[med-svn] r13682 - in trunk/packages/sofa-framework/tags: . 1.0~beta4-7.1 1.0~beta4-7.1/patches 1.0~beta4-7.1/source
Anton Gladky
gladk at alioth.debian.org
Mon May 20 19:19:41 UTC 2013
Author: gladk
Date: 2013-05-20 19:19:40 +0000 (Mon, 20 May 2013)
New Revision: 13682
Added:
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/Notes
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/README.Debian
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/README.source
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/changelog
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/compat
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/control
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/copyright
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/get-orig-source
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/index.html
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1-dev.install
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1.install
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1.lintian-overrides
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/13_gcc4.4.diff
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/50_all_changes.diff
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/55_fix_mips_sqrt.diff
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/78_atomicity.diff
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/fix_mutable_serr_sout.diff
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/qwt5-qt4.patch
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/series
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/sofa-framework-1.0~beta4.libpng15.patch
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/sofa-framework-gcc-4.7.diff
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/tinyxml26.diff
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/rules
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-apps.install
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-apps.manpages
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-data.install
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-doc.doc-base
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-doc.install
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-tutorials.install
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.1
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.desktop
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.menu
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.xpm
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/source/
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/source/format
trunk/packages/sofa-framework/tags/1.0~beta4-7.1/watch
Log:
tag debian/1.0~beta4-7.1
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/Notes
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/Notes (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/Notes 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,60 @@
+1)
+$ grep -r "1.0 beta 3" .
+./modules/sofa/component/topology/ManifoldTriangleSetTopologyAlgorithms.h: * SOFA, Simulation Open-Framework Architecture, version 1.0 beta 3 *
+
+
+2)
+please provide a
+copyright file for extlibs/miniFlowVR/
+
+3)
+please provide a
+make install
+
+4)
+Sometimes it is better to link against:
+libqt3-mt-dev, qt3-dev-tools,
+libqglviewer-dev, libqwt-dev,
+
+5)
+ * debian/copyright: MKL removed
+
+
+
+6)
+
+ * Example files can be find in /usr/share/sofa
+ * Use a shell script to set the environment variable SOFA_DATA_PATH and to start the sofa gui
+
+7)
+ * $$LIBSUFFIX for the debug target not needed because we are using Debian libraries
+
+8)
+ update "man page", update "sofa -h" because
+ "sofa myscene.scn" works, but it is not documented
+
+9) libogre-dev (>= 1.6.0) because of removed Entity::setNormaliseNormals
+
+ * By default now, renormalisation of normals is automatic if there is a non-unit scale on the main
+ world matrix rather than the Entity::setNormaliseNormals option. If the user wants to optimise
+ this, they can prevent the SceneManager doing it in all cases by calling
+ SceneManager::setNormaliseNormalsOnScale(false) and then explicitly enabling the option per Pass
+ instead. In the case of an array of world matrices being used, if the first world matrix isn't a
+ guide then the shader writer should handle the renormalisation.
+
+
+10) doesn't work
+# Uncomment if you want to use LibXML instead of built-in TinyXML
+# DEFINES += SOFA_XML_PARSER_LIBXML
+
+./applications/sofa/gui/qt/GraphVisitor.h contains
+ //Tinyxml library
+ #include <tinyxml.h>
+ #include <tinystr.h>
+
+
+11)
+since libtinyxml-dev is in Debian we can remove ./extlibs/tinyxml
+debian/copyright has to be updated as well
+
+
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/README.Debian
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/README.Debian (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/README.Debian 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,45 @@
+sofa-framework for Debian
+-------------------------
+beta3:
+Project MESSAGE: ====== SOFA Build Configuration ======
+Project MESSAGE: | Platform: Linux/Unix
+Project MESSAGE: | Mode: RELEASE
+Project MESSAGE: | Qt version: 4.x
+Project MESSAGE: | RDTSC timer: DISABLED
+Project MESSAGE: | PNG support: ENABLED
+Project MESSAGE: | OpenGL Extensions support using GLEW: ENABLED
+Project MESSAGE: | GPU support using CUDA: DISABLED
+Project MESSAGE: | PML/LML support: ENABLED
+Project MESSAGE: | GLUT GUI: ENABLED
+Project MESSAGE: | Qt GUI: ENABLED
+Project MESSAGE: | - Qt OpenGL viewer: ENABLED
+Project MESSAGE: | - Qt QGLViewer viewer: DISABLED
+Project MESSAGE: | - Qt OGRE 3D viewer: ENABLED
+Project MESSAGE: ======================================
+
+beta4:
+Project MESSAGE: ====== SOFA Build Configuration ======
+Project MESSAGE: | Platform: Linux/Unix
+Project MESSAGE: | Mode: RELEASE with debug symbols
+Project MESSAGE: | Qt version: 4.x
+Project MESSAGE: | RDTSC timer: DISABLED
+Project MESSAGE: | BOOST libraries: ENABLED
+Project MESSAGE: | TinyXML parser: ENABLED
+Project MESSAGE: | LibXML parser: DISABLED
+Project MESSAGE: | PNG support: ENABLED
+Project MESSAGE: | OpenGL Extensions support using GLEW: ENABLED
+Project MESSAGE: | GPU support using CUDA: DISABLED
+Project MESSAGE: | PML/LML support: ENABLED
+Project MESSAGE: | CSPARSE library : DISABLED
+Project MESSAGE: | METIS library : DISABLED
+Project MESSAGE: | TAUCS library : DISABLED
+Project MESSAGE: | GLUT GUI: ENABLED
+Project MESSAGE: | Qt GUI: ENABLED
+Project MESSAGE: | - Qt OpenGL viewer: ENABLED
+Project MESSAGE: | - Qt QGLViewer viewer: DISABLED
+Project MESSAGE: | - Qt OGRE 3D viewer: ENABLED
+Project MESSAGE: ======================================
+
+
+
+ -- Dominique Belhachemi <domibel at debian.org> Sat, 16 Feb 2008 10:26:03 +0100
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/README.source
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/README.source (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/README.source 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,16 @@
+Doxygen documentation for sofa
+------------------------------
+
+Formerly a package sofa-doc was created which contained exhaustive
+documentation created automatically by using doxygen. The process to
+generate the documentation lasts more than one hour on recent hardware
+and the results are close to 20.000 Files consuming nearly 1GB of disk
+space (0.75GB compressed in *.deb file). This seems to be a waste of
+resources and thus the package was dropped.
+
+If you intend to build the documentation locally from the Debian
+package source feel free to uncomment the sofa-doc package section
+in the debian/control file.
+
+ -- Andreas Tille <tille at debian.org> Tue, 29 May 2012 10:55:43 +0200
+
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/changelog
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/changelog (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/changelog 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,178 @@
+sofa-framework (1.0~beta4-7.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Remove build-dep on quilt.
+ * Change build-dep from libqglviewer-qt4-dev to libqglviewer-dev.
+ * Remove obsolete DM-Upload flag.
+ * Fix FTBFS against libpng1.5. (Closes: #650568)
+
+ -- Anton Gladky <gladk at debian.org> Mon, 20 May 2013 19:44:00 +0200
+
+sofa-framework (1.0~beta4-7) unstable; urgency=low
+
+ * debian/watch: also seek for https URLs
+ * debian/get-orig-source:
+ - Fetch any new version not only one hard coded version
+ - Make sure also versioned external library sources will
+ be removed
+ * debian/rules
+ - debian/*.{install,manpages} (make more use of dh_* helper files)
+ - Fixed clean target
+ - use short dh to simplify further packaging including hardening
+ * debian/control:
+ - Build-Depends: libeigen3-dev, libqglviewer-qt4-dev,
+ libsuitesparse-dev
+ - Build-Depends: s/libpng12-dev/libpng-dev/
+ Closes: #662508
+ - Standards-Version: 3.9.3 (no changes needed)
+ - Do not build sofa-doc by default (see README.source)
+ * debian/copyright: ensure DEP5 by fixing using
+ cme fix dpkg-copyright
+ * debian/patches/sofa-framework-gcc-4.7.diff: Fix gcc-4.7 build issue
+ Thanks to Matej Vela <vela at debian.org> for the patch
+ Closes: #673841
+ * debian/README.source:
+ - delete remark about quilt which is redundant these days
+ - add remark why sofa-doc is not builded any more and how
+ the package could be build for private use
+ * debhelper 9 (control+compat)
+
+ -- Andreas Tille <tille at debian.org> Thu, 31 May 2012 16:19:59 +0200
+
+sofa-framework (1.0~beta4-6.1) unstable; urgency=low
+
+ * Non maintainer upload.
+ * Fix build failure with GCC 4.7 (Matej Vela). Closes: #673841.
+
+ -- Matthias Klose <doko at debian.org> Tue, 29 May 2012 09:18:41 +0000
+
+sofa-framework (1.0~beta4-6) unstable; urgency=low
+
+ [ Nelson A. de Oliveira ]
+ * Fix menu file
+ * Updated build-dependency on libqwt-dev (Closes: #638170)
+
+ [ Andreas Tille ]
+ * debian/control:
+ - Standards-Version: 3.9.2 (no changes needed)
+ - Fixed Vcs-Svn
+ - Build-Depends:
+ + s/libpng-dev/libpng12-dev/
+ + s/libqwt-dev/libqwt5-qt4-dev/
+ * debian/rules
+ - Do not remove extlibs/tinyxml in clean target which is just
+ part of the upstream source. The proper place to remove things
+ like this would be in get-orig-source.
+ - Polishing after clean target which leaves several files hanging
+ around
+ * debian/patches/qwt5-qt4.patch: Sofa does not build properly with
+ libqwt-dev so adjusting include directory and fixing some header
+ file is needed
+ * debian/sofa.1: Fixed spelling error
+
+ -- Andreas Tille <tille at debian.org> Tue, 13 Dec 2011 12:55:52 +0100
+
+sofa-framework (1.0~beta4-5.1) unstable; urgency=high
+
+ * Non-maintainer upload.
+ * Fix build failure due to new TinyXML 2.6 (Closes: #628114).
+ Thanks to Felix Geyer for the patch.
+ * Bump build-dep on libtinyxml-dev to 2.6.
+
+ -- Mehdi Dogguy <mehdi at debian.org> Sun, 29 May 2011 18:02:12 +0200
+
+sofa-framework (1.0~beta4-5) unstable; urgency=low
+
+ * Switch to dpkg-source 3.0 (quilt) format
+ * debian/rules: drop the quilt patch/unpatch logic
+ * patches/fix_mutable_serr_sout.diff: remove mutable keyword (Closes: #625059)
+ * bump Standards-Version: 3.9.1 (no changes)
+ * set debian/compat to 8
+ * debian/control: removed duplicated "section" fields
+ * Changed debian/sofa.desktop's category to Education;Science
+ * (Closes: #594671, LP: #605497)
+
+ -- Dominique Belhachemi <domibel at debian.org> Sat, 07 May 2011 20:21:51 -0400
+
+sofa-framework (1.0~beta4-4) unstable; urgency=low
+
+ * use Debian's libtinyxml-dev (Closes: #573941)
+ * reduce optimization level to -O1 as a workaround for
+ linking failure (Thanks to Ilya Barygi) (Closes: #560104)
+ * fixed FTBFS for SuperH (Thanks to Nobuhiro Iwamatsu) (Closes: #567223)
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Tue, 16 Mar 2010 17:42:22 -0400
+
+sofa-framework (1.0~beta4-3) unstable; urgency=low
+
+ [Dominique Belhachemi]
+ * added linker option --no-add-needed (Closes: #556352)
+ libdl had to be added to the list of libraries
+ * switched from dpatch to quilt
+ * added debain/README.source
+ * removed dh_desktop from debian/rules
+
+ [Andreas Tille]
+ * debian/control:
+ - Added missing Vcs tags
+ - Standards-Version: 3.8.3 (no changes)
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Sun, 06 Dec 2009 20:18:59 -0500
+
+sofa-framework (1.0~beta4-2) unstable; urgency=low
+
+ * csparse support disabled because it conflicts with the
+ newer version in libsuitesparse-dev (Closes: #532693)
+ * Build-Conflicts: qt3-dev-tools added
+ * lost GCC 4.4 patches added (Closes: #532396)
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Wed, 17 Jun 2009 23:10:35 -0400
+
+sofa-framework (1.0~beta4-1) unstable; urgency=low
+
+ * new upstream release
+ * Qt OGRE 3D viewer disabled (Closes: #527706)
+ * MIPS/ARM patch, AMD64 patch and Newmat patch removed because they
+ have been applied by upstream (Thanks to Everton Hermann)
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Sun, 07 Jun 2009 14:35:15 -0400
+
+sofa-framework (1.0~beta3-5) unstable; urgency=low
+
+ * set SOFA_QT4 explicitly
+ * added #include headers required by GCC 4.4 (Closes: #505953)
+ * added missing PML files
+ * fixed sofa wrapper
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Sat, 15 Nov 2008 19:45:47 +0100
+
+sofa-framework (1.0~beta3-4) unstable; urgency=low
+
+ * PML/LML support enabled
+ * PNG support enabled
+ * Qt OGRE 3D viewer enabled
+ * debian/control: doxygen & graphviz moved to Build-Depends-Indep
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Wed, 12 Nov 2008 20:36:57 +0100
+
+sofa-framework (1.0~beta3-3) unstable; urgency=low
+
+ * fixed build-indep issue (Closes: #503555)
+ * fixed MIPS and ARM build error (sqrt/sqrtl)
+ * fixed installation for man page (Closes: #504927)
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Sat, 08 Nov 2008 01:50:23 +0100
+
+sofa-framework (1.0~beta3-2) unstable; urgency=low
+
+ * fixed segfault on amd64
+ * build arch all packages only in the binary-indep target (Closes: #503555)
+ * fixed MIPS and ARM build error (sqrt/sqrtl)
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Thu, 30 Oct 2008 19:23:49 +0100
+
+sofa-framework (1.0~beta3-1) unstable; urgency=low
+
+ * Initial release (Closes: #455064)
+
+ -- Dominique Belhachemi <domibel at cs.tu-berlin.de> Wed, 13 Aug 2008 10:26:03 +0100
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/compat
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/compat (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/compat 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1 @@
+8
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/control
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/control (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/control 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,110 @@
+Source: sofa-framework
+Section: graphics
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9),
+ freeglut3-dev,
+ libboost-dev,
+ libboost-graph-dev,
+ libboost-thread-dev,
+ libboost-system-dev,
+ libeigen3-dev,
+ libglew-dev,
+ libnewmat10-dev,
+ libpng-dev,
+ libqglviewer-dev,
+ libqt4-dev,
+ libqt4-opengl-dev,
+ libqwt5-qt4-dev,
+ libtinyxml-dev (>= 2.6),
+ libsuitesparse-dev,
+ libxml2-dev,
+ pkg-config,
+Build-Depends-Indep: doxygen, graphviz
+Build-Conflicts: qt3-dev-tools
+Standards-Version: 3.9.3
+Homepage: http://www.sofa-framework.org/
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/sofa-framework/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/sofa-framework/trunk/
+
+Package: sofa-apps
+Architecture: any
+Depends: libsofa1 (= ${binary:Version}),
+ sofa-data,
+ ${misc:Depends},
+ ${shlibs:Depends}
+Description: GUI for the Simulation Open Framework Architecture (SOFA)
+ SOFA is an Open Source framework primarily targeted at
+ real-time simulation, with an emphasis on medical simulation.
+ It is mostly intended for the research community to help
+ develop newer algorithms, but can also be used as an efficient
+ prototyping tool.
+ .
+ This package contains the SOFA main application.
+
+Package: libsofa1-dev
+Section: libdevel
+Architecture: any
+Depends: libsofa1 (= ${binary:Version}), ${misc:Depends}
+Suggests: sofa-tutorials
+Description: Simulation Open Framework Architecture - development
+ SOFA is an Open Source framework primarily targeted at
+ real-time simulation, with an emphasis on medical simulation.
+ It is mostly intended for the research community to help
+ develop newer algorithms, but can also be used as an efficient
+ prototyping tool.
+ .
+ This package contains the development files needed to build your own
+ SOFA applications.
+
+Package: libsofa1
+Section: libs
+Architecture: any
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Description: Simulation Open Framework Architecture - runtime
+ SOFA is an Open Source framework primarily targeted at
+ real-time simulation, with an emphasis on medical simulation.
+ It is mostly intended for the research community to help
+ develop newer algorithms, but can also be used as an efficient
+ prototyping tool.
+ .
+ This package contains the libraries needed to run SOFA applications.
+
+Package: sofa-tutorials
+Architecture: all
+Depends: ${misc:Depends}
+Description: Simulation Open Framework Architecture - tutorials
+ SOFA is an Open Source framework primarily targeted at
+ real-time simulation, with an emphasis on medical simulation.
+ It is mostly intended for the research community to help
+ develop newer algorithms, but can also be used as an efficient
+ prototyping tool.
+ .
+ This package contains tutorials from the SOFA source.
+
+Package: sofa-data
+Architecture: all
+Depends: ${misc:Depends}
+Description: Simulation Open Framework Architecture - data
+ SOFA is an Open Source framework primarily targeted at
+ real-time simulation, with an emphasis on medical simulation.
+ It is mostly intended for the research community to help
+ develop newer algorithms, but can also be used as an efficient
+ prototyping tool.
+ .
+ This package contains data for the SOFA applications.
+
+#Package: sofa-doc
+#Section: doc
+#Architecture: all
+#Depends: ${misc:Depends}
+#Description: SOFA class reference documentation
+# SOFA is an Open Source framework primarily targeted at
+# real-time simulation, with an emphasis on medical simulation.
+# It is mostly intended for the research community to help
+# develop newer algorithms, but can also be used as an efficient
+# prototyping tool.
+# .
+# This package contains exhaustive HTML documentation for the all the
+# documented C++ classes.
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/copyright
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/copyright (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/copyright 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,78 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Francois Faure <francois.faure at inria.fr>
+Debianized-By: Dominique Belhachemi <domibel at debian.org>
+Debianized-Date: Tue, 24 Jun 2008 20:51:56 +0200
+Original-Source: http://www.sofa-framework.org/
+
+Files: framework/*
+Copyright: 2006-2008 MGH, INRIA, USTL, UJF, CNRS
+License: LGPL-2.1+
+ see `/usr/share/common-licenses/LGPL-2.1'
+
+Files: modules/*
+Copyright: 2006-2008 MGH, INRIA, USTL, UJF, CNRS
+License: LGPL-2.1+
+ see `/usr/share/common-licenses/LGPL-2.1'
+
+Files: applications/*
+Copyright: 2006-2008 MGH, INRIA, USTL, UJF, CNRS
+License: GPL-2+
+ see `/usr/share/common-licenses/GPL-2'
+
+Files: extlibs/LML/*
+Copyright: 2003 TIMC (Emmanuel Promayon)
+License: GPL-2+
+ see `/usr/share/common-licenses/GPL-2'
+
+Files: extlibs/miniFlowVR/*
+Copyright: 2005 Laboratoire Informatique et Distribution (UMR5132), INRIA Project MOVI.
+License: LGPL
+ see `/usr/share/common-licenses/LGPL'
+
+Files: extlibs/miniFlowVR/src/librender/*
+Copyright: 2005 Laboratoire Informatique et Distribution (UMR5132), INRIA Project MOVI.
+License: GPL
+ see `/usr/share/common-licenses/GPL'
+
+Files: extlibs/PML/*
+Copyright: 2001 TIMC (Emmanuel Promayon, Matthieu Chabanas)
+License: GPL-2+
+ see `/usr/share/common-licenses/GPL-2'
+
+Files: extlibs/csparse/*
+Copyright: 2006, Timothy A. Davis.
+License: LGPL-2.1+
+ see `/usr/share/common-licenses/LGPL-2.1'
+
+Files: extlibs/tinyxml/*
+Copyright: 2000-2006 Lee Thomason (www.grinninglizard.com)
+License: ZLIB
+ This software is provided 'as-is', without any express or implied
+ warranty. In no event will the authors be held liable for any
+ damages arising from the use of this software.
+ .
+ Permission is granted to anyone to use this software for any
+ purpose, including commercial applications, and to alter it and
+ redistribute it freely, subject to the following restrictions:
+ .
+ 1. The origin of this software must not be misrepresented; you must
+ not claim that you wrote the original software. If you use this
+ software in a product, an acknowledgment in the product documentation
+ would be appreciated but is not required.
+ .
+ 2. Altered source versions must be plainly marked as such, and
+ must not be misrepresented as being the original software.
+ .
+ 3. This notice may not be removed or altered from any source
+ distribution.
+
+Files: *
+Copyright: 2006-2008 MGH, INRIA, USTL, UJF, CNRS
+License: LGPL
+ see `/usr/share/common-licenses/LGPL'
+
+Files: debian/*
+Copyright: 2008, Dominique Belhachemi <domibel at debian.org>
+License: GPL-2+
+ The Debian packaging is licensed under the GPL, see `/usr/share/common-licenses/GPL-2'
+
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/get-orig-source
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/get-orig-source (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/get-orig-source 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,59 @@
+#!/bin/sh
+# get source for sofa-framework which assembles sofa-framework, sofa-modules and sofa-applications
+
+set -e
+# set -x
+NAME=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
+
+if ! echo $@ | grep -q upstream-version ; then
+ VERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/\([0-9\.]\+\)-[0-9]\+$/\1/'`
+ # regard dversionmangle
+ VERSION=`echo ${VERSION} | sed 's/\([0-9]\)~\([br]\)/\1-\2/'`
+else
+ VERSION=`echo $@ | sed 's?^.*--upstream-version \([-0-9.rcbeta]\+\) .*sofa-framework.*?\1?'`
+ if echo "$VERSION" | grep -q "upstream-version" ; then
+ echo "Unable to parse version number"
+ exit
+ fi
+fi
+
+
+TARBALLDIR=../tarballs
+mkdir -p ${TARBALLDIR}
+
+indexpage=`grep www.sofa-framework.org debian/watch | sed 's/^.*\(http:[^[:space:]]\+\)[[:space:]].*$/\1/'`
+cd ${TARBALLDIR}
+wget -q -N "$indexpage"
+if [ -e ../${NAME}-${VERSION}.zip ] ; then
+ mv ../${NAME}-${VERSION}.zip .
+else
+ wget -q -N --no-check-certificate `grep framework.*\.zip download | sed "s?^.*\(https://gforge.inria.fr/frs/download.php/[0-9]\+/sofa-framework-${VERSION}\.zip\).*?\1?"`
+fi
+wget -q -N --no-check-certificate `grep modules.*\.zip download | sed "s?^.*\(https://gforge.inria.fr/frs/download.php/[0-9]\+/sofa-modules-${VERSION}\.zip\).*?\1?"`
+wget -q -N --no-check-certificate `grep applications.*\.zip download | sed "s?^.*\(https://gforge.inria.fr/frs/download.php/[0-9]\+/sofa-applications-${VERSION}\.zip\).*?\1?"`
+rm download
+
+OUTPUTDIR=sofa-${VERSION}
+rm -rf ${OUTPUTDIR}
+mkdir -p ${OUTPUTDIR}
+cd ${OUTPUTDIR}
+
+find .. -mindepth 1 -maxdepth 1 -name "sofa-*.zip" -exec unzip -q \{\} \;
+find .. -mindepth 1 -maxdepth 1 -name "sofa-*.zip" -delete
+
+rm -rf extlibs/miniBoost # libboost-dev
+rm -rf extlibs/libQGLViewer* # libqglviewer-dev
+rm -rf extlibs/eigen* # libeigen3-dev
+# rm -rf extlibs/qwt* # libqwt5-qt4-dev
+rm -rf extlibs/newmat # libnewmat10-dev
+rm -rf extlibs/csparse # libsuitesparse-dev
+rm -rf extlibs/tinyxml # libtinyxml-dev (>= 2.6)
+# the external libraries are still there:
+# LML miniFlowVR PML tinyxml
+
+cd ..
+
+# might need to mangle version (untested)
+VERSION=`echo ${VERSION} | sed 's/\([0-9]\)-\([br]\)/\1~\2/'`
+GZIP="--best --no-name" tar czf sofa-framework_${VERSION}.orig.tar.gz ${OUTPUTDIR}
+rm -rf ${OUTPUTDIR}
Property changes on: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/get-orig-source
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/index.html
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/index.html (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/index.html 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,16 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
+<html><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
+<title>Sofa API Documentation</title></head>
+
+
+<frameset rows="200,*">
+ <frame src="http://www.sofa-framework.org/documentation?top=1" name="topfrm">
+ <frameset cols="220,*">
+ <frame src="http://www.sofa-framework.org/sofa/doc/doxygen/html/tree.html" name="treefrm">
+ <frame src="http://www.sofa-framework.org/sofa/doc/doxygen/html/main.html" name="basefrm"> </frameset>
+ <noframes>
+ <body><a href="http://www.sofa-framework.org/sofa/doc/doxygen/html/main.html">Frames are disabled. Click here to go to the main page.</a></body>
+ </noframes>
+
+</frameset>
+</html>
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1-dev.install
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1-dev.install (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1-dev.install 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,2 @@
+#lib/lib*.a usr/lib
+lib/*/lib*.so usr/lib
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1.install
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1.install (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1.install 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1 @@
+lib/*/lib*.so.[0-9]* usr/lib
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1.lintian-overrides
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1.lintian-overrides (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/libsofa1.lintian-overrides 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1 @@
+libsofa1: package-name-doesnt-match-sonames libload1 libminiFlowVR1 libphysicalmodel1 libsofacomponent1 libsofacomponentbase1 libsofacomponentbehaviormodel1 libsofacomponentcollision1 libsofacomponentconstraint1 libsofacomponentcontextobject1 libsofacomponentcontroller1 libsofacomponentengine1 libsofacomponentfem1 libsofacomponentforcefield1 libsofacomponentinteractionforcefield1 libsofacomponentlinearsolver1 libsofacomponentmapping1 libsofacomponentmass1 libsofacomponentmastersolver1 libsofacomponentmisc1 libsofacomponentodesolver1 libsofacomponentvisualmodel1 libsofacore1 libsofadefaulttype1 libsofagui1 libsofaguiglut1 libsofaguimain1 libsofaguiqt1 libsofahelper1 libsofamodeler1 libsofapml1 libsofasimulation1 libsofatree1
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/13_gcc4.4.diff
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/13_gcc4.4.diff (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/13_gcc4.4.diff 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,73 @@
+#! /bin/sh /usr/share/dpatch/dpatch-run
+## 13_gcc4.4.dpatch by <domibel at ve2056622895.ihrserver.de>
+##
+## All lines beginning with `## DP:' are a description of the patch.
+## DP: added #include headers required by GCC 4.4 (Closes: #505953)
+
+ at DPATCH@
+diff -urNad sofa-framework-1.0~beta4~/framework/sofa/helper/LCPSolver.inl sofa-framework-1.0~beta4/framework/sofa/helper/LCPSolver.inl
+--- sofa-framework-1.0~beta4~/framework/sofa/helper/LCPSolver.inl 2009-06-09 21:10:29.000000000 -0400
++++ sofa-framework-1.0~beta4/framework/sofa/helper/LCPSolver.inl 2009-06-09 21:10:49.000000000 -0400
+@@ -28,6 +28,7 @@
+ #define SOFA_HELPER_LCPSOLVER_INL
+
+ #include <sofa/helper/LCPSolver.h>
++#include <cstdio>
+
+ namespace sofa
+ {
+diff -urNad sofa-framework-1.0~beta4~/framework/sofa/helper/Quater.inl sofa-framework-1.0~beta4/framework/sofa/helper/Quater.inl
+--- sofa-framework-1.0~beta4~/framework/sofa/helper/Quater.inl 2009-06-09 21:10:29.000000000 -0400
++++ sofa-framework-1.0~beta4/framework/sofa/helper/Quater.inl 2009-06-09 21:10:49.000000000 -0400
+@@ -28,6 +28,7 @@
+ #define SOFA_HELPER_QUATER_INL
+
+ #include "Quater.h"
++#include <cstdio>
+ #include <math.h>
+ #include <iostream>
+
+diff -urNad sofa-framework-1.0~beta4~/framework/sofa/helper/gl/Capture.cpp sofa-framework-1.0~beta4/framework/sofa/helper/gl/Capture.cpp
+--- sofa-framework-1.0~beta4~/framework/sofa/helper/gl/Capture.cpp 2009-06-09 21:10:29.000000000 -0400
++++ sofa-framework-1.0~beta4/framework/sofa/helper/gl/Capture.cpp 2009-06-09 21:10:49.000000000 -0400
+@@ -30,6 +30,7 @@
+ #include <sofa/helper/io/ImagePNG.h>
+ #endif
+
++#include <cstdio>
+ #include <sys/types.h>
+ #include <sys/stat.h>
+
+diff -urNad sofa-framework-1.0~beta4~/framework/sofa/helper/io/ImageBMP.cpp sofa-framework-1.0~beta4/framework/sofa/helper/io/ImageBMP.cpp
+--- sofa-framework-1.0~beta4~/framework/sofa/helper/io/ImageBMP.cpp 2009-06-09 21:10:29.000000000 -0400
++++ sofa-framework-1.0~beta4/framework/sofa/helper/io/ImageBMP.cpp 2009-06-09 21:10:49.000000000 -0400
+@@ -26,6 +26,7 @@
+ ******************************************************************************/
+ #include <sofa/helper/io/ImageBMP.h>
+ #include <sofa/helper/system/FileRepository.h>
++#include <cstdio>
+ #include <iostream>
+
+ namespace sofa
+diff -urNad sofa-framework-1.0~beta4~/framework/sofa/helper/io/ImageRAW.cpp sofa-framework-1.0~beta4/framework/sofa/helper/io/ImageRAW.cpp
+--- sofa-framework-1.0~beta4~/framework/sofa/helper/io/ImageRAW.cpp 2009-06-09 21:10:29.000000000 -0400
++++ sofa-framework-1.0~beta4/framework/sofa/helper/io/ImageRAW.cpp 2009-06-09 21:10:49.000000000 -0400
+@@ -27,6 +27,7 @@
+ #include <sofa/helper/io/ImageRAW.h>
+ #include <sofa/helper/system/FileRepository.h>
+ #include <iostream>
++#include <cstdio>
+
+ namespace sofa
+ {
+diff -urNad sofa-framework-1.0~beta4~/framework/sofa/helper/io/MeshTrian.cpp sofa-framework-1.0~beta4/framework/sofa/helper/io/MeshTrian.cpp
+--- sofa-framework-1.0~beta4~/framework/sofa/helper/io/MeshTrian.cpp 2009-06-09 21:10:29.000000000 -0400
++++ sofa-framework-1.0~beta4/framework/sofa/helper/io/MeshTrian.cpp 2009-06-09 21:10:49.000000000 -0400
+@@ -27,6 +27,7 @@
+ #include <sofa/helper/io/MeshTrian.h>
+ #include <sofa/helper/system/FileRepository.h>
+ #include <stdlib.h>
++#include <cstdio>
+ #include <iostream>
+ #include <string>
+
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/50_all_changes.diff
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/50_all_changes.diff (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/50_all_changes.diff 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,270 @@
+#! /bin/sh /usr/share/dpatch/dpatch-run
+## 50_all_changes.dpatch by <domibel at debian.org>
+##
+## All lines beginning with `## DP:' are a description of the patch.
+## DP: Link sofa to Debians newmat, boost, xml2 and qwt library.
+## DP: Use OGRE >= 1.6.0 if switched on.
+
+ at DPATCH@
+Index: sofa-framework-1.0~beta4/Sofa.pro
+===================================================================
+--- sofa-framework-1.0~beta4.orig/Sofa.pro 2009-03-20 18:41:25.000000000 -0400
++++ sofa-framework-1.0~beta4/Sofa.pro 2010-03-16 20:02:03.000000000 -0400
+@@ -3,13 +3,13 @@
+
+ include($${SOFA_DIR}/sofa.cfg)
+
+-SUBDIRS += extlibs/newmat
++#SUBDIRS += extlibs/newmat
+
+
+-SUBDIRS += extlibs/qwt
++#SUBDIRS += extlibs/qwt
+
+ contains(DEFINES,SOFA_XML_PARSER_TINYXML){
+- SUBDIRS += extlibs/tinyxml
++# SUBDIRS += extlibs/tinyxml
+ }
+
+ # FlowVR
+@@ -21,14 +21,15 @@
+ #CSParse
+
+ contains(DEFINES,SOFA_HAVE_CSPARSE){
+- SUBDIRS += extlibs/csparse
++# use Debian's system library instead of the one in extlibs
++# SUBDIRS += extlibs/csparse
+ }
+
+
+ #QGLViewer
+
+ contains(DEFINES,SOFA_GUI_QGLVIEWER){
+- SUBDIRS += extlibs/libQGLViewer/QGLViewer
++# SUBDIRS += extlibs/libQGLViewer/QGLViewer
+ }
+
+ # PML
+Index: sofa-framework-1.0~beta4/framework/sofa/helper/gl/DrawManager.cpp
+===================================================================
+--- sofa-framework-1.0~beta4.orig/framework/sofa/helper/gl/DrawManager.cpp 2009-03-20 18:40:53.000000000 -0400
++++ sofa-framework-1.0~beta4/framework/sofa/helper/gl/DrawManager.cpp 2010-03-16 20:02:03.000000000 -0400
+@@ -517,7 +517,7 @@
+ node->scale(radius/50.0,radius/50.0,radius/50.0);
+ node->translate(p[0],p[1],p[2]);
+ node->attachObject(sph);
+- sph->setNormaliseNormals(true);
++ //sph->setNormaliseNormals(true);
+ break;
+ #endif
+ }
+Index: sofa-framework-1.0~beta4/sofa-default.cfg
+===================================================================
+--- sofa-framework-1.0~beta4.orig/sofa-default.cfg 2009-03-20 18:41:25.000000000 -0400
++++ sofa-framework-1.0~beta4/sofa-default.cfg 2010-03-16 20:02:03.000000000 -0400
+@@ -47,7 +47,7 @@
+ # DEFINES += SOFA_HAVE_FLOWVR
+
+ # Uncomment if you want to use Boost lib for multithread computing
+-# DEFINES += SOFA_HAVE_BOOST
++ DEFINES += SOFA_HAVE_BOOST
+
+ # Uncomment if you want to compile CUDA GPU prototype (require NVIDIA CUDA SDK)
+ # DEFINES += SOFA_GPU_CUDA
+@@ -61,10 +61,10 @@
+ # DEFINES += SOFA_GPU_CUDA_DOUBLE
+
+ # Uncomment if you want to use SofaPML to load PML and LML files
+-# DEFINES += SOFA_PML
++DEFINES += SOFA_PML
+
+ # Uncomment if you want to use LAPACK for Matrix Solvers
+-#DEFINES += SOFA_HAVE_LAPACK
++# DEFINES += SOFA_HAVE_LAPACK
+
+ # Uncomment if you want to use MKL for Matrix Solvers
+ #DEFINES += SOFA_HAVE_MKL
+@@ -77,7 +77,7 @@
+ # DEFINES += SOFA_HAVE_CHAI3D
+
+ # Uncomment if you want to support moving frames when computing inertia forces in Mass
+-# DEFINES += SOFA_SUPPORT_MOVING_FRAMES
++ DEFINES += SOFA_SUPPORT_MOVING_FRAMES
+
+ # Uncomment if you want to have the possibility to trave the visitor execution
+ DEFINES += DUMP_VISITOR_INFO
+@@ -110,6 +110,9 @@
+ # Choose if you want to compile the debug or release version
+ #CONFIG = debug
+ CONFIG = release
++QMAKE_CXXFLAGS_RELEASE += -O1
++QMAKE_CXXFLAGS += -W
++QMAKE_CFLAGS += -W
+
+ # Uncomment if you want debug symbols even in release build
+ # QMAKE_CXXFLAGS += -g
+Index: sofa-framework-1.0~beta4/sofa.cfg
+===================================================================
+--- sofa-framework-1.0~beta4.orig/sofa.cfg 2009-03-20 18:41:25.000000000 -0400
++++ sofa-framework-1.0~beta4/sofa.cfg 2010-03-16 20:02:03.000000000 -0400
+@@ -19,7 +19,8 @@
+
+ # Auto-detect Qt 4.x
+ # The QT variable was introduced in Qt 4
+-!isEmpty(QT): DEFINES += SOFA_QT4
++#!isEmpty(QT): DEFINES += SOFA_QT4
++DEFINES += SOFA_QT4
+
+ !include( sofa-local.cfg ) {
+ # Copy sofa-default.cfg to sofa-local.cfg and modify it to change local options
+@@ -197,12 +198,10 @@
+ OBJECTS_DIR = OBJ/$$join(CONFIGDEBUG,,,)
+
+ CONFIGLIBRARIES+= \
+- warn_on \
+ stl \
+ rtti \
+ thread
+
+-CONFIGPROJECT += warn_on
+ CONFIGPROJECTGUI = $$CONFIGPROJECT
+ CONFIGPROJECTCMD = $$CONFIGPROJECT
+ CONFIGPROJECTCMD += console
+@@ -211,7 +210,11 @@
+ $$SOFA_DIR/include \
+ $$SOFA_DIR/framework \
+ $$SOFA_DIR/modules \
+- $$SOFA_DIR/applications
++ $$SOFA_DIR/applications \
++ /usr/include/qt4 \
++ /usr/include/qwt
++
++
+
+ DEPENDPATH *= \
+ $$SOFA_DIR/framework \
+@@ -241,7 +244,7 @@
+ # BOOST
+ ########################################################################
+ contains(DEFINES,SOFA_HAVE_BOOST){
+- SOFA_EXT_LIBS *= -lboost_thread
++ SOFA_EXT_LIBS *= -lboost_thread-mt
+ }else{
+ # use miniBoost headers included in extlibs
+ INCLUDEPATH *= $$SOFA_DIR/extlibs/miniBoost
+@@ -251,9 +254,9 @@
+ # CSPARSE
+ ########################################################################
+ contains(DEFINES,SOFA_HAVE_CSPARSE){
+- SOFA_EXT_LIBS *= -lcsparse$$LIBSUFFIX
++ SOFA_EXT_LIBS *= -lcsparse
+ # use csparse headers included in extlibs
+- INCLUDEPATH *= $$SOFA_DIR/extlibs/csparse
++ # INCLUDEPATH *= $$SOFA_DIR/extlibs/csparse
+ }
+
+ ########################################################################
+@@ -267,7 +270,7 @@
+ contains(DEFINES,SOFA_XML_PARSER_TINYXML){
+ # DEFINES *= TIXML_USE_STL
+ SOFA_EXT_LIBS += -ltinyxml$$LIBSUFFIX
+- INCLUDEPATH *= $$SOFA_DIR/extlibs/tinyxml
++# INCLUDEPATH *= $$SOFA_DIR/extlibs/tinyxml
+ }
+
+ ########################################################################
+@@ -322,8 +325,8 @@
+ # NewMAT
+ ########################################################################
+
+-INCLUDEPATH *= $$SOFA_DIR/extlibs/newmat
+-SOFA_EXT_LIBS *= -lnewmat$$LIBSUFFIX
++#INCLUDEPATH *= $$SOFA_DIR/extlibs/newmat
++SOFA_EXT_LIBS *= -lnewmat
+
+ ########################################################################
+ # METIS
+@@ -377,8 +380,9 @@
+ else {
+ QT += opengl
+ }
+- INCLUDEPATH += $$SOFA_DIR/extlibs/qwt
+- SOFA_GUI_EXT_LIBS *= -lqwt$${LIBSUFFIX}
++# INCLUDEPATH += $$SOFA_DIR/extlibs/qwt
++# SOFA_GUI_EXT_LIBS *= -lqwt
++ SOFA_GUI_EXT_LIBS *= -lqwt-qt4
+ }
+
+ ########################################################################
+@@ -398,10 +402,10 @@
+ else {
+ QT += opengl
+ }
+- unix:SOFA_GUI_EXT_LIBS *= -lQGLViewer$${LIBSUFFIX}
++ unix:SOFA_GUI_EXT_LIBS *= -lqglviewer-qt4$${LIBSUFFIX}
+ win32:SOFA_GUI_EXT_LIBS *= -lQGLViewer2$${LIBSUFFIX}
+- INCLUDEPATH += $$SOFA_DIR/extlibs/qwt $$SOFA_DIR/extlibs/libQGLViewer
+- SOFA_GUI_EXT_LIBS *= -lqwt$${LIBSUFFIX}
++ INCLUDEPATH += /usr/include/qglviewer-qt4
++ SOFA_GUI_EXT_LIBS *= -lqwt-qt4
+ }
+
+ ########################################################################
+@@ -428,8 +432,8 @@
+ QMAKE_LIBDIR += $(OGRE_HOME)/lib
+ LIBS += OgreMain.lib
+ }
+- INCLUDEPATH += $$SOFA_DIR/extlibs/qwt
+- SOFA_GUI_EXT_LIBS *= -lqwt$${LIBSUFFIX}
++# INCLUDEPATH += $$SOFA_DIR/extlibs/qwt
++ SOFA_GUI_EXT_LIBS *= -lqwt-qt4
+
+ unix {
+ macx: QMAKE_CXXFLAGS += -Wno-unused
+@@ -601,6 +605,9 @@
+
+ SOFA_GUI_LIBS *= -lsofagui$$LIBSUFFIX -lsofaguimain$$LIBSUFFIX
+
++# for binutils-gold
++SOFA_EXTRA_LIBS += -ldl
++
+ # When using staticlib, rebuild applications if a library has changed
+ contains(CONFIGLIBRARIES,staticlib){
+ contains(TEMPLATE,app){
+@@ -619,7 +626,7 @@
+ }
+ }
+
+-SOFA_LIBS = $${SOFA_MODULES_LIBS} $${SOFA_MODULES_LIBS} $${SOFA_FRAMEWORK_LIBS} $${SOFA_FRAMEWORK_LIBS} $${SOFA_EXT_LIBS}
++SOFA_LIBS = $${SOFA_MODULES_LIBS} $${SOFA_MODULES_LIBS} $${SOFA_FRAMEWORK_LIBS} $${SOFA_FRAMEWORK_LIBS} $${SOFA_EXT_LIBS} $${SOFA_EXTRA_LIBS}
+
+ SOFA_GUI_LIBS += $${SOFA_GUI_EXT_LIBS}
+
+Index: sofa-framework-1.0~beta4/applications/sofa/gui/qt/GraphVisitor.cpp
+===================================================================
+--- sofa-framework-1.0~beta4.orig/applications/sofa/gui/qt/GraphVisitor.cpp 2009-03-20 18:40:52.000000000 -0400
++++ sofa-framework-1.0~beta4/applications/sofa/gui/qt/GraphVisitor.cpp 2010-03-16 20:02:03.000000000 -0400
+@@ -28,10 +28,7 @@
+
+ #include <sstream>
+
+-#include <tinyxml.cpp>
+-#include <tinyxmlerror.cpp>
+-#include <tinystr.cpp>
+-#include <tinyxmlparser.cpp>
++#include <tinyxml.h>
+
+ #include <algorithm>
+
+Index: sofa-framework-1.0~beta4/applications/sofa/gui/qt/GraphVisitor.h
+===================================================================
+--- sofa-framework-1.0~beta4.orig/applications/sofa/gui/qt/GraphVisitor.h 2010-03-16 20:02:24.000000000 -0400
++++ sofa-framework-1.0~beta4/applications/sofa/gui/qt/GraphVisitor.h 2010-03-16 20:02:31.000000000 -0400
+@@ -43,7 +43,6 @@
+
+ //Tinyxml library
+ #include <tinyxml.h>
+-#include <tinystr.h>
+
+ #include <iostream>
+ #include <set>
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/55_fix_mips_sqrt.diff
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/55_fix_mips_sqrt.diff (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/55_fix_mips_sqrt.diff 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,34 @@
+#! /bin/sh /usr/share/dpatch/dpatch-run
+## 55_fix_mips_sqrt.dpatch by <domibel at sid1500>
+##
+## All lines beginning with `## DP:' are a description of the patch.
+## DP: fixes a build error on MIPS, ARM, and SuperH (sqrt/sqrtl)
+
+ at DPATCH@
+Index: sofa-framework-1.0~beta4/framework/sofa/helper/rmath.h
+===================================================================
+--- sofa-framework-1.0~beta4.orig/framework/sofa/helper/rmath.h 2009-12-06 14:23:24.000000000 -0500
++++ sofa-framework-1.0~beta4/framework/sofa/helper/rmath.h 2009-12-06 14:23:29.000000000 -0500
+@@ -132,8 +132,8 @@
+
+ inline double rsqrt(const double& a)
+ {
+-#if defined(__GNUC__)
+- return sqrt(a);
++#if defined(__arm__) || defined(__mips__) || defined(__sh__)
++ return sqrt((double)a);
+ #else
+ return (double)sqrtl((long double)a);
+ #endif
+@@ -141,7 +141,11 @@
+
+ inline long double rsqrt(const long double& a)
+ {
++#if defined(__arm__) || defined(__mips__) || defined(__sh__)
++ return (long double)sqrt((double)a);
++#else
+ return sqrtl(a);
++#endif
+ }
+
+ template<class T>
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/78_atomicity.diff
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/78_atomicity.diff (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/78_atomicity.diff 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,23 @@
+## 78_atomicity.dpatch by <domibel at debian.org>
+##
+## All lines beginning with `## DP:' are a description of the patch.
+## DP: fix: error: bits/atomicity.h: No such file or directory
+
+Index: sofa-framework-1.0~beta4/framework/sofa/helper/system/atomic.h
+===================================================================
+--- sofa-framework-1.0~beta4.orig/framework/sofa/helper/system/atomic.h 2009-12-06 14:20:15.000000000 -0500
++++ sofa-framework-1.0~beta4/framework/sofa/helper/system/atomic.h 2009-12-06 14:20:36.000000000 -0500
+@@ -31,9 +31,10 @@
+
+ #if defined(SOFA_USE_ASM_ATOMIC)
+ #include <asm/atomic.h>
+-#include <bits/atomicity.h> // for __exchange_and_add
+-#elif defined(__GNUC__) && (defined(i386) || defined(__i386__) || defined(__x86_64__))
+-// custom ASM code, no include
++#endif
++
++#if defined( __GNUC__ ) && ( __GNUC__ * 100 + __GNUC_MINOR__ >= 402 )
++# include <ext/atomicity.h>
+ #elif defined(__GNUC__)
+ // Fall-back mode: stdc++ atomic operations (should be available on all gcc-supported platforms)
+ #include <bits/atomicity.h>
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/fix_mutable_serr_sout.diff
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/fix_mutable_serr_sout.diff (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/fix_mutable_serr_sout.diff 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,32 @@
+## 78_atomicity.dpatch by <domibel at debian.org>
+##
+## All lines beginning with `## DP:' are a description of the patch.
+## DP: fix #625059 , error: reference 'serr' cannot be declared 'mutable' [-fpermissive]
+
+Index: sofa-framework-1.0~beta4/framework/sofa/core/objectmodel/Base.h
+===================================================================
+--- sofa-framework-1.0~beta4.orig/framework/sofa/core/objectmodel/Base.h 2011-05-07 16:18:02.000000000 -0400
++++ sofa-framework-1.0~beta4/framework/sofa/core/objectmodel/Base.h 2011-05-07 16:18:06.000000000 -0400
+@@ -279,8 +279,8 @@
+ std::multimap< std::string, BaseData* > getAliases() { return m_aliasData; }
+
+ mutable sofa::helper::system::SofaOStream sendl;
+- mutable std::ostringstream &serr;
+- mutable std::ostringstream &sout;
++ std::ostringstream &serr;
++ std::ostringstream &sout;
+
+
+ protected:
+Index: sofa-framework-1.0~beta4/framework/sofa/core/core.h
+===================================================================
+--- sofa-framework-1.0~beta4.orig/framework/sofa/core/core.h 2011-05-07 16:21:56.000000000 -0400
++++ sofa-framework-1.0~beta4/framework/sofa/core/core.h 2011-05-07 16:22:12.000000000 -0400
+@@ -28,6 +28,7 @@
+ #define SOFA_CORE_H
+
+ #include <sofa/helper/system/config.h>
++#include <cstddef>
+
+ #ifdef SOFA_BUILD_CORE
+ # define SOFA_CORE_API SOFA_EXPORT_DYNAMIC_LIBRARY
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/qwt5-qt4.patch
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/qwt5-qt4.patch (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/qwt5-qt4.patch 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,28 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Changed: Tue, 13 Dec 2011 12:55:52 +0100
+Description: Sofa does not build properly with
+ libqwt-dev so adjusting include directory and fixing some header
+ file is needed
+
+--- sofa-framework-1.0~beta4.orig/applications/sofa/gui/qt/GraphDataWidget.h
++++ sofa-framework-1.0~beta4/applications/sofa/gui/qt/GraphDataWidget.h
+@@ -33,6 +33,8 @@
+ #include <qwt_plot.h>
+ #include <qwt_legend.h>
+ #include <qwt_scale_engine.h>
++#include <qwt_data.h>
++#include <qwt_double_rect.h>
+
+ namespace sofa
+ {
+--- sofa-framework-1.0~beta4.orig/sofa.cfg
++++ sofa-framework-1.0~beta4/sofa.cfg
+@@ -212,7 +212,7 @@
+ $$SOFA_DIR/modules \
+ $$SOFA_DIR/applications \
+ /usr/include/qt4 \
+- /usr/include/qwt
++ /usr/include/qwt-qt4
+
+
+
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/series
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/series (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/series 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,10 @@
+13_gcc4.4.diff
+50_all_changes.diff
+55_fix_mips_sqrt.diff
+78_atomicity.diff
+fix_mutable_serr_sout.diff
+tinyxml26.diff
+qwt5-qt4.patch
+sofa-framework-gcc-4.7.diff
+sofa-framework-1.0~beta4.libpng15.patch
+
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/sofa-framework-1.0~beta4.libpng15.patch
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/sofa-framework-1.0~beta4.libpng15.patch (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/sofa-framework-1.0~beta4.libpng15.patch 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,21 @@
+Description: fixes FTBFS against libpng1.5
+Author: Nobuhiro Iwamatsu <iwamatsu at nigauri.org>
+Origin: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=650568#12
+Bug-Debian: http://bugs.debian.org/650568
+Acked-by: Anton Gladky <gladk at debian.org>
+Last-Update: 2013-05-20
+
+--- a/framework/sofa/helper/io/ImagePNG.cpp
++++ b/framework/sofa/helper/io/ImagePNG.cpp
+@@ -129,7 +129,11 @@
+
+ if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8)
+ {
++#if PNG_LIBPNG_VER_MAJOR >= 1 && PNG_LIBPNG_VER_MINOR >= 4
++ png_set_expand_gray_1_2_4_to_8(PNG_reader);
++#else
+ png_set_gray_1_2_4_to_8(PNG_reader);
++#endif
+ changed = true;
+ }
+
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/sofa-framework-gcc-4.7.diff
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/sofa-framework-gcc-4.7.diff (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/sofa-framework-gcc-4.7.diff 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,260 @@
+Description: Fix build issue when using gcc-4.7
+Author: Matej Vela <vela at debian.org>
+Date: Sat, 26 May 2012 23:09:58 +0100
+Bug-Debian: http://bugs.debian.org/673841
+
+--- sofa-framework-1.0~beta4~/framework/sofa/core/componentmodel/behavior/MechanicalMapping.inl
++++ sofa-framework-1.0~beta4/framework/sofa/core/componentmodel/behavior/MechanicalMapping.inl
+@@ -88,14 +88,14 @@
+ void MechanicalMapping<In,Out>::propagateX()
+ {
+ if (this->fromModel!=NULL && this->toModel->getX()!=NULL && this->fromModel->getX()!=NULL)
+- apply(*this->toModel->getX(), *this->fromModel->getX());
++ this->apply(*this->toModel->getX(), *this->fromModel->getX());
+ }
+
+ template <class In, class Out>
+ void MechanicalMapping<In,Out>::propagateV()
+ {
+ if (this->fromModel!=NULL && this->toModel->getV()!=NULL && this->fromModel->getV()!=NULL)
+- applyJ(*this->toModel->getV(), *this->fromModel->getV());
++ this->applyJ(*this->toModel->getV(), *this->fromModel->getV());
+ }
+
+ template <class In, class Out>
+@@ -110,14 +110,14 @@
+ void MechanicalMapping<In,Out>::propagateDx()
+ {
+ if (this->fromModel!=NULL && this->toModel->getDx()!=NULL && this->fromModel->getDx()!=NULL)
+- applyJ(*this->toModel->getDx(), *this->fromModel->getDx());
++ this->applyJ(*this->toModel->getDx(), *this->fromModel->getDx());
+ }
+
+ template <class In, class Out>
+ void MechanicalMapping<In,Out>::propagateXfree()
+ {
+ if (this->fromModel!=NULL && this->toModel->getXfree()!=NULL && this->fromModel->getXfree()!=NULL)
+- apply(*this->toModel->getXfree(), *this->fromModel->getXfree());
++ this->apply(*this->toModel->getXfree(), *this->fromModel->getXfree());
+ }
+
+
+--- sofa-framework-1.0~beta4~/modules/sofa/component/constraint/DistanceConstraint.inl
++++ sofa-framework-1.0~beta4/modules/sofa/component/constraint/DistanceConstraint.inl
+@@ -147,9 +147,9 @@
+ V2.insert(idx2,V12);c2.push_back(V2);
+ }
+
+- core::componentmodel::behavior::BaseLMConstraint::constraintGroup *constraintAcc = addGroupConstraint(this->ACC);
+- core::componentmodel::behavior::BaseLMConstraint::constraintGroup *constraintVel = addGroupConstraint(this->VEL);
+- core::componentmodel::behavior::BaseLMConstraint::constraintGroup *constraintPos = addGroupConstraint(this->POS);
++ core::componentmodel::behavior::BaseLMConstraint::constraintGroup *constraintAcc = this->addGroupConstraint(this->ACC);
++ core::componentmodel::behavior::BaseLMConstraint::constraintGroup *constraintVel = this->addGroupConstraint(this->VEL);
++ core::componentmodel::behavior::BaseLMConstraint::constraintGroup *constraintPos = this->addGroupConstraint(this->POS);
+
+ //BaseLMConstraint interface
+ constraintAcc->addConstraint(idxInVecConst[0], idxInVecConst[1],
+--- sofa-framework-1.0~beta4~/modules/sofa/component/constraint/UnilateralInteractionConstraint.inl
++++ sofa-framework-1.0~beta4/modules/sofa/component/constraint/UnilateralInteractionConstraint.inl
+@@ -71,7 +71,7 @@
+ c.contactId = id;
+
+
+- if (rabs(delta - deltaFree) > 0.001 * delta)
++ if (helper::rabs(delta - deltaFree) > 0.001 * delta)
+ {
+ dt = delta / (delta - deltaFree);
+ if (dt > 0.0 && dt < 1.0 ){
+--- sofa-framework-1.0~beta4~/modules/sofa/component/container/MappedObject.inl
++++ sofa-framework-1.0~beta4/modules/sofa/component/container/MappedObject.inl
+@@ -36,8 +36,8 @@
+
+ template <class DataTypes>
+ MappedObject<DataTypes>::MappedObject()
+-: f_X( initData(&f_X, "position", "position vector") )
+-, f_V( initData(&f_V, "velocity", "velocity vector") )
++: f_X( this->initData(&f_X, "position", "position vector") )
++, f_V( this->initData(&f_V, "velocity", "velocity vector") )
+ {
+ }
+
+--- sofa-framework-1.0~beta4~/modules/sofa/component/forcefield/BoxStiffSpringForceField.inl
++++ sofa-framework-1.0~beta4/modules/sofa/component/forcefield/BoxStiffSpringForceField.inl
+@@ -48,8 +48,8 @@
+ template <class DataTypes>
+ BoxStiffSpringForceField<DataTypes>::BoxStiffSpringForceField(MechanicalState* object1, MechanicalState* object2, double ks, double kd)
+ : StiffSpringForceField<DataTypes>(object1, object2, ks, kd),
+- box_object1( initData( &box_object1, Vec6(0,0,0,1,1,1), "box_object1", "Box for the object1 where springs will be attached") ),
+- box_object2( initData( &box_object2, Vec6(0,0,0,1,1,1), "box_object2", "Box for the object2 where springs will be attached") )
++ box_object1( this->initData( &box_object1, Vec6(0,0,0,1,1,1), "box_object1", "Box for the object1 where springs will be attached") ),
++ box_object2( this->initData( &box_object2, Vec6(0,0,0,1,1,1), "box_object2", "Box for the object2 where springs will be attached") )
+
+ {
+ }
+@@ -57,8 +57,8 @@
+ template <class DataTypes>
+ BoxStiffSpringForceField<DataTypes>::BoxStiffSpringForceField(double ks, double kd)
+ : StiffSpringForceField<DataTypes>(ks, kd),
+- box_object1( initData( &box_object1, Vec6(0,0,0,1,1,1), "box_object1", "Box for the object1 where springs will be attached") ),
+- box_object2( initData( &box_object2, Vec6(0,0,0,1,1,1), "box_object2", "Box for the object2 where springs will be attached") )
++ box_object1( this->initData( &box_object1, Vec6(0,0,0,1,1,1), "box_object1", "Box for the object1 where springs will be attached") ),
++ box_object2( this->initData( &box_object2, Vec6(0,0,0,1,1,1), "box_object2", "Box for the object2 where springs will be attached") )
+ {
+ }
+
+--- sofa-framework-1.0~beta4~/modules/sofa/component/forcefield/HexahedronFEMForceFieldAndMass.inl
++++ sofa-framework-1.0~beta4/modules/sofa/component/forcefield/HexahedronFEMForceFieldAndMass.inl
+@@ -48,8 +48,8 @@
+ HexahedronFEMForceFieldAndMass<DataTypes>::HexahedronFEMForceFieldAndMass()
+ : MassT()
+ , HexahedronFEMForceFieldT()
+- ,_elementMasses(initData(&_elementMasses,"massMatrices", "Mass matrices per element (M_i)"))
+- , _density(initData(&_density,(Real)1.0,"density","density == volumetric mass in english (kg.m-3)"))
++ ,_elementMasses(this->initData(&_elementMasses,"massMatrices", "Mass matrices per element (M_i)"))
++ , _density(this->initData(&_density,(Real)1.0,"density","density == volumetric mass in english (kg.m-3)"))
+ {
+ _lumpedMass = this->initData(&_lumpedMass,false,"lumpedMass","Does it use lumped masses?");
+ }
+--- sofa-framework-1.0~beta4~/modules/sofa/component/forcefield/RegularGridSpringForceField.h
++++ sofa-framework-1.0~beta4/modules/sofa/component/forcefield/RegularGridSpringForceField.h
+@@ -63,32 +63,32 @@
+ public:
+ RegularGridSpringForceField(core::componentmodel::behavior::MechanicalState<DataTypes>* object1, core::componentmodel::behavior::MechanicalState<DataTypes>* object2)
+ : StiffSpringForceField<DataTypes>(object1, object2),
+- linesStiffness (initData(&linesStiffness,Real(100),"linesStiffness","Lines Stiffness"))
+- , linesDamping (initData(&linesDamping ,Real(5),"linesDamping" ,"Lines Damping"))
+- , quadsStiffness(initData(&quadsStiffness,Real(100),"quadsStiffness","Quads Stiffness"))
+- , quadsDamping (initData(&quadsDamping ,Real(5),"quadsDamping" ,"Quads Damping"))
+- , cubesStiffness(initData(&cubesStiffness,Real(100),"cubesStiffness","Cubes Stiffness"))
+- , cubesDamping (initData(&cubesDamping ,Real(5),"cubesDamping" ,"Cubes Damping"))
++ linesStiffness (this->initData(&linesStiffness,Real(100),"linesStiffness","Lines Stiffness"))
++ , linesDamping (this->initData(&linesDamping ,Real(5),"linesDamping" ,"Lines Damping"))
++ , quadsStiffness(this->initData(&quadsStiffness,Real(100),"quadsStiffness","Quads Stiffness"))
++ , quadsDamping (this->initData(&quadsDamping ,Real(5),"quadsDamping" ,"Quads Damping"))
++ , cubesStiffness(this->initData(&cubesStiffness,Real(100),"cubesStiffness","Cubes Stiffness"))
++ , cubesDamping (this->initData(&cubesDamping ,Real(5),"cubesDamping" ,"Cubes Damping"))
+ , topology(NULL)
+ {
+- addAlias(&linesStiffness, "stiffness");addAlias(&linesDamping, "damping");
+- addAlias(&quadsStiffness, "stiffness");addAlias(&quadsDamping, "damping");
+- addAlias(&cubesStiffness, "stiffness");addAlias(&cubesDamping, "damping");
++ this->addAlias(&linesStiffness, "stiffness");this->addAlias(&linesDamping, "damping");
++ this->addAlias(&quadsStiffness, "stiffness");this->addAlias(&quadsDamping, "damping");
++ this->addAlias(&cubesStiffness, "stiffness");this->addAlias(&cubesDamping, "damping");
+ }
+
+ RegularGridSpringForceField()
+ :
+- linesStiffness (initData(&linesStiffness,Real(100),"linesStiffness","Lines Stiffness"))
+- , linesDamping (initData(&linesDamping ,Real(5),"linesDamping" ,"Lines Damping"))
+- , quadsStiffness(initData(&quadsStiffness,Real(100),"quadsStiffness","Quads Stiffness"))
+- , quadsDamping (initData(&quadsDamping ,Real(5),"quadsDamping" ,"Quads Damping"))
+- , cubesStiffness(initData(&cubesStiffness,Real(100),"cubesStiffness","Cubes Stiffness"))
+- , cubesDamping (initData(&cubesDamping ,Real(5),"cubesDamping" ,"Cubes Damping"))
++ linesStiffness (this->initData(&linesStiffness,Real(100),"linesStiffness","Lines Stiffness"))
++ , linesDamping (this->initData(&linesDamping ,Real(5),"linesDamping" ,"Lines Damping"))
++ , quadsStiffness(this->initData(&quadsStiffness,Real(100),"quadsStiffness","Quads Stiffness"))
++ , quadsDamping (this->initData(&quadsDamping ,Real(5),"quadsDamping" ,"Quads Damping"))
++ , cubesStiffness(this->initData(&cubesStiffness,Real(100),"cubesStiffness","Cubes Stiffness"))
++ , cubesDamping (this->initData(&cubesDamping ,Real(5),"cubesDamping" ,"Cubes Damping"))
+ , topology(NULL)
+ {
+- addAlias(&linesStiffness, "stiffness");addAlias(&linesDamping, "damping");
+- addAlias(&quadsStiffness, "stiffness");addAlias(&quadsDamping, "damping");
+- addAlias(&cubesStiffness, "stiffness");addAlias(&cubesDamping, "damping");
++ this->addAlias(&linesStiffness, "stiffness");this->addAlias(&linesDamping, "damping");
++ this->addAlias(&quadsStiffness, "stiffness");this->addAlias(&quadsDamping, "damping");
++ this->addAlias(&cubesStiffness, "stiffness");this->addAlias(&cubesDamping, "damping");
+ }
+
+ Real getStiffness() const { return linesStiffness.getValue(); }
+--- sofa-framework-1.0~beta4~/modules/sofa/component/mass/MatrixMass.h
++++ sofa-framework-1.0~beta4/modules/sofa/component/mass/MatrixMass.h
+@@ -78,11 +78,11 @@
+
+
+ MatrixMass()
+- : f_mass( initData(&f_mass, "massMatrices", "values of the particles masses") )
+- , _defaultValue( initData(&_defaultValue, (Real)1.0,"defaultValue", "real default value") )
++ : f_mass( this->initData(&f_mass, "massMatrices", "values of the particles masses") )
++ , _defaultValue( this->initData(&_defaultValue, (Real)1.0,"defaultValue", "real default value") )
+ ,_usingDefaultDiagonalMatrices(false)
+ {
+- _lumped = initData( &this->_lumped, false, "lumped", "");
++ _lumped = this->initData( &this->_lumped, false, "lumped", "");
+ };
+
+ ~MatrixMass();
+--- sofa-framework-1.0~beta4~/modules/sofa/component/topology/DynamicSparseGridGeometryAlgorithms.inl
++++ sofa-framework-1.0~beta4/modules/sofa/component/topology/DynamicSparseGridGeometryAlgorithms.inl
+@@ -96,7 +96,7 @@
+ it = regular2topo.find( regularGridIndex);
+ if( it != regular2topo.end())
+ {
+- const Real d = computeElementRestDistanceMeasure(it->second, pos);
++ const Real d = this->computeElementRestDistanceMeasure(it->second, pos);
+ // std::cout << "Distance : " << d << "\n";
+ if(d<distance)
+ {
+@@ -116,9 +116,9 @@
+ return HexahedronSetGeometryAlgorithms<DataTypes>::findNearestElementInRestPos( pos, baryC, distance);
+ }
+
+- distance = computeElementRestDistanceMeasure( index, pos);
++ distance = this->computeElementRestDistanceMeasure( index, pos);
+
+- baryC = computeHexahedronRestBarycentricCoeficients(index, pos);
++ baryC = this->computeHexahedronRestBarycentricCoeficients(index, pos);
+
+ return index;
+ }
+--- sofa-framework-1.0~beta4~/modules/sofa/component/topology/EdgeSubsetData.inl
++++ sofa-framework-1.0~beta4/modules/sofa/component/topology/EdgeSubsetData.inl
+@@ -137,7 +137,7 @@
+
+ // test that there are no item with the key = s+i
+ assert(this->find(s+i)==this->end());
+- insert(std::pair<unsigned int,T>(s+i,t));
++ this->insert(std::pair<unsigned int,T>(s+i,t));
+ }
+ lastEdgeIndex+=nbEdges;
+ }
+@@ -160,10 +160,10 @@
+ {
+ /// change the key of the item associated with key lastEdgeIndex
+ T tmp=(*itend).second;
+- erase(itend);
+- insert(std::pair<unsigned int,T>(index[i],tmp));
++ this->erase(itend);
++ this->insert(std::pair<unsigned int,T>(index[i],tmp));
+ }
+- erase(it);
++ this->erase(it);
+ }
+ --lastEdgeIndex;
+ }
+--- sofa-framework-1.0~beta4~/modules/sofa/component/topology/TriangleSubsetData.inl
++++ sofa-framework-1.0~beta4/modules/sofa/component/topology/TriangleSubsetData.inl
+@@ -115,7 +115,7 @@
+
+ // test that there are no item with the key = s+i
+ assert(this->find(s+i)==this->end());
+- insert(std::pair<unsigned int,T>(s+i,t));
++ this->insert(std::pair<unsigned int,T>(s+i,t));
+ }
+ lastTriangleIndex+=nbTriangles;
+ }
+@@ -138,10 +138,10 @@
+ {
+ /// change the key of the item associated with key lastTriangleIndex
+ T tmp=(*itend).second;
+- erase(itend);
+- insert(std::pair<unsigned int,T>(index[i],tmp));
++ this->erase(itend);
++ this->insert(std::pair<unsigned int,T>(index[i],tmp));
+ }
+- erase(it);
++ this->erase(it);
+ }
+ --lastTriangleIndex;
+ }
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/tinyxml26.diff
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/tinyxml26.diff (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/patches/tinyxml26.diff 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,48 @@
+--- a/applications/sofa/gui/qt/GraphVisitor.cpp
++++ b/applications/sofa/gui/qt/GraphVisitor.cpp
+@@ -207,10 +207,10 @@
+ Q3ListViewItem *graphNode=NULL;
+ switch (typeOfNode)
+ {
+- case TiXmlNode::DOCUMENT:
++ case TiXmlNode::TINYXML_DOCUMENT:
+ break;
+
+- case TiXmlNode::ELEMENT:
++ case TiXmlNode::TINYXML_ELEMENT:
+ if (nameOfNode == "Time")
+ {
+ openTime( node, parent);
+@@ -222,17 +222,17 @@
+ }
+ break;
+
+- case TiXmlNode::COMMENT:
++ case TiXmlNode::TINYXML_COMMENT:
+ graphNode = addComment(parent, elementAbove, nameOfNode);
+ break;
+
+- case TiXmlNode::UNKNOWN:
++ case TiXmlNode::TINYXML_UNKNOWN:
+ break;
+
+- case TiXmlNode::TEXT:
++ case TiXmlNode::TINYXML_TEXT:
+ break;
+
+- case TiXmlNode::DECLARATION:
++ case TiXmlNode::TINYXML_DECLARATION:
+ break;
+ default:
+ break;
+--- a/modules/sofa/simulation/tree/xml/XML.cpp
++++ b/modules/sofa/simulation/tree/xml/XML.cpp
+@@ -84,7 +84,7 @@
+ BaseElement* createNode(TiXmlNode* root, const char *basefilename, bool isRoot = false)
+ {
+ //if (!xmlStrcmp(root->name,(const xmlChar*)"text")) return NULL;
+- if (root->Type() != TiXmlNode::ELEMENT) return NULL;
++ if (root->Type() != TiXmlNode::TINYXML_ELEMENT) return NULL;
+ TiXmlElement* element = root->ToElement();
+ if (!element || !element->Value() || !element->Value()[0]) return NULL;
+
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/rules
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/rules (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/rules 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,95 @@
+#!/usr/bin/make -f
+# Uncomment this to turn on verbose mode.
+# export DH_VERBOSE=1
+
+PACKAGE := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
+DEB_SOURCE_PACKAGE:=$(PACKAGE)
+
+devpkg := libsofa1-dev
+apppkg := sofa-apps
+docpkg := sofa-doc
+
+%:
+ dh $@
+
+get-orig-source:
+ . debian/get-orig-source
+
+override_dh_auto_configure:
+ qmake
+ (cd applications/projects/runSofa; qmake -o Makefile runSofa.pro)
+
+ # create a folder without object files
+ cp -a $(CURDIR)/applications/tutorials $(CURDIR)/tutorials
+
+override_dh_auto_build:
+ dh_auto_build
+ # Create the documentation files if debian/control does include the package definition
+ if grep -q "^Package: sofa-doc$$" debian/control ; then \
+ mkdir -p $(CURDIR)/doc/doxygen ; \
+ doxygen -u Doxyfile ; \
+ doxygen ; \
+ fi
+ # remove zero byte files
+ find $(CURDIR)/doc/doxygen/ -depth -empty | xargs rm -rf
+
+override_dh_clean:
+ rm -rf bin lib tutorials doc OBJ
+ # - rm -rf extlibs/tinyxml/
+
+ dh_clean
+
+ # some packages might remain after clean
+ find . -name "*.o" -delete
+ find . -name "Makefile" -delete
+ find . -name "Makefile.lib*" -delete
+ find . -name "Makefile.sofa_*" -delete
+ find . -name "moc_*" -delete
+ find . -type d -empty -delete
+ rm -rf applications/sofa/gui/qt/PluginManager.h \
+ applications/sofa/gui/qt/VisitorGUI.cpp \
+ applications/sofa/gui/qt/GUI.cpp \
+ applications/sofa/gui/qt/GUI.h \
+ applications/sofa/gui/qt/DialogAddObject.h \
+ applications/sofa/gui/qt/PluginManager.cpp \
+ applications/sofa/gui/qt/BaseGenGraphForm.h \
+ applications/sofa/gui/qt/VisitorGUI.h \
+ applications/sofa/gui/qt/DialogAddObject.cpp \
+ applications/sofa/gui/qt/BaseGenGraphForm.cpp \
+ applications/projects/Modeler/lib/PluginManager.h \
+ applications/projects/Modeler/lib/Modeler.cpp \
+ applications/projects/Modeler/lib/DialogAddPreset.cpp \
+ applications/projects/Modeler/lib/PluginManager.cpp \
+ applications/projects/Modeler/lib/DialogAddPreset.h \
+ applications/projects/Modeler/lib/Modeler.h \
+ applications/sofa/gui/qt/UI \
+ applications/projects/Modeler/lib/UI
+ rm -f Sofa.tag doxygen.log
+
+
+override_dh_install:
+ find tutorials -name "*.kdevelop" | xargs chmod 644
+ find share -type f -exec chmod 644 \{\} \;
+ find share -name "*.sh" -exec chmod 755 \{\} \;
+ find examples -type f -exec chmod 644 \{\} \;
+ find examples -name "*.sh" -exec chmod 755 \{\} \;
+
+ dh_install
+
+ # try only if doxygen was called above
+ if [ -d doc/doxygen/html ] ; then mv doc/doxygen/html/* $(CURDIR)/debian/$(docpkg)/usr/share/doc/sofa-doc/html ; fi
+
+ # install some files directly into development package
+ mkdir -p $(CURDIR)/debian/$(devpkg)/usr/include
+
+ for dir in framework modules applications ; do \
+ for header in `find $$dir -name "*.h" -o -name "*.inl"` ; do \
+ target=`echo $$header | sed "s?^$${dir}/??"`; \
+ mkdir -p `dirname debian/$(devpkg)/usr/include/$$target`; \
+ cp -a $$header debian/$(devpkg)/usr/include/$$target ; \
+ done ; \
+ done
+
+ # rename runSofa
+ mkdir -p $(CURDIR)/debian/$(apppkg)/usr/lib/sofa-framework
+ mv $(CURDIR)/bin/runSofa $(CURDIR)/debian/$(apppkg)/usr/lib/sofa-framework/sofa
Property changes on: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,26 @@
+#!/bin/sh
+#
+# SOFA wrapper script
+#
+# Copyright (C) 2008 Dominique Belhachemi (domibel at debian.org)
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+export SOFA_DATA_PATH=/usr/share/sofa/share:/usr/share/sofa/examples
+
+/usr/lib/sofa-framework/sofa $*
+
+exit 0
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-apps.install
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-apps.install (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-apps.install 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,3 @@
+debian/sofa.desktop usr/share/applications
+debian/sofa.xpm usr/share/pixmaps
+debian/sofa usr/bin
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-apps.manpages
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-apps.manpages (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-apps.manpages 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1 @@
+debian/*.1
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-data.install
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-data.install (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-data.install 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,2 @@
+share usr/share/sofa
+examples usr/share/sofa
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-doc.doc-base
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-doc.doc-base (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-doc.doc-base 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,14 @@
+Document: sofa-doc
+Title: SOFA class documentation
+Author: Various
+Abstract: GUI for the Simulation Open Framework Architecture (SOFA)
+ SOFA is an Open Source framework primarily targeted at
+ real-time simulation, with an emphasis on medical simulation.
+ It is mostly intended for the research community to help
+ develop newer algorithms, but can also be used as an efficient
+ prototyping tool.
+Section: Programming
+
+Format: HTML
+Index: /usr/share/doc/sofa-doc/html/index.html
+Files: /usr/share/doc/sofa-doc/html/*.html
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-doc.install
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-doc.install (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-doc.install 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1 @@
+debian/index.html usr/share/doc/sofa-doc/html
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-tutorials.install
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-tutorials.install (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa-tutorials.install 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1 @@
+tutorials usr/share/sofa
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.1
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.1 (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.1 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,38 @@
+.TH "sofa" "1" "August 2008" "" ""
+.SH "NAME"
+sofa \- SOFA GUI
+.SH "SYNOPSIS"
+sofa [OPTIONS]
+.SH "DESCRIPTION"
+SOFA is an Open Source framework primarily targeted at real\-time simulation, with an emphasis
+on medical simulation. It is mostly intended for the research community to help develop newer
+algorithms, but can also be used as an efficient prototyping tool. Based on an advanced software
+architecture, it allows one to:
+
+ * create complex and evolving simulations by combining new algorithms with algorithms
+ already included in SOFA
+ * modify most parameters of the simulation – deformable behavior, surface representation,
+ solver, constraints, collision algorithm, etc. – by simply editing an XML file
+ * build complex models from simpler ones using a scene\-graph description
+ * efficiently simulate the dynamics of interacting objects using abstract equation solvers
+ * reuse and easily compare a variety of available methods
+
+.SH "OPTIONS"
+.IP "\-h \-\-help"
+this help
+.IP "\-s \-\-start"
+start the animation loop (default: 0 )
+.IP "\-p \-\-factory"
+In addition to the baz segments, also parse the
+blurfl headers.
+.IP "\-g \-\-gui"
+choose the UI (batch|qt|glut) (default: qt )
+.IP "\-l \-\-load"
+load given plugins (default: )
+.SH "AUTHORS"
+SOFA is currently developed by 3 INRIA teams: Alcove, Evasion and Asclepios but the project also
+benefited from the help of the CIMIT Sim Group, ETH Zurich and CSIRO.
+.SH "SEE ALSO"
+The full documentation for
+.B sofa
+is available at <\fBhttp://www.sofa\-framework.org\fR>
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.desktop
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.desktop (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.desktop 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,9 @@
+[Desktop Entry]
+GenericName=SOFA
+Name=SOFA
+Comment=Open Source Framework for Medical Simulation
+Exec=sofa
+Icon=sofa
+Terminal=false
+Type=Application
+Categories=Education;Science;
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.menu
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.menu (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.menu 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,2 @@
+?package(sofa):needs="X11" section="Applications/Science/Medicine"\
+ title="SOFA" command="/usr/bin/sofa" icon="/usr/share/pixmaps/sofa.xpm"
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.xpm
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.xpm (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/sofa.xpm 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,336 @@
+/* XPM */
+static char * soffaaaa_xpm[] = {
+"32 32 301 2",
+" c None",
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+"+ c #363746",
+"@ c #373846",
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+". . . . . . . m - ; ; ; n . . . o p . . . . q } ; - r s . . . . ",
+". . . . . . . t = d ; ; u . . . v w . . . . x y z A B C . . . . ",
+". . D E . . . @ F 7 ; G H . . . I D . . . J K L M N @ . . . . . ",
+". & [ O P Q . . . R S T U . . V I / . . . W X . . . . . . . . . ",
+"@ Y d d ; Z . . . . . C ` ...+. at .#.$.%.&.*.@ . . . . =.-.;.@ . ",
+"+ >.d ,.,.'.+ . . . . . ).!.~.{.].^./.(._.:.. . . . <.[.}.|.1.@ ",
+". 2.- d ; 3.4.5.@ . . 6.7.8.9.0.0.a.b.c.d.e.. . . f.g.h.i.7 j.] ",
+". k.l.m.n.o.p.q.r.s.p t.u.a.0.v.v.w.a.x.y.z.o.. A.B.C.D.h.E.h.F.",
+". . @ G.@ . . . . H.I.J.x.0.v.v.v.v.v.w.b.K.L.M.N.O.P.h.Q.R.S.T.",
+". . . . . . . . . . U.u.V.0.W.X.X.v.v.w.b.8.Y.Z.J . `. +.+++ at +. ",
+". . . . . @ #+A.. . 1.u.x.v.W.$+$+X.v.v.x.b.%+@ . . . &+*+=+. . ",
+". . . . . -+;+>+,+. '+u.x.v.W.v.X.X.v.0.w.b.)+@ . . . . . . . . ",
+". . . . !+~+{+]+^+/+(+_+:+0.v.v.v.v.v.w.w.u.<+[+@ }+|+1+2+. . . ",
+". . . . 3+4+5+6+7+8+9+0+a+b+c+d+e+f+f+g+h+i+j+k+l+m+n+o+p+q+. . ",
+". . . . r+s+t+u+v+Q . w+x+y+z+E.A+B+C+D+E+F+G+H+I+n+J+J+K+L+. . ",
+". . . . @ M+N+O+P+. . @ Q+i+R+4+S+T+v+U+V+W+. . X+Y+Z+`+`+ @. . ",
+". . . . . . . at +@. . . . @ @@#@$@%@&@*@=@- at . . . ;@>@,@'@)@!@. . ",
+". . . . . . . . . . . . . . @ ~@{@]@^@A.. . . . . /@(@_@:@. . . ",
+". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ",
+". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ",
+". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ",
+". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ",
+". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "};
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/source/format
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/source/format (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/source/format 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/sofa-framework/tags/1.0~beta4-7.1/watch
===================================================================
--- trunk/packages/sofa-framework/tags/1.0~beta4-7.1/watch (rev 0)
+++ trunk/packages/sofa-framework/tags/1.0~beta4-7.1/watch 2013-05-20 19:19:40 UTC (rev 13682)
@@ -0,0 +1,5 @@
+version=3
+opts="dversionmangle=s/~/-/" \
+http://www.sofa-framework.org/download \
+https*://gforge.inria.fr/frs/download.php/.*/sofa-framework-(.*)\.zip \
+ debian debian/get-orig-source
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