[med-svn] r13701 - trunk/packages/hhsuite/trunk/debian/patches
Laszlo Kajan
lkajan at alioth.debian.org
Thu May 23 09:38:56 UTC 2013
Author: lkajan
Date: 2013-05-23 09:38:56 +0000 (Thu, 23 May 2013)
New Revision: 13701
Added:
trunk/packages/hhsuite/trunk/debian/patches/perl_interpreter
trunk/packages/hhsuite/trunk/debian/patches/perlscript_uselib
Modified:
trunk/packages/hhsuite/trunk/debian/patches/Makefile
trunk/packages/hhsuite/trunk/debian/patches/hardening
trunk/packages/hhsuite/trunk/debian/patches/help
trunk/packages/hhsuite/trunk/debian/patches/paths
trunk/packages/hhsuite/trunk/debian/patches/rest1
trunk/packages/hhsuite/trunk/debian/patches/series
Log:
upstream 2.0.16-1 builds correctly, but package is yet untested
Modified: trunk/packages/hhsuite/trunk/debian/patches/Makefile
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/Makefile 2013-05-23 07:12:23 UTC (rev 13700)
+++ trunk/packages/hhsuite/trunk/debian/patches/Makefile 2013-05-23 09:38:56 UTC (rev 13701)
@@ -27,7 +27,7 @@
+INSTALL_BDATA_DIR?=$(INSTALL_LIB_DIR)/data
INSTALL_LIB_BIN_DIR?=$(INSTALL_LIB_DIR)/bin
- dist_name=hhsuite-2.0.15
+ dist_name=hhsuite-2.0.16
-.PHONY: all_static
-all_static: ffindex_static
Modified: trunk/packages/hhsuite/trunk/debian/patches/hardening
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/hardening 2013-05-23 07:12:23 UTC (rev 13700)
+++ trunk/packages/hhsuite/trunk/debian/patches/hardening 2013-05-23 09:38:56 UTC (rev 13701)
@@ -2,19 +2,12 @@
Author: Laszlo Kajan <lkajan at rostlab.org>
--- a/src/Makefile
+++ b/src/Makefile
-@@ -14,13 +14,13 @@
-
- ifdef ICC
- CXX = env LANG=C icc
-- CXXFLAGS = -fast -Wall -fno-strict-aliasing -finline-functions -funroll-loops -fp-model fast=2 -fast-transcendentals -wd981 -wd383 -wd2259 -wd1572 -D HH_SSE3 -I$(CS_DIR)
-+ CXXFLAGS += -fast -Wall -fno-strict-aliasing -finline-functions -funroll-loops -fp-model fast=2 -fast-transcendentals -wd981 -wd383 -wd2259 -wd1572 -D HH_SSE3 -I$(CS_DIR)
- HHSEARCH_LIBS = -lpthread -lrt
- HHBLITS_LIBS = -lpthread -lrt -openmp
+@@ -20,7 +20,7 @@
OBJECT_LIBS = -openmp
else # ifndef ICC
CXX = g++
-- CXXFLAGS = -O3 -Wall -Wno-deprecated -Wno-char-subscripts -fno-strict-aliasing -I$(CS_DIR) $(BITS_FLAG)
-+ CXXFLAGS += -O3 -Wall -Wno-deprecated -Wno-char-subscripts -fno-strict-aliasing -I$(CS_DIR) $(BITS_FLAG)
+- CXXFLAGS = -O3 -Wall -Wno-deprecated -Wno-char-subscripts -fno-strict-aliasing -I$(CS_DIR) $(BITS_FLAG) -fopenmp
++ CXXFLAGS += -O3 -Wall -Wno-deprecated -Wno-char-subscripts -fno-strict-aliasing -I$(CS_DIR) $(BITS_FLAG) -fopenmp
HHSEARCH_LIBS = -lpthread
HHBLITS_LIBS = -lpthread -fopenmp
HHALIGN_LIBS =
Modified: trunk/packages/hhsuite/trunk/debian/patches/help
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/help 2013-05-23 07:12:23 UTC (rev 13700)
+++ trunk/packages/hhsuite/trunk/debian/patches/help 2013-05-23 09:38:56 UTC (rev 13701)
@@ -4,7 +4,7 @@
Author: Laszlo Kajan <lkajan at rostlab.org>
--- a/src/hhblits.C
+++ b/src/hhblits.C
-@@ -382,8 +382,8 @@
+@@ -381,8 +381,8 @@
printf("\n");
printf("Context-specific pseudo-counts: \n");
printf(" -nocontxt use substitution-matrix instead of context-specific pseudocounts \n");
@@ -15,7 +15,7 @@
printf("\n");
printf("Predict secondary structure\n");
printf(" -addss add 2ndary structure predicted with PSIPRED to result MSA \n");
-@@ -412,7 +412,12 @@
+@@ -411,7 +411,12 @@
printf("An extended list of options can be obtained by calling 'hhblits -help'\n");
}
printf("\n");
@@ -25,13 +25,13 @@
+ printf("\n");
+ printf("%s -i query.fas -o query.hhr -oa3m query.a3m -n 1 -d <database-basepath>\n",program_name);
+ printf("\n");
-+ printf("Download databases from ftp://toolkit.genzentrum.lmu.de/HH-suite/databases/ .\n");
++ printf("Download databases from <ftp://toolkit.genzentrum.lmu.de/pub/HH-suite/databases/>.\n");
cout<<endl;
}
--- a/src/hhsearch.C
+++ b/src/hhsearch.C
-@@ -41,6 +41,7 @@
+@@ -48,6 +48,7 @@
#include <float.h> // FLT_MIN
#include <ctype.h> // islower, isdigit etc
#include <time.h> // clock_gettime etc. (in realtime library (-lrt compiler option))
@@ -39,7 +39,7 @@
#include <errno.h> // perror()
#include <cassert>
#include <stdexcept>
-@@ -300,8 +301,8 @@
+@@ -308,8 +309,8 @@
printf("\n");
printf("Context-specific pseudo-counts: \n");
printf(" -nocontxt use substitution-matrix instead of context-specific pseudocounts \n");
Modified: trunk/packages/hhsuite/trunk/debian/patches/paths
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/paths 2013-05-23 07:12:23 UTC (rev 13700)
+++ trunk/packages/hhsuite/trunk/debian/patches/paths 2013-05-23 09:38:56 UTC (rev 13701)
@@ -4,16 +4,15 @@
Author: Laszlo Kajan <lkajan at rostlab.org>
--- a/scripts/HHPaths.pm
+++ b/scripts/HHPaths.pm
-@@ -30,7 +30,7 @@
- use Exporter;
- our $VERSION = "version 2.0.15 (June 2012)";
+@@ -31,6 +31,7 @@
+ our $VERSION = "version 2.0.16 (January 2013)";
our @ISA = qw(Exporter);
--our @EXPORT = qw($VERSION $hhlib $hhdata $hhbin $hhscripts $execdir $datadir $ncbidir $dummydb $pdbdir $dsspdir $dssp $cs_lib $context_lib);
-+our @EXPORT = qw($VERSION $hhlib $hhshare $hhdata $hhbdata $hhbin $hhscripts $execdir $datadir $ncbidir $dummydb $pdbdir $dsspdir $dssp $cs_lib $context_lib);
+ our @EXPORT = qw($VERSION $hhlib $hhdata $hhbin $hhscripts $execdir $datadir $ncbidir $dummydb $pdbdir $dsspdir $dssp $cs_lib $context_lib $v);
++push @EXPORT, qw($hhshare $hhbdata);
##############################################################################################
# PLEASE COMPLETE THE PATHS ... TO PSIPRED AND OLD-STYLE BLAST (NOT BLAST+) (NEEDED FOR PSIPRED)
-@@ -54,11 +54,13 @@
+@@ -54,11 +55,13 @@
# The lines below probably do not need to be changed
# Setting paths for hh-suite perl scripts
Added: trunk/packages/hhsuite/trunk/debian/patches/perl_interpreter
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/perl_interpreter (rev 0)
+++ trunk/packages/hhsuite/trunk/debian/patches/perl_interpreter 2013-05-23 09:38:56 UTC (rev 13701)
@@ -0,0 +1,91 @@
+Description: patch Perl interpreter as required by Polich 5.1
+ Perl Script Magic - http://www.debian.org/doc/packaging-manuals/perl-policy/ch-programs.html#s-hash_bang
+Author: Laszlo Kajan <lkajan at rostlab.org>
+--- a/scripts/addss.pl
++++ b/scripts/addss.pl
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env perl
++#!/usr/bin/perl
+ #
+ # addss.pl
+ # Add PSIPRED secondary structure prediction (and DSSP annotation) to an MSA or HMMER file.
+--- a/scripts/create_profile_from_hhm.pl
++++ b/scripts/create_profile_from_hhm.pl
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env perl
++#!/usr/bin/perl
+ #
+ # create_profile_from_hhm.pl
+ # Create a profile (.prf) from a given HHM file
+--- a/scripts/create_profile_from_hmmer.pl
++++ b/scripts/create_profile_from_hmmer.pl
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env perl
++#!/usr/bin/perl
+ #
+ # create_profile_from_hmmer.pl
+ # Create a profile (.prf) from a given HMMER/HMMER3 file
+--- a/scripts/hhblitsdb.pl
++++ b/scripts/hhblitsdb.pl
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env perl
++#!/usr/bin/perl
+ #
+ # hhblits.pl
+ # Creates HH-suite database files from A3M and HHM/HMMER-formatted files
+--- a/scripts/hhmakemodel.pl
++++ b/scripts/hhmakemodel.pl
+@@ -1,4 +1,4 @@
+-#! /usr/bin/env perl
++#!/usr/bin/perl
+ #
+ # hhmakemodel.pl
+ # Generate a model from an output alignment of hhsearch.
+--- a/scripts/multithread.pl
++++ b/scripts/multithread.pl
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env perl
++#!/usr/bin/perl
+ #
+ # multithread.pl:
+ # Run a command with different file names as arguments on multiple threads in parallel
+--- a/scripts/pdb2fasta.pl
++++ b/scripts/pdb2fasta.pl
+@@ -1,4 +1,4 @@
+-#! /usr/bin/env perl
++#!/usr/bin/perl
+ #
+ # pdb2fasta.pl - generate FASTA nonredundant sequence file from SEQRES records of globbed pdb files.
+
+--- a/scripts/pdbfilter.pl
++++ b/scripts/pdbfilter.pl
+@@ -1,4 +1,4 @@
+-#! /usr/bin/env perl
++#!/usr/bin/perl
+ # pdbfilter.pl - Read pdb or SCOP sequences from infile and write representative set of sequences to outfile
+
+ #
+--- a/scripts/reformat.pl
++++ b/scripts/reformat.pl
+@@ -1,4 +1,4 @@
+-#! /usr/bin/env perl
++#!/usr/bin/perl
+
+ # reformat.pl
+ # Reformat a multiple alignment file
+--- a/scripts/renumberpdb.pl
++++ b/scripts/renumberpdb.pl
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env perl
++#!/usr/bin/perl
+ # renumberpdb.pl - generate a PDB file with renumbered indices that match residue indices in input sequence
+ # Usage: renumberpdb.pl [options] infile [outfile]
+ # Example: renumberpdb.pl d1hz4a_.a3m d1hz4a_.pdb
+--- a/scripts/splitfasta.pl
++++ b/scripts/splitfasta.pl
+@@ -1,4 +1,4 @@
+-#! /usr/bin/env perl
++#!/usr/bin/perl
+ # splitfasta.pl
+ # Split a file with multiple, FASTA formatted sequences into many single-sequence FASTA files
+ #
Added: trunk/packages/hhsuite/trunk/debian/patches/perlscript_uselib
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/perlscript_uselib (rev 0)
+++ trunk/packages/hhsuite/trunk/debian/patches/perlscript_uselib 2013-05-23 09:38:56 UTC (rev 13701)
@@ -0,0 +1,124 @@
+Description: Perl script use lib
+ * Set paths to hhsuite components for Perl scripts.
+Author: Laszlo Kajan <lkajan at rostlab.org>
+--- a/scripts/addss.pl
++++ b/scripts/addss.pl
+@@ -29,7 +29,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use Align; # Needleman-Wunsch and Smith-Waterman alignment functions
+ use File::Temp qw/ tempfile tempdir /;
+--- a/scripts/hhblitsdb.pl
++++ b/scripts/hhblitsdb.pl
+@@ -28,7 +28,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use strict;
+ #use File::Glob 'bsd_glob'; # splits patterns delimited by spaces into multiple patterns and applies them using OR
+--- a/scripts/hhmakemodel.pl
++++ b/scripts/hhmakemodel.pl
+@@ -28,7 +28,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use strict;
+ use Align;
+--- a/scripts/create_profile_from_hhm.pl
++++ b/scripts/create_profile_from_hhm.pl
+@@ -27,7 +27,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use strict;
+
+--- a/scripts/create_profile_from_hmmer.pl
++++ b/scripts/create_profile_from_hmmer.pl
+@@ -27,7 +27,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use strict;
+
+--- a/scripts/multithread.pl
++++ b/scripts/multithread.pl
+@@ -29,7 +29,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use strict;
+ use POSIX;
+--- a/scripts/reformat.pl
++++ b/scripts/reformat.pl
+@@ -27,7 +27,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use strict;
+ use warnings;
+--- a/scripts/pdb2fasta.pl
++++ b/scripts/pdb2fasta.pl
+@@ -26,7 +26,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use strict;
+ $|= 1; # Activate autoflushing on STDOUT
+--- a/scripts/pdbfilter.pl
++++ b/scripts/pdbfilter.pl
+@@ -26,7 +26,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use strict;
+
+--- a/scripts/renumberpdb.pl
++++ b/scripts/renumberpdb.pl
+@@ -27,7 +27,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use Align; # Needleman-Wunsch and Smith-Waterman alignment functions
+ use strict;
+--- a/scripts/splitfasta.pl
++++ b/scripts/splitfasta.pl
+@@ -26,7 +26,7 @@
+
+ # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
+
+-use lib $ENV{"HHLIB"}."/scripts";
++use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
+ use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
+ use strict;
+ use warnings;
Modified: trunk/packages/hhsuite/trunk/debian/patches/rest1
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/rest1 2013-05-23 07:12:23 UTC (rev 13700)
+++ trunk/packages/hhsuite/trunk/debian/patches/rest1 2013-05-23 09:38:56 UTC (rev 13701)
@@ -1,5 +1,4 @@
Description: Assorted patches
- * Set paths to hhsuite components for Perl scripts.
* Add a Makefile to generate data/do_not_delete.phr,do_not_delete.pin,do_not_delete.psq .
Author: Laszlo Kajan <lkajan at rostlab.org>
--- a/src/Makefile
@@ -15,8 +14,8 @@
OBJECT_LIBS = -openmp
else # ifndef ICC
CXX = g++
-- CXXFLAGS = -O3 -Wall -Wno-deprecated -Wno-char-subscripts -fno-strict-aliasing -I$(CS_DIR) $(BITS_FLAG) -I$(FFINDEX_DIR)
-+ CXXFLAGS = -O3 -Wall -Wno-deprecated -Wno-char-subscripts -fno-strict-aliasing -I$(CS_DIR) $(BITS_FLAG)
+- CXXFLAGS = -O3 -Wall -Wno-deprecated -Wno-char-subscripts -fno-strict-aliasing -I$(CS_DIR) $(BITS_FLAG) -I$(FFINDEX_DIR) -fopenmp
++ CXXFLAGS = -O3 -Wall -Wno-deprecated -Wno-char-subscripts -fno-strict-aliasing -I$(CS_DIR) $(BITS_FLAG) -fopenmp
HHSEARCH_LIBS = -lpthread
HHBLITS_LIBS = -lpthread -fopenmp
HHALIGN_LIBS =
@@ -29,39 +28,6 @@
hhblits_static: hhblits.C $(SOURCES) $(HEADERS)$(CS_OBJECTS)
$(CPP) -static hhblits.C -o hhblits $(CS_OBJECTS) $(HHBLITS_LIBS) $(FFINDEX_DIR)/libffindex.a
---- a/scripts/addss.pl
-+++ b/scripts/addss.pl
-@@ -28,7 +28,7 @@
-
- # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
-
--use lib $ENV{"HHLIB"}."/scripts";
-+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
- use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
- use Align; # Needleman-Wunsch and Smith-Waterman alignment functions
- use File::Temp qw/ tempfile tempdir /;
---- a/scripts/hhblitsdb.pl
-+++ b/scripts/hhblitsdb.pl
-@@ -28,7 +28,7 @@
-
- # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
-
--use lib $ENV{"HHLIB"}."/scripts";
-+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
- use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
- use strict;
-
---- a/scripts/hhmakemodel.pl
-+++ b/scripts/hhmakemodel.pl
-@@ -28,7 +28,7 @@
-
- # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
-
--use lib $ENV{"HHLIB"}."/scripts";
-+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
- use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
- use strict;
- use Align;
--- /dev/null
+++ b/data/Makefile
@@ -0,0 +1,11 @@
@@ -76,47 +42,3 @@
+
+clean:
+ rm -f $(DUMMYDB) formatdb.log
---- a/scripts/create_profile_from_hhm.pl
-+++ b/scripts/create_profile_from_hhm.pl
-@@ -27,7 +27,7 @@
-
- # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
-
--use lib $ENV{"HHLIB"}."/scripts";
-+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
- use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
- use strict;
-
---- a/scripts/create_profile_from_hmmer.pl
-+++ b/scripts/create_profile_from_hmmer.pl
-@@ -27,7 +27,7 @@
-
- # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
-
--use lib $ENV{"HHLIB"}."/scripts";
-+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
- use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
- use strict;
-
---- a/scripts/multithread.pl
-+++ b/scripts/multithread.pl
-@@ -29,7 +29,7 @@
-
- # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
-
--use lib $ENV{"HHLIB"}."/scripts";
-+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
- use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
- use strict;
- use POSIX;
---- a/scripts/reformat.pl
-+++ b/scripts/reformat.pl
-@@ -27,7 +27,7 @@
-
- # We are very grateful for bug reports! Please contact us at soeding at genzentrum.lmu.de
-
--use lib $ENV{"HHLIB"}."/scripts";
-+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
- use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
- use strict;
- use warnings;
Modified: trunk/packages/hhsuite/trunk/debian/patches/series
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/series 2013-05-23 07:12:23 UTC (rev 13700)
+++ trunk/packages/hhsuite/trunk/debian/patches/series 2013-05-23 09:38:56 UTC (rev 13701)
@@ -2,6 +2,8 @@
paths
help
rest1
+perlscript_uselib
hardening
unused_variables_warning
unnecessary_libz
+perl_interpreter
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