://ftp.jp.debian.org/debian/ sid/main libblas3 amd64 1.2.20110419-5 [293 kB]
+Get:70 ftp://ftp.jp.debian.org/debian/ sid/main libblas-dev amd64 1.2.20110419-5 [312 kB]
+Get:71 ftp://ftp.jp.debian.org/debian/ sid/main libbz2-dev amd64 1.0.6-4 [32.8 kB]
+Get:72 ftp://ftp.jp.debian.org/debian/ sid/main libjpeg8-dev amd64 8d-1 [242 kB]
+Get:73 ftp://ftp.jp.debian.org/debian/ sid/main liblapack3 amd64 3.4.2+dfsg-1 [5088 kB]
+Get:74 ftp://ftp.jp.debian.org/debian/ sid/main liblapack-dev amd64 3.4.2+dfsg-1 [5602 kB]
+Get:75 ftp://ftp.jp.debian.org/debian/ sid/main libtinfo-dev amd64 5.9-10 [105 kB]
+Get:76 ftp://ftp.jp.debian.org/debian/ sid/main libncurses5-dev amd64 5.9-10 [223 kB]
+Get:77 ftp://ftp.jp.debian.org/debian/ sid/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB]
+Get:78 ftp://ftp.jp.debian.org/debian/ sid/main libpcre3-dev amd64 1:8.31-2 [356 kB]
+Get:79 ftp://ftp.jp.debian.org/debian/ sid/main zlib1g-dev amd64 1:1.2.7.dfsg-13 [215 kB]
+Get:80 ftp://ftp.jp.debian.org/debian/ sid/main libpng12-dev amd64 1.2.49-4 [267 kB]
+Get:81 ftp://ftp.jp.debian.org/debian/ sid/main libreadline6-dev amd64 6.2+dfsg-0.1 [193 kB]
+Get:82 ftp://ftp.jp.debian.org/debian/ sid/main libreadline-dev amd64 6.2+dfsg-0.1 [896 B]
+Get:83 ftp://ftp.jp.debian.org/debian/ sid/main zip amd64 3.0-7 [336 kB]
+Get:84 ftp://ftp.jp.debian.org/debian/ sid/main unzip amd64 6.0-9 [194 kB]
+Get:85 ftp://ftp.jp.debian.org/debian/ sid/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
+Get:86 ftp://ftp.jp.debian.org/debian/ sid/main tcl8.5 amd64 8.5.11-2 [1627 kB]
+Get:87 ftp://ftp.jp.debian.org/debian/ sid/main tk8.5 amd64 8.5.11-2 [1189 kB]
+Get:88 ftp://ftp.jp.debian.org/debian/ sid/main r-base-core amd64 3.0.0-2 [21.4 MB]
+Get:89 ftp://ftp.jp.debian.org/debian/ sid/main r-base-dev all 3.0.0-2 [3900 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/36.5 MB of archives.
-After this operation, 87.3 MB of additional disk space will be used.
-Selecting previously deselected package libgfortran3.
-(Reading database ... 16394 files and directories currently installed.)
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-1_amd64.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_amd64.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-1_amd64.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-6_amd64.deb) ...
-Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ...
-Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_amd64.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_amd64.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_amd64.deb) ...
-Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_amd64.deb) ...
-Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_amd64.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_amd64.deb) ...
-Selecting previously deselected package libpaper1.
-Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_amd64.deb) ...
-Selecting previously deselected package libpaper-utils.
-Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_amd64.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_amd64.deb) ...
-Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_amd64.deb) ...
-Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
-Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_amd64.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_amd64.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_amd64.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_amd64.deb) ...
-Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-4_amd64.deb) ...
-Selecting previously deselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_amd64.deb) ...
-Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_amd64.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-4_amd64.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-4_all.deb) ...
-Selecting previously deselected package sbuild-build-depends-pvclust-dummy.
+Fetched 71.4 MB in 41s (1711 kB/s)
+Selecting previously unselected package libpipeline1:amd64.
+(Reading database ... 10982 files and directories currently installed.)
+Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.3-1_amd64.deb) ...
+Selecting previously unselected package libudev0:amd64.
+Unpacking libudev0:amd64 (from .../libudev0_175-7.2_amd64.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-2_amd64.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_amd64.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.3-3_amd64.deb) ...
+Selecting previously unselected package libasprintf0c2:amd64.
+Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-10_amd64.deb) ...
+Selecting previously unselected package libmagic1:amd64.
+Unpacking libmagic1:amd64 (from .../libmagic1_1%3a5.14-1_amd64.deb) ...
+Selecting previously unselected package libpcre3:amd64.
+Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.31-2_amd64.deb) ...
+Selecting previously unselected package libxml2:amd64.
+Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-7+nmu1_amd64.deb) ...
+Selecting previously unselected package libdrm2:amd64.
+Unpacking libdrm2:amd64 (from .../libdrm2_2.4.40-1~deb7u2_amd64.deb) ...
+Selecting previously unselected package libdrm-nouveau1a:amd64.
+Unpacking libdrm-nouveau1a:amd64 (from .../libdrm-nouveau1a_2.4.40-1~deb7u2_amd64.deb) ...
+Selecting previously unselected package libexpat1:amd64.
+Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1_amd64.deb) ...
+Selecting previously unselected package libffi5:amd64.
+Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ...
+Selecting previously unselected package libgbm1:amd64.
+Unpacking libgbm1:amd64 (from .../libgbm1_8.0.5-4_amd64.deb) ...
+Selecting previously unselected package libwayland0.
+Unpacking libwayland0 (from .../libwayland0_0.85.0-2_amd64.deb) ...
+Selecting previously unselected package libxau6:amd64.
+Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ...
+Selecting previously unselected package libxdmcp6:amd64.
+Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ...
+Selecting previously unselected package libxcb1:amd64.
+Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-2_amd64.deb) ...
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ...
+Selecting previously unselected package libx11-6:amd64.
+Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.5.0-1_amd64.deb) ...
+Selecting previously unselected package libx11-xcb1:amd64.
+Unpacking libx11-xcb1:amd64 (from .../libx11-xcb1_2%3a1.5.0-1_amd64.deb) ...
+Selecting previously unselected package libxcb-dri2-0:amd64.
+Unpacking libxcb-dri2-0:amd64 (from .../libxcb-dri2-0_1.8.1-2_amd64.deb) ...
+Selecting previously unselected package libxcb-render0:amd64.
+Unpacking libxcb-render0:amd64 (from .../libxcb-render0_1.8.1-2_amd64.deb) ...
+Selecting previously unselected package libxcb-shape0:amd64.
+Unpacking libxcb-shape0:amd64 (from .../libxcb-shape0_1.8.1-2_amd64.deb) ...
+Selecting previously unselected package libxcb-xfixes0:amd64.
+Unpacking libxcb-xfixes0:amd64 (from .../libxcb-xfixes0_1.8.1-2_amd64.deb) ...
+Selecting previously unselected package libegl1-mesa:amd64.
+Unpacking libegl1-mesa:amd64 (from .../libegl1-mesa_8.0.5-4_amd64.deb) ...
+Selecting previously unselected package libfreetype6:amd64.
+Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1.1_amd64.deb) ...
+Selecting previously unselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
+Moving old data out of the way
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-3_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ...
+Selecting previously unselected package libfontconfig1:amd64.
+Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.9.0-7.1_amd64.deb) ...
+Selecting previously unselected package libglapi-mesa:amd64.
+Unpacking libglapi-mesa:amd64 (from .../libglapi-mesa_8.0.5-4_amd64.deb) ...
+Selecting previously unselected package libxcb-glx0:amd64.
+Unpacking libxcb-glx0:amd64 (from .../libxcb-glx0_1.8.1-2_amd64.deb) ...
+Selecting previously unselected package libxfixes3:amd64.
+Unpacking libxfixes3:amd64 (from .../libxfixes3_1%3a5.0-4_amd64.deb) ...
+Selecting previously unselected package libxdamage1:amd64.
+Unpacking libxdamage1:amd64 (from .../libxdamage1_1%3a1.1.3-2_amd64.deb) ...
+Selecting previously unselected package libxext6:amd64.
+Unpacking libxext6:amd64 (from .../libxext6_2%3a1.3.1-2_amd64.deb) ...
+Selecting previously unselected package libxxf86vm1:amd64.
+Unpacking libxxf86vm1:amd64 (from .../libxxf86vm1_1%3a1.1.2-1_amd64.deb) ...
+Selecting previously unselected package libgl1-mesa-glx:amd64.
+Unpacking libgl1-mesa-glx:amd64 (from .../libgl1-mesa-glx_8.0.5-4_amd64.deb) ...
+Selecting previously unselected package libpixman-1-0:amd64.
+Unpacking libpixman-1-0:amd64 (from .../libpixman-1-0_0.26.0-4_amd64.deb) ...
+Selecting previously unselected package libpng12-0:amd64.
+Unpacking libpng12-0:amd64 (from .../libpng12-0_1.2.49-4_amd64.deb) ...
+Selecting previously unselected package libxcb-shm0:amd64.
+Unpacking libxcb-shm0:amd64 (from .../libxcb-shm0_1.8.1-2_amd64.deb) ...
+Selecting previously unselected package libxrender1:amd64.
+Unpacking libxrender1:amd64 (from .../libxrender1_1%3a0.9.7-1_amd64.deb) ...
+Selecting previously unselected package libcairo2:amd64.
+Unpacking libcairo2:amd64 (from .../libcairo2_1.12.14-2_amd64.deb) ...
+Selecting previously unselected package libglib2.0-0:amd64.
+Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.33.12+really2.32.4-5_amd64.deb) ...
+Selecting previously unselected package libcroco3:amd64.
+Unpacking libcroco3:amd64 (from .../libcroco3_0.6.6-2_amd64.deb) ...
+Selecting previously unselected package libdatrie1:amd64.
+Unpacking libdatrie1:amd64 (from .../libdatrie1_0.2.5-3_amd64.deb) ...
+Selecting previously unselected package libunistring0:amd64.
+Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ...
+Selecting previously unselected package libgettextpo0:amd64.
+Unpacking libgettextpo0:amd64 (from .../libgettextpo0_0.18.1.1-10_amd64.deb) ...
+Selecting previously unselected package libgfortran3:amd64.
+Unpacking libgfortran3:amd64 (from .../libgfortran3_4.7.2-5_amd64.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.7+3_all.deb) ...
+Selecting previously unselected package libice6:amd64.
+Unpacking libice6:amd64 (from .../libice6_2%3a1.0.8-2_amd64.deb) ...
+Selecting previously unselected package libjpeg8:amd64.
+Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1_amd64.deb) ...
+Selecting previously unselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.18-2_all.deb) ...
+Selecting previously unselected package libthai0:amd64.
+Unpacking libthai0:amd64 (from .../libthai0_0.1.18-2_amd64.deb) ...
+Selecting previously unselected package libxft2:amd64.
+Unpacking libxft2:amd64 (from .../libxft2_2.3.1-1_amd64.deb) ...
+Selecting previously unselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_amd64.deb) ...
+Selecting previously unselected package libpango1.0-0:amd64.
+Unpacking libpango1.0-0:amd64 (from .../libpango1.0-0_1.30.0-1_amd64.deb) ...
+Selecting previously unselected package libpaper1:amd64.
+Unpacking libpaper1:amd64 (from .../libpaper1_1.1.24+nmu2_amd64.deb) ...
+Selecting previously unselected package libpcrecpp0:amd64.
+Unpacking libpcrecpp0:amd64 (from .../libpcrecpp0_1%3a8.31-2_amd64.deb) ...
+Selecting previously unselected package libsm6:amd64.
+Unpacking libsm6:amd64 (from .../libsm6_2%3a1.2.1-2_amd64.deb) ...
+Selecting previously unselected package libjbig0:amd64.
+Unpacking libjbig0:amd64 (from .../libjbig0_2.0-2_amd64.deb) ...
+Selecting previously unselected package libtiff5:amd64.
+Unpacking libtiff5:amd64 (from .../libtiff5_4.0.2-6_amd64.deb) ...
+Selecting previously unselected package libxss1:amd64.
+Unpacking libxss1:amd64 (from .../libxss1_1%3a1.2.2-1_amd64.deb) ...
+Selecting previously unselected package libxt6:amd64.
+Unpacking libxt6:amd64 (from .../libxt6_1%3a1.1.3-1_amd64.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_1%3a5.14-1_amd64.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_amd64.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.121_all.deb) ...
+Selecting previously unselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
+Selecting previously unselected package libasprintf-dev:amd64.
+Unpacking libasprintf-dev:amd64 (from .../libasprintf-dev_0.18.1.1-10_amd64.deb) ...
+Selecting previously unselected package libgettextpo-dev:amd64.
+Unpacking libgettextpo-dev:amd64 (from .../libgettextpo-dev_0.18.1.1-10_amd64.deb) ...
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-10_amd64.deb) ...
+Selecting previously unselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20130504_all.deb) ...
+Selecting previously unselected package gfortran-4.7.
+Unpacking gfortran-4.7 (from .../gfortran-4.7_4.7.2-5_amd64.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.7.2-1_amd64.deb) ...
+Selecting previously unselected package libblas3.
+Unpacking libblas3 (from .../libblas3_1.2.20110419-5_amd64.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_amd64.deb) ...
+Selecting previously unselected package libbz2-dev:amd64.
+Unpacking libbz2-dev:amd64 (from .../libbz2-dev_1.0.6-4_amd64.deb) ...
+Selecting previously unselected package libjpeg8-dev:amd64.
+Unpacking libjpeg8-dev:amd64 (from .../libjpeg8-dev_8d-1_amd64.deb) ...
+Selecting previously unselected package liblapack3.
+Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_amd64.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-1_amd64.deb) ...
+Selecting previously unselected package libtinfo-dev:amd64.
+Unpacking libtinfo-dev:amd64 (from .../libtinfo-dev_5.9-10_amd64.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-10_amd64.deb) ...
+Selecting previously unselected package libpaper-utils.
+Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_amd64.deb) ...
+Selecting previously unselected package libpcre3-dev:amd64.
+Unpacking libpcre3-dev:amd64 (from .../libpcre3-dev_1%3a8.31-2_amd64.deb) ...
+Selecting previously unselected package zlib1g-dev:amd64.
+Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_amd64.deb) ...
+Selecting previously unselected package libpng12-dev.
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4_amd64.deb) ...
+Selecting previously unselected package libreadline6-dev:amd64.
+Unpacking libreadline6-dev:amd64 (from .../libreadline6-dev_6.2+dfsg-0.1_amd64.deb) ...
+Selecting previously unselected package libreadline-dev:amd64.
+Unpacking libreadline-dev:amd64 (from .../libreadline-dev_6.2+dfsg-0.1_amd64.deb) ...
+Selecting previously unselected package zip.
+Unpacking zip (from .../archives/zip_3.0-7_amd64.deb) ...
+Selecting previously unselected package unzip.
+Unpacking unzip (from .../archives/unzip_6.0-9_amd64.deb) ...
+Selecting previously unselected package xdg-utils.
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-7_all.deb) ...
+Selecting previously unselected package tcl8.5.
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-2_amd64.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.11-2_amd64.deb) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_3.0.0-2_amd64.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_3.0.0-2_all.deb) ...
+Selecting previously unselected package sbuild-build-depends-pvclust-dummy.
Unpacking sbuild-build-depends-pvclust-dummy (from .../sbuild-build-depends-pvclust-dummy.deb) ...
-Processing triggers for man-db ...
-Setting up libgfortran3 (4.6.1-1) ...
-Setting up libxt6 (1:1.1.1-2) ...
-Setting up cdbs (0.4.94) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-1) ...
-Setting up gfortran (4:4.6.0-6) ...
-update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
-update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
-update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
-Setting up libpaper1 (1.1.24+nmu1) ...
+Setting up libpipeline1:amd64 (1.2.3-1) ...
+Setting up libudev0:amd64 (175-7.2) ...
+Setting up groff-base (1.22.2-2) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.3-3) ...
+Building database of manual pages ...
+Setting up libasprintf0c2:amd64 (0.18.1.1-10) ...
+Setting up libmagic1:amd64 (1:5.14-1) ...
+Setting up libpcre3:amd64 (1:8.31-2) ...
+Setting up libxml2:amd64 (2.8.0+dfsg1-7+nmu1) ...
+Setting up libdrm2:amd64 (2.4.40-1~deb7u2) ...
+Setting up libdrm-nouveau1a:amd64 (2.4.40-1~deb7u2) ...
+Setting up libexpat1:amd64 (2.1.0-1) ...
+Setting up libffi5:amd64 (3.0.10-3) ...
+Setting up libgbm1:amd64 (8.0.5-4) ...
+Setting up libwayland0 (0.85.0-2) ...
+Setting up libxau6:amd64 (1:1.0.7-1) ...
+Setting up libxdmcp6:amd64 (1:1.1.1-1) ...
+Setting up libxcb1:amd64 (1.8.1-2) ...
+Setting up libx11-data (2:1.5.0-1) ...
+Setting up libx11-6:amd64 (2:1.5.0-1) ...
+Setting up libx11-xcb1:amd64 (2:1.5.0-1) ...
+Setting up libxcb-dri2-0:amd64 (1.8.1-2) ...
+Setting up libxcb-render0:amd64 (1.8.1-2) ...
+Setting up libxcb-shape0:amd64 (1.8.1-2) ...
+Setting up libxcb-xfixes0:amd64 (1.8.1-2) ...
+Setting up libegl1-mesa:amd64 (8.0.5-4) ...
+Setting up libfreetype6:amd64 (2.4.9-1.1) ...
+Setting up ucf (3.0025+nmu3) ...
+Setting up ttf-dejavu-core (2.33-3) ...
+Setting up fontconfig-config (2.9.0-7.1) ...
+Setting up libfontconfig1:amd64 (2.9.0-7.1) ...
+Setting up libglapi-mesa:amd64 (8.0.5-4) ...
+Setting up libxcb-glx0:amd64 (1.8.1-2) ...
+Setting up libxfixes3:amd64 (1:5.0-4) ...
+Setting up libxdamage1:amd64 (1:1.1.3-2) ...
+Setting up libxext6:amd64 (2:1.3.1-2) ...
+Setting up libxxf86vm1:amd64 (1:1.1.2-1) ...
+Setting up libgl1-mesa-glx:amd64 (8.0.5-4) ...
+Setting up libpixman-1-0:amd64 (0.26.0-4) ...
+Setting up libpng12-0:amd64 (1.2.49-4) ...
+Setting up libxcb-shm0:amd64 (1.8.1-2) ...
+Setting up libxrender1:amd64 (1:0.9.7-1) ...
+Setting up libcairo2:amd64 (1.12.14-2) ...
+Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ...
+No schema files found: doing nothing.
+Setting up libcroco3:amd64 (0.6.6-2) ...
+Setting up libdatrie1:amd64 (0.2.5-3) ...
+Setting up libunistring0:amd64 (0.9.3-5) ...
+Setting up libgettextpo0:amd64 (0.18.1.1-10) ...
+Setting up libgfortran3:amd64 (4.7.2-5) ...
+Setting up x11-common (1:7.7+3) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6:amd64 (2:1.0.8-2) ...
+Setting up libjpeg8:amd64 (8d-1) ...
+Setting up libthai-data (0.1.18-2) ...
+Setting up libthai0:amd64 (0.1.18-2) ...
+Setting up libxft2:amd64 (2.3.1-1) ...
+Setting up fontconfig (2.9.0-7.1) ...
+Regenerating fonts cache... done.
+Setting up libpango1.0-0:amd64 (1.30.0-1) ...
+Setting up libpaper1:amd64 (1.1.24+nmu2) ...
Creating config file /etc/papersize with new version
-Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up zip (3.0-4) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
-update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
-update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-4) ...
-Setting R_PAPERSIZE_USER default to 'a4'
+Setting up libpcrecpp0:amd64 (1:8.31-2) ...
+Setting up libsm6:amd64 (2:1.2.1-2) ...
+Setting up libjbig0:amd64 (2.0-2) ...
+Setting up libtiff5:amd64 (4.0.2-6) ...
+Setting up libxss1:amd64 (1:1.2.2-1) ...
+Setting up libxt6:amd64 (1:1.1.3-1) ...
+Setting up file (1:5.14-1) ...
+Setting up gettext-base (0.18.1.1-10) ...
+Setting up cdbs (0.4.121) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libasprintf-dev:amd64 (0.18.1.1-10) ...
+Setting up libgettextpo-dev:amd64 (0.18.1.1-10) ...
+Setting up gettext (0.18.1.1-10) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130504) ...
+Setting up gfortran-4.7 (4.7.2-5) ...
+Setting up gfortran (4:4.7.2-1) ...
+update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
+Setting up libblas3 (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
+Setting up libblas-dev (1.2.20110419-5) ...
+update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
+Setting up libbz2-dev:amd64 (1.0.6-4) ...
+Setting up libjpeg8-dev:amd64 (8d-1) ...
+Setting up liblapack3 (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
+Setting up liblapack-dev (3.4.2+dfsg-1) ...
+update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
+Setting up libtinfo-dev:amd64 (5.9-10) ...
+Setting up libncurses5-dev (5.9-10) ...
+Setting up libpaper-utils (1.1.24+nmu2) ...
+Setting up libpcre3-dev:amd64 (1:8.31-2) ...
+Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ...
+Setting up libpng12-dev (1.2.49-4) ...
+Setting up libreadline6-dev:amd64 (6.2+dfsg-0.1) ...
+Setting up libreadline-dev:amd64 (6.2+dfsg-0.1) ...
+Setting up zip (3.0-7) ...
+Setting up unzip (6.0-9) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
+Setting up tcl8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
+Setting up tk8.5 (8.5.11-2) ...
+update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
+Setting up r-base-core (3.0.0-2) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-4) ...
+Setting up r-base-dev (3.0.0-2) ...
Setting up sbuild-build-depends-pvclust-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
-Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-1 gcc-4.6_4.6.1-1 libc6-dev_2.13-8 libstdc++6_4.6.1-1 libstdc++6-4.6-dev_4.6.1-1 linux-libc-dev_2.6.39-2
-Package versions: ant_1.8.2-2 apt_0.8.15.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-2 build-essential_11.5 bzip2_1.0.5-6 ca-certificates_20110502 ca-certificates-java_20110531 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-6 cpp-4.6_4.6.1-1 dash_0.5.5.1-7.4 debconf_1.5.40 debconf-i18n_1.5.40 debfoster_2.7-1.1 debhelper_8.9.0 debian-archive-keyring_2010.08.28 debianutils_4.0.2 default-jdk_1:1.6-40 default-jre_1:1.6-40 default-jre-headless_1:1.6-40 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4stable1 e2fsprogs_1.41.12-4stable1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-6 g++-4.6_4.6.1-1 gcc_4:4.6.0-6 gcc-4.6_4.6.1-1 gcc-4.6-base_4.6.1-1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-6 gfortran-4.6_4.6.1-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 java-common_0.40 java-wrappers_0.1.22 junit4_4.8.2-2 libaccess-bridge-java_1.26.2-5 libaccess-bridge-java-jni_1.26.2-5 libacl1_2.2.51-1 libasound2_1.0.23-4 libasyncns0_0.8-2 libatk1.0-0_2.0.1-1 libatk1.0-data_2.0.1-1 libattr1_1:2.4.46-1 libavahi-client3_0.6.30-4 libavahi-common-data_0.6.30-4 libavahi-common3_0.6.30-4 libavalon-framework-java_4.2.0-7 libbatik-java_1.7-7 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-2 libbsf-java_1:2.4.0-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-8 libc-dev-bin_2.13-8 libc6_2.13-8 libc6-dev_2.13-8 libcairo2_1.10.2-6 libcap2_1:2.21-1 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4stable1 libcommons-io-java_1.4-3 libcommons-logging-java_1.1.1-8 libcommons-math-java_2.2-1 libcommons-net-java_1.4.1-2 libconcurrent-java_1.3.4-4 libcroco3_0.6.2-1 libcups2_1.4.6-11 libdatrie1_0.2.4-3 libdb4.7_4.7.25-20 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdbus-1-3_1.4.12-2 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-3 libexpat1_2.0.1-7 libflac8_1.2.1-3 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-1 libgcrypt11_1.4.6-7 libgdbm3_1.8.3-9 libgdk-pixbuf2.0-0_2.23.3-3.1 libgfortran3_4.6.1-1 libgif4_4.1.6-9 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-2 libgomp1_4.6.1-1 libgpg-error0_1.10-0.3 libgssapi-krb5-2_1.9.1+dfsg-1+b1 libgtk2.0-0_2.24.4-3 libgtk2.0-common_2.24.4-3 libhamcrest-java_1.1-8 libice6_2:1.0.7-2 libjama-java_1.0.2-3 libjargs-java_1.0.0-3 libjasper1_1.900.1-7+b1 libjaxp1.3-java_1.3.05-1 libjlibeps-java_0.1+2-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libk5crypto3_1.9.1+dfsg-1+b1 libkeyutils1_1.4-5 libkrb5-3_1.9.1+dfsg-1+b1 libkrb5support0_1.9.1+dfsg-1+b1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblcms1_1.18.dfsg-1.2+b4 liblocale-gettext-perl_1.05-6+b1 liblog4j1.2-java_1.2.15-11 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-2 libmpc2_0.9-3 libmpfr4_3.0.1-4 libncurses5_5.9-1 libncurses5-dev_5.9-1 libnspr4-0d_4.8.8-2 libnss3-1d_3.12.10-1 libogg0_1.2.2~dfsg-1 liboro-java_2.0.8a-7 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpulse0_0.9.21-4 libpwl5_0.11.2-3 libquadmath0_4.6.1-1 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsam-java_1.46-1 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libsndfile1_1.0.24-1 libsqlite3-0_3.7.7-2 libss2_1.41.12-4stable1 libssl1.0.0_1.0.0d-3 libstdc++6_4.6.1-1 libstdc++6-4.6-dev_4.6.1-1 libswing-layout-java_1.0.4-1 libswitch-perl_2.16-1 libtasn1-3_2.9-4 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.19.1-2 libvorbis0a_1.3.2-1 libvorbisenc2_1.3.2-1 libwrap0_7.6.q-21 libx11-6_2:1.4.3-2 libx11-data_2:1.4.3-2 libxalan2-java_2.7.1-5 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxcomposite1_1:0.4.3-2 libxcursor1_1:1.1.12-1 libxdamage1_1:1.1.3-2 libxdmcp6_1:1.1.0-3 libxerces2-java_2.9.1-4.1 libxext6_2:1.3.0-3 libxfixes3_1:5.0-4 libxft2_2.2.0-3 libxi6_2:1.4.3-3 libxinerama1_2:1.1.1-3 libxml-commons-external-java_1.3.05-2 libxml2_2.7.8.dfsg-3 libxrandr2_2:1.3.2-2 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 libxtst6_2:1.2.0-1 linux-libc-dev_2.6.39-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.19.1-2 multiarch-support_2.13-8 ncurses-base_5.9-1 ncurses-bin_5.9-1 openjdk-6-jdk_6b18-1.8.7-5 openjdk-6-jre_6b18-1.8.7-5 openjdk-6-jre-headless_6b18-1.8.7-5 openjdk-6-jre-lib_6b18-1.8.7-5 openssl_1.0.0d-3 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-4 r-base-dev_2.13.0-4 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pvclust-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 shared-mime-info_0.90-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-2 tzdata-java_2011h-2 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.19.1-2 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 3.2.0-4-amd64 amd64 (x86_64)
+Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.7_4.7.2-5 gcc-4.7_4.7.2-5 libc6-dev_2.13-38 libstdc++6_4.7.2-5 libstdc++6-4.7-dev_4.7.2-5 linux-libc-dev_3.8.11-1
+Package versions: apt_0.9.7.8 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.6 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.20-3 cpp_4:4.7.2-1 cpp-4.7_4.7.2-5 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130504 debian-archive-keyring_2012.4 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-1 findutils_4.4.2-5 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 g++_4:4.7.2-1 g++-4.7_4.7.2-5 gcc_4:4.7.2-1 gcc-4.7_4.7.2-5 gcc-4.7-base_4.7.2-5 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.7.2-1 gfortran-4.7_4.7.2-5 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-1 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.12 html2text_1.3.2a-15 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38 libc-dev-bin_2.13-38 libc6_2.13-38 libc6-dev_2.13-38 libcairo2_1.12.14-2 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.6-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-5 libdpkg-perl_1.16.10 libdrm-nouveau1a_2.4.40-1~deb7u2 libdrm2_2.4.40-1~deb7u2 libegl1-mesa_8.0.5-4 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgbm1_8.0.5-4 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.7.2-5 libgl1-mesa-glx_8.0.5-4 libglapi-mesa_8.0.5-4 libglib2.0-0_2.33.12+really2.32.4-5 libgmp10_2:5.1.1+dfsg-3 libgomp1_4.7.2-5 libice6_2:1.0.8-2 libitm1_4.7.2-5 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblocale-gettext-perl_1.05-7+b1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-1 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpfr4_3.1.1-1 libncurses5_5.9-10 libncurses5-dev_5.9-10 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libpod-plainer-perl_1.03-1 libquadmath0_4.7.2-5 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.7.2-5 libstdc++6-4.7-dev_4.7.2-5 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.18-2 libthai0_0.1.18-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libwayland0_0.85.0-2 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libx11-xcb1_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-dri2-0_1.8.1-2 libxcb-glx0_1.8.1-2 libxcb-render0_1.8.1-2 libxcb-shape0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb-xfixes0_1.8.1-2 libxcb1_1.8.1-2 libxdamage1_1:1.1.3-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxfixes3_1:5.0-4 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 libxxf86vm1_1:1.1.2-1 linux-libc-dev_3.8.11-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian9 make_3.81-8.2 man-db_2.6.3-3 mawk_1.3.3-17 mount_2.20.1-5.3 multiarch-support_2.13-38 ncurses-base_5.9-10 ncurses-bin_5.9-10 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21 perl-base_5.14.2-21 perl-modules_5.14.2-21 po-debconf_1.0.16+nmu2 r-base-core_3.0.0-2 r-base-dev_3.0.0-2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pvclust-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-5 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33-3 tzdata_2013b-2 ucf_3.0025+nmu3 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.7.dfsg-13 zlib1g-dev_1:1.2.7.dfsg-13
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -256,10 +563,10 @@ Package versions: ant_1.8.2-2 apt_0.8.15.1 base-files_6.4 base-passwd_3.5.22 bas
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (pvclust_1.2-2-1.dsc)
+dpkg-source: warning: extracting unsigned source package (pvclust_1.2-2-2.dsc)
dpkg-source: info: extracting pvclust in pvclust-1.2-2
dpkg-source: info: unpacking pvclust_1.2-2.orig.tar.gz
-dpkg-source: info: applying pvclust_1.2-2-1.diff.gz
+dpkg-source: info: applying pvclust_1.2-2-2.diff.gz
Check disc space
────────────────
@@ -272,28 +579,28 @@ User Environment
HOME=/sbuild-nonexistent
LOGNAME=charles
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=unstable
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=sid-amd64-sbuild-ed9d06f9-3304-4cf9-b493-f4d334f39fe0
-SCHROOT_UID=31051
+SCHROOT_SESSION_ID=sid-amd64-sbuild-40eab5d4-f136-4f60-90fd-e8357a0859da
+SCHROOT_UID=1000
SCHROOT_USER=charles
SHELL=/bin/sh
TERM=xterm
USER=charles
USERNAME=charles
+XDG_RUNTIME_DIR=/run/user/charles
+XDG_SEAT=seat0
+XDG_SESSION_ID=2
+XDG_VTNR=7
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package pvclust
-dpkg-buildpackage: source version 1.2-2-1
+dpkg-buildpackage: source version 1.2-2-2
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build pvclust-1.2-2
dpkg-buildpackage: host architecture amd64
@@ -325,8 +632,8 @@ rm -f config.log config.status
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
dpkg-source: info: building pvclust using existing pvclust_1.2-2.orig.tar.gz
-dpkg-source: info: building pvclust in pvclust_1.2-2-1.diff.gz
-dpkg-source: info: building pvclust in pvclust_1.2-2-1.dsc
+dpkg-source: info: building pvclust in pvclust_1.2-2-2.diff.gz
+dpkg-source: info: building pvclust in pvclust_1.2-2-2.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -354,6 +661,7 @@ dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 3.0.0-2)" >> debian/r-cran-pvclust.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-pvclust/usr/lib/R/site-library --clean \
@@ -368,9 +676,8 @@ if test -f /usr/bin/xvfb-run; then \
** preparing package for lazy loading
** help
*** installing help indices
-** building package indices ...
+** building package indices
** testing if installed package can be loaded
-
* DONE (pvclust)
rm -vf /«PKGBUILDDIR»/debian/r-cran-pvclust/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-cran-pvclust/usr/lib/R/site-library/pvclust/COPYING \
@@ -382,7 +689,6 @@ if test -f debian/overrides; then \
fi
Adding cdbs dependencies to debian/r-cran-pvclust.substvars
dh_installdirs -pr-cran-pvclust
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-cran-pvclust.substvars
dh_installdocs -pr-cran-pvclust
dh_installexamples -pr-cran-pvclust
dh_installman -pr-cran-pvclust
@@ -414,13 +720,13 @@ dh_shlibdeps -pr-cran-pvclust
dh_gencontrol -pr-cran-pvclust
dh_md5sums -pr-cran-pvclust
dh_builddeb -pr-cran-pvclust
-dpkg-deb: building package `r-cran-pvclust' in `../r-cran-pvclust_1.2-2-1_all.deb'.
- dpkg-genchanges >../pvclust_1.2-2-1_amd64.changes
-dpkg-genchanges: including full source code in upload
+dpkg-deb: building package `r-cran-pvclust' in `../r-cran-pvclust_1.2-2-2_all.deb'.
+ dpkg-genchanges >../pvclust_1.2-2-2_amd64.changes
+dpkg-genchanges: not including original source code in upload
dpkg-source --after-build pvclust-1.2-2
-dpkg-buildpackage: full upload (original source is included)
+dpkg-buildpackage: binary and diff upload (original source NOT included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110701-1433
+Build finished at 20130507-0826
Finished
────────
@@ -432,63 +738,68 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-pvclust_1.2-2-1_amd64.changes:
+pvclust_1.2-2-2_amd64.changes:
──────────────────────────────
Format: 1.8
-Date: Fri, 01 Jul 2011 14:32:30 +0900
+Date: Tue, 07 May 2013 08:23:35 +0900
Source: pvclust
Binary: r-cran-pvclust
Architecture: source all
-Version: 1.2-2-1
+Version: 1.2-2-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-cran-pvclust - Hierarchical Clustering with P-Values via Multiscale Bootstrap
-Closes: 632002
Changes:
- pvclust (1.2-2-1) unstable; urgency=low
+ pvclust (1.2-2-2) unstable; urgency=low
.
- * Initial release (Closes: #632002)
+ a9558c7 Removed obsolete DM-Upload-Allowed field.
+ bc6c4f8 Normalised Debian copyright file with config-model-edit.
+ 9fe7486 Use Debhelper 9.
+ e07ef85 Acquire R:Depends directly from r-base-dev.
+ 1382359 Include commit IDs in Debian changelog.
+ 9f1b846 Normalised debian/control with config-model-edit.
+ 9f68ec9 Remove version constraint on R , satisfied even in oldstable.
+ 832f81c Documented bibliographic and other upstream information.
+ d68e1f4 Removed redundant Recommends statement on MASS and snow.
+ 7320ae7 Normalised VCS URLs following Lintian's standard.
+ 1440045 Conforms to Policy version 3.9.4.
Checksums-Sha1:
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- 6351d4fc784d7a01bcaab91249459df6a2c3f461 101062 pvclust_1.2-2.orig.tar.gz
- a2e062502ed9b8631afc8d89d893b679fdc7e75a 1584 pvclust_1.2-2-1.diff.gz
- e6b0b8581f66416216814e052d89e90b32c2368e 140700 r-cran-pvclust_1.2-2-1_all.deb
+ 649b5586299bab04f9b70e8c0437302230a6a07e 1043 pvclust_1.2-2-2.dsc
+ 8cb82d64052284297f90cbb97936bdccae12988c 2082 pvclust_1.2-2-2.diff.gz
+ 0ecc6466566ca58fda22b85cd31dfd19bf51031d 142436 r-cran-pvclust_1.2-2-2_all.deb
Checksums-Sha256:
- e02223509545c4f712614a7bcc1114074eaf2e58a6cb6ccecac341c02662d701 1013 pvclust_1.2-2-1.dsc
- a5a9a2ff76429d75e1171497748f520dcb50fe600b9160d2ceba5d4ae6e65894 101062 pvclust_1.2-2.orig.tar.gz
- 6e10de15ad50051d39620dce2d37b917dba6114891a9523387a9e6ce8c10e55e 1584 pvclust_1.2-2-1.diff.gz
- a9cee4248b7caf7dc2728f2909494e89c914fa525e9d9cf2d0a96081328e7080 140700 r-cran-pvclust_1.2-2-1_all.deb
+ a4b90ceda3e9464b1103e6540bc618fc9398b906968ec24b6cfe7bb20c664d26 1043 pvclust_1.2-2-2.dsc
+ d32a292b2f244a955602e11d60da9d303271bdf17f899d1c0cba33f564e8b5dd 2082 pvclust_1.2-2-2.diff.gz
+ 0691c8135305e6be02aba3431a2fc9650ff6c2a863222214edf0794e9995ab3b 142436 r-cran-pvclust_1.2-2-2_all.deb
Files:
- 5bf95010eabe49b1b7196482390afe9b 1013 gnu-r optional pvclust_1.2-2-1.dsc
- 7f17a660396ffad685177c0b78f06ec7 101062 gnu-r optional pvclust_1.2-2.orig.tar.gz
- 1929b105f04796a485144f73406d98b0 1584 gnu-r optional pvclust_1.2-2-1.diff.gz
- 978c7d30a7be2f2259184fc5977a43b7 140700 gnu-r optional r-cran-pvclust_1.2-2-1_all.deb
+ c8298df525365841ecf78284c332a85a 1043 gnu-r optional pvclust_1.2-2-2.dsc
+ b13cb13420ff4f3950d76ac5fe3f355a 2082 gnu-r optional pvclust_1.2-2-2.diff.gz
+ f26b841e7d0bccd700c5acee014e1c22 142436 gnu-r optional r-cran-pvclust_1.2-2-2_all.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-cran-pvclust_1.2-2-1_all.deb
+r-cran-pvclust_1.2-2-2_all.deb
──────────────────────────────
new debian package, version 2.0.
- size 140700 bytes: control archive= 1289 bytes.
- 669 bytes, 17 lines control
+ size 142436 bytes: control archive=1285 bytes.
+ 658 bytes, 16 lines control
1737 bytes, 22 lines md5sums
Package: r-cran-pvclust
Source: pvclust
- Version: 1.2-2-1
+ Version: 1.2-2-2
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 272
- Depends: r-base-core (>= 2.13.0~)
- Recommends: r-cran-mass, r-cran-snow
- Suggests: r-cran-rmpi
+ Installed-Size: 143
+ Depends: r-base-core (>= 3.0.0-2)
+ Suggests: r-cran-mass, r-cran-snow, r-cran-rmpi
Section: gnu-r
Priority: optional
Homepage: http://www.is.titech.ac.jp/~shimo/prog/pvclust/
@@ -498,42 +809,42 @@ r-cran-pvclust_1.2-2-1_all.deb
unbiased) p-values as well as BP (boostrap probability) values
computed via multiscale bootstrap resampling.
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/lib/
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/R/
--rw-r--r-- root/root 13922 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/R/pvclust.rdb
--rw-r--r-- root/root 384 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/R/pvclust
--rw-r--r-- root/root 523 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/R/pvclust.rdx
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/help/
--rw-r--r-- root/root 269 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/help/AnIndex
--rw-r--r-- root/root 30734 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/help/pvclust.rdb
--rw-r--r-- root/root 177 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/help/aliases.rds
--rw-r--r-- root/root 142 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/help/paths.rds
--rw-r--r-- root/root 303 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/help/pvclust.rdx
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/data/
--rw-r--r-- root/root 87350 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/data/lung.RData
--rw-r--r-- root/root 330 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/NAMESPACE
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/html/
--rw-r--r-- root/root 2772 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/html/00Index.html
--rw-r--r-- root/root 1179 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/html/R.css
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/Meta/
--rw-r--r-- root/root 586 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/Meta/Rd.rds
--rw-r--r-- root/root 609 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/Meta/hsearch.rds
--rw-r--r-- root/root 270 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/Meta/nsInfo.rds
--rw-r--r-- root/root 101 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/Meta/data.rds
--rw-r--r-- root/root 224 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/Meta/links.rds
--rw-r--r-- root/root 841 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/Meta/package.rds
--rw-r--r-- root/root 812 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/DESCRIPTION
--rw-r--r-- root/root 619 2011-07-01 14:33 ./usr/lib/R/site-library/pvclust/INDEX
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/share/
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/share/doc/r-cran-pvclust/
--rw-r--r-- root/root 996 2011-07-01 14:33 ./usr/share/doc/r-cran-pvclust/copyright
--rw-r--r-- root/root 154 2011-07-01 14:33 ./usr/share/doc/r-cran-pvclust/changelog.Debian.gz
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/share/
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/share/doc/
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/share/doc/r-cran-pvclust/
+-rw-r--r-- root/root 547 2013-05-07 08:26 ./usr/share/doc/r-cran-pvclust/changelog.Debian.gz
+-rw-r--r-- root/root 1031 2013-05-07 08:26 ./usr/share/doc/r-cran-pvclust/copyright
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/lib/
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/lib/R/
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/
+-rw-r--r-- root/root 619 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/INDEX
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/html/
+-rw-r--r-- root/root 1179 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/html/R.css
+-rw-r--r-- root/root 2767 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/html/00Index.html
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/help/
+-rw-r--r-- root/root 176 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/help/aliases.rds
+-rw-r--r-- root/root 269 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/help/AnIndex
+-rw-r--r-- root/root 30896 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/help/pvclust.rdb
+-rw-r--r-- root/root 141 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/help/paths.rds
+-rw-r--r-- root/root 300 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/help/pvclust.rdx
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/data/
+-rw-r--r-- root/root 87350 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/data/lung.RData
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/R/
+-rw-r--r-- root/root 524 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/R/pvclust.rdx
+-rw-r--r-- root/root 14108 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/R/pvclust.rdb
+-rw-r--r-- root/root 1056 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/R/pvclust
+drwxr-xr-x root/root 0 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/Meta/
+-rw-r--r-- root/root 100 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/Meta/data.rds
+-rw-r--r-- root/root 224 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/Meta/links.rds
+-rw-r--r-- root/root 607 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/Meta/hsearch.rds
+-rw-r--r-- root/root 586 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/Meta/Rd.rds
+-rw-r--r-- root/root 272 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/Meta/nsInfo.rds
+-rw-r--r-- root/root 848 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/Meta/package.rds
+-rw-r--r-- root/root 330 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/NAMESPACE
+-rw-r--r-- root/root 811 2013-05-07 08:26 ./usr/lib/R/site-library/pvclust/DESCRIPTION
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -544,9 +855,6 @@ drwxr-xr-x root/root 0 2011-07-01 14:33 ./usr/share/doc/r-cran-pvclust/
lintian
───────
-W: pvclust source: stronger-dependency-implies-weaker r-cran-pvclust recommends -> suggests r-cran-mass
-W: pvclust source: stronger-dependency-implies-weaker r-cran-pvclust recommends -> suggests r-cran-snow
-W: pvclust source: unused-build-dependency-on-cdbs
I: pvclust source: missing-debian-source-format
P: r-cran-pvclust: no-upstream-changelog
W: r-cran-pvclust: copyright-without-copyright-notice
@@ -558,127 +866,27 @@ I: Lintian run was successful.
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
- libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
- libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
- liboro-java liblcms1 libxerces2-java libwrap0 libavalon-framework-java
- libatk1.0-data libxalan2-java libdbus-1-3 libcap2 java-common libnspr4-0d
- java-wrappers default-jre-headless libgnutls26 libcommons-logging-java
- libtasn1-3 openjdk-6-jre-lib libcommons-math-java openjdk-6-jre-headless
- libavahi-common-data libsam-java libgdk-pixbuf2.0-0 ant
- libaccess-bridge-java-jni default-jdk libcups2 default-jre libxinerama1
- libkrb5support0 libgif4 libcommons-net-java libbsf-java
- libxml-commons-external-java tzdata-java libgcrypt11 libkeyutils1 libasound2
- libflac8 libconcurrent-java libvorbisenc2 libjama-java libasyncns0
- libjasper1 libswing-layout-java libxtst6 libavahi-client3
- ca-certificates-java openssl libhamcrest-java libpulse0 libxdamage1
- libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk libbatik-java libxcursor1
- libjlibeps-java openjdk-6-jre libavahi-common3 liblog4j1.2-java
- libcommons-io-java libxrandr2 libnss3-1d ca-certificates libsndfile1
- libsqlite3-0 libgtk2.0-0 libssl1.0.0 libgpg-error0 libogg0
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
- libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
- libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
- liboro-java liblcms1 libunistring0 libxerces2-java debhelper libwrap0
- libavalon-framework-java libatk1.0-data ttf-dejavu-core libx11-data
- libxalan2-java libdbus-1-3 unzip libpipeline1 libcap2 java-common po-debconf
- libpcre3 libnspr4-0d groff-base gettext-base java-wrappers
- default-jre-headless libcairo2 libgnutls26 libcommons-logging-java
- intltool-debian libtasn1-3 openjdk-6-jre-lib libfreetype6 libthai-data
- shared-mime-info libglib2.0-0 libexpat1 libcommons-math-java libdatrie1
- openjdk-6-jre-headless fontconfig libavahi-common-data libsam-java
- libgdk-pixbuf2.0-0 gettext libxcb1 ant libaccess-bridge-java-jni default-jdk
- libxau6 libpixman-1-0 libcups2 default-jre libxinerama1 libkrb5support0
- libgif4 libcommons-net-java libxft2 fontconfig-config libbsf-java libcroco3
- libxml-commons-external-java tzdata-java libice6 libxdmcp6 libgcrypt11
- libthai0 libxml2 libkeyutils1 file libasound2 libflac8 libxrender1
- libconcurrent-java libvorbisenc2 libjama-java ucf libasyncns0 libtiff4
- libjasper1 libswing-layout-java libjpeg62 libxtst6 libavahi-client3
- x11-common libx11-6 man-db libfontconfig1 ca-certificates-java html2text
- openssl libhamcrest-java libpango1.0-0 libsm6 libpulse0 libxdamage1
- libxcb-render0 libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk
- libbatik-java libxcursor1 libxcb-shm0 libjlibeps-java libxext6 openjdk-6-jre
- libavahi-common3 liblog4j1.2-java libcommons-io-java libxrandr2 libnss3-1d
- ca-certificates libsndfile1 libsqlite3-0 libgtk2.0-0 libmagic1 libssl1.0.0
- libgpg-error0 libogg0
-Use 'apt-get autoremove' to remove them.
-The following packages will be REMOVED:
- cdbs* dpatch* gfortran* gfortran-4.6* libblas-dev* libblas3gf* libbz2-dev*
- libgfortran3* libjpeg62-dev* liblapack-dev* liblapack3gf* libncurses5-dev*
- libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0* libpng12-dev*
- libreadline-dev* libreadline6-dev* libxss1* libxt6* r-base-core* r-base-dev*
- sbuild-build-depends-pvclust-dummy* tcl8.5* tk8.5* xdg-utils* zip*
- zlib1g-dev*
-0 upgraded, 0 newly installed, 29 to remove and 0 not upgraded.
-After this operation, 87.3 MB disk space will be freed.
-(Reading database ... 18419 files and directories currently installed.)
-Removing sbuild-build-depends-pvclust-dummy ...
-Removing r-base-dev ...
-Removing cdbs ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing gfortran ...
-Removing gfortran-4.6 ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
-Removing r-base-core ...
-Purging configuration files for r-base-core ...
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev ...
-Removing libgfortran3 ...
-Purging configuration files for libgfortran3 ...
-Removing libjpeg62-dev ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
-Removing libncurses5-dev ...
-Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
-Removing libpcrecpp0 ...
-Purging configuration files for libpcrecpp0 ...
-Removing libpng12-dev ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing libxss1 ...
-Purging configuration files for libxss1 ...
-Removing libxt6 ...
-Purging configuration files for libxt6 ...
-Removing tcl8.5 ...
-Purging configuration files for tcl8.5 ...
-Removing xdg-utils ...
-Removing zip ...
-Removing zlib1g-dev ...
-Processing triggers for man-db ...
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
-Architecture: amd64
-Build-Space: 744
-Build-Time: 6
+Build Architecture: amd64
+Build-Space: 568
+Build-Time: 11
Distribution: unstable
-Install-Time: 34
-Job: pvclust_1.2-2-1.dsc
+Host Architecture: amd64
+Install-Time: 64
+Job: pvclust_1.2-2-2.dsc
Lintian: pass
+Machine Architecture: amd64
Package: pvclust
-Package-Time: 42
-Source-Version: 1.2-2-1
-Space: 744
+Package-Time: 86
+Source-Version: 1.2-2-2
+Space: 568
Status: successful
-Version: 1.2-2-1
+Version: 1.2-2-2
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110701-1433
-Build needed 00:00:42, 744k disc space
+Finished at 20130507-0826
+Build needed 00:01:26, 568k disc space
diff --git a/dsc b/dsc
index be1610b..cd54d49 100644
--- a/dsc
+++ b/dsc
@@ -5,39 +5,40 @@ Format: 1.0
Source: pvclust
Binary: r-cran-pvclust
Architecture: all
-Version: 1.2-2-1
+Version: 1.2-2-2
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>
-Dm-Upload-Allowed: yes
Homepage: http://www.is.titech.ac.jp/~shimo/prog/pvclust/
-Standards-Version: 3.9.2
-Vcs-Browser: http://git.debian.org/?p=debian-med/pvclust.git
-Vcs-Git: git://git.debian.org/debian-med/pvclust.git
-Build-Depends: cdbs, debhelper (>= 8), r-base-dev (>= 2.10.0)
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/pvclust.git
+Vcs-Git: git://anonscm.debian.org/debian-med/pvclust.git
+Build-Depends: cdbs, debhelper (>= 9), r-base-dev
+Package-List:
+ r-cran-pvclust deb gnu-r optional
Checksums-Sha1:
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- a2e062502ed9b8631afc8d89d893b679fdc7e75a 1584 pvclust_1.2-2-1.diff.gz
+ 8cb82d64052284297f90cbb97936bdccae12988c 2082 pvclust_1.2-2-2.diff.gz
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- 1929b105f04796a485144f73406d98b0 1584 pvclust_1.2-2-1.diff.gz
+ b13cb13420ff4f3950d76ac5fe3f355a 2082 pvclust_1.2-2-2.diff.gz
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diff --git a/upload b/upload
new file mode 100644
index 0000000..3460399
--- /dev/null
+++ b/upload
@@ -0,0 +1,5 @@
+u pvclust_1.2-2-2.dsc ftp.upload.debian.org Tue May 7 08:36:17 2013
+u r-cran-pvclust_1.2-2-2_all.deb ftp.upload.debian.org Tue May 7 08:36:18 2013
+u pvclust_1.2-2-2.diff.gz ftp.upload.debian.org Tue May 7 08:36:19 2013
+u pvclust_1.2-2-2_amd64.changes ftp.upload.debian.org Tue May 7 08:36:21 2013
+s pvclust_1.2-2-2_amd64.changes ftp.upload.debian.org Tue May 7 08:36:21 2013
--
Hierarchical Clustering with P-Values via Multiscale Bootstrap
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