[med-svn] r13741 - trunk/packages/staden-io-lib/trunk/debian
Charles Plessy
plessy at alioth.debian.org
Wed May 29 10:18:01 UTC 2013
Author: plessy
Date: 2013-05-29 10:18:01 +0000 (Wed, 29 May 2013)
New Revision: 13741
Modified:
trunk/packages/staden-io-lib/trunk/debian/changelog
trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols
Log:
New symbols for libstaden-read1.symbols.
Modified: trunk/packages/staden-io-lib/trunk/debian/changelog
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/changelog 2013-05-29 09:51:34 UTC (rev 13740)
+++ trunk/packages/staden-io-lib/trunk/debian/changelog 2013-05-29 10:18:01 UTC (rev 13741)
@@ -5,6 +5,7 @@
* Removed obsolete DM-Upload-Allowed field.
* Machine-readable Debian copyright file.
* Normalised debian/control with config-model-edit.
+ * New symbols for libstaden-read1.
-- Charles Plessy <plessy at debian.org> Wed, 29 May 2013 18:25:50 +0900
Modified: trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols 2013-05-29 09:51:34 UTC (rev 13740)
+++ trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols 2013-05-29 10:18:01 UTC (rev 13741)
@@ -31,8 +31,31 @@
HashTableSearch at Base 1.12.4
HashTableStats at Base 1.12.4
HashTcl at Base 1.12.4
+ MD5_Final at Base 1.13.1
+ MD5_Init at Base 1.13.1
+ MD5_Update at Base 1.13.1
abi_reset_data_counts at Base 1.12.4
abi_set_data_counts at Base 1.12.4
+ bam_aux_A at Base 1.13.1
+ bam_aux_Z at Base 1.13.1
+ bam_aux_add at Base 1.13.1
+ bam_aux_add_data at Base 1.13.1
+ bam_aux_add_from_sam at Base 1.13.1
+ bam_aux_add_vec at Base 1.13.1
+ bam_aux_d at Base 1.13.1
+ bam_aux_f at Base 1.13.1
+ bam_aux_find at Base 1.13.1
+ bam_aux_i at Base 1.13.1
+ bam_aux_iter at Base 1.13.1
+ bam_aux_size_vec at Base 1.13.1
+ bam_close at Base 1.13.1
+ bam_construct_seq at Base 1.13.1
+ bam_get_line at Base 1.13.1
+ bam_get_seq at Base 1.13.1
+ bam_next_seq at Base 1.13.1
+ bam_open at Base 1.13.1
+ bam_put_seq at Base 1.13.1
+ bam_write_header at Base 1.13.1
be_read_int_1 at Base 1.12.4
be_read_int_2 at Base 1.12.4
be_read_int_4 at Base 1.12.4
@@ -57,6 +80,114 @@
compressed_file_exists at Base 1.12.4
conf2str at Base 1.12.4
construct_trace_name at Base 1.12.4
+ cram_beta_decode at Base 1.13.1
+ cram_beta_decode_free at Base 1.13.1
+ cram_beta_decode_init at Base 1.13.1
+ cram_beta_encode_char at Base 1.13.1
+ cram_beta_encode_free at Base 1.13.1
+ cram_beta_encode_init at Base 1.13.1
+ cram_beta_encode_int at Base 1.13.1
+ cram_beta_encode_store at Base 1.13.1
+ cram_block_method2str at Base 1.13.1
+ cram_byte_array_len_decode at Base 1.13.1
+ cram_byte_array_len_decode_free at Base 1.13.1
+ cram_byte_array_len_decode_init at Base 1.13.1
+ cram_byte_array_len_encode at Base 1.13.1
+ cram_byte_array_len_encode_free at Base 1.13.1
+ cram_byte_array_len_encode_init at Base 1.13.1
+ cram_byte_array_len_encode_store at Base 1.13.1
+ cram_byte_array_stop_decode_block at Base 1.13.1
+ cram_byte_array_stop_decode_char at Base 1.13.1
+ cram_byte_array_stop_decode_free at Base 1.13.1
+ cram_byte_array_stop_decode_init at Base 1.13.1
+ cram_byte_array_stop_encode at Base 1.13.1
+ cram_byte_array_stop_encode_free at Base 1.13.1
+ cram_byte_array_stop_encode_init at Base 1.13.1
+ cram_byte_array_stop_encode_store at Base 1.13.1
+ cram_close at Base 1.13.1
+ cram_compress_block at Base 1.13.1
+ cram_content_type2str at Base 1.13.1
+ cram_decode_TD at Base 1.13.1
+ cram_decode_compression_header at Base 1.13.1
+ cram_decode_slice at Base 1.13.1
+ cram_decode_slice_header at Base 1.13.1
+ cram_decoder_init at Base 1.13.1
+ cram_encode_compression_header at Base 1.13.1
+ cram_encode_container at Base 1.13.1
+ cram_encode_slice_header at Base 1.13.1
+ cram_encoder_init at Base 1.13.1
+ cram_encoding2str at Base 1.13.1
+ cram_eof at Base 1.13.1
+ cram_external_decode_block at Base 1.13.1
+ cram_external_decode_char at Base 1.13.1
+ cram_external_decode_free at Base 1.13.1
+ cram_external_decode_init at Base 1.13.1
+ cram_external_decode_int at Base 1.13.1
+ cram_external_encode at Base 1.13.1
+ cram_external_encode_free at Base 1.13.1
+ cram_external_encode_init at Base 1.13.1
+ cram_external_encode_store at Base 1.13.1
+ cram_flush at Base 1.13.1
+ cram_flush_container at Base 1.13.1
+ cram_free_block at Base 1.13.1
+ cram_free_compression_header at Base 1.13.1
+ cram_free_container at Base 1.13.1
+ cram_free_file_def at Base 1.13.1
+ cram_free_slice at Base 1.13.1
+ cram_free_slice_header at Base 1.13.1
+ cram_gamma_decode at Base 1.13.1
+ cram_gamma_decode_free at Base 1.13.1
+ cram_gamma_decode_init at Base 1.13.1
+ cram_get_bam_seq at Base 1.13.1
+ cram_get_ref at Base 1.13.1
+ cram_get_seq at Base 1.13.1
+ cram_huffman_decode_char0 at Base 1.13.1
+ cram_huffman_decode_char at Base 1.13.1
+ cram_huffman_decode_free at Base 1.13.1
+ cram_huffman_decode_init at Base 1.13.1
+ cram_huffman_decode_int0 at Base 1.13.1
+ cram_huffman_decode_int at Base 1.13.1
+ cram_huffman_encode_char0 at Base 1.13.1
+ cram_huffman_encode_char at Base 1.13.1
+ cram_huffman_encode_free at Base 1.13.1
+ cram_huffman_encode_init at Base 1.13.1
+ cram_huffman_encode_int0 at Base 1.13.1
+ cram_huffman_encode_int at Base 1.13.1
+ cram_huffman_encode_store at Base 1.13.1
+ cram_index_free at Base 1.13.1
+ cram_index_load at Base 1.13.1
+ cram_index_query at Base 1.13.1
+ cram_load_reference at Base 1.13.1
+ cram_new_block at Base 1.13.1
+ cram_new_compression_header at Base 1.13.1
+ cram_new_container at Base 1.13.1
+ cram_new_metrics at Base 1.13.1
+ cram_new_slice at Base 1.13.1
+ cram_open at Base 1.13.1
+ cram_put_bam_seq at Base 1.13.1
+ cram_read_SAM_hdr at Base 1.13.1
+ cram_read_block at Base 1.13.1
+ cram_read_container at Base 1.13.1
+ cram_read_file_def at Base 1.13.1
+ cram_read_slice at Base 1.13.1
+ cram_seek at Base 1.13.1
+ cram_seek_to_refpos at Base 1.13.1
+ cram_set_option at Base 1.13.1
+ cram_set_voption at Base 1.13.1
+ cram_stats_add at Base 1.13.1
+ cram_stats_create at Base 1.13.1
+ cram_stats_del at Base 1.13.1
+ cram_stats_dump at Base 1.13.1
+ cram_stats_encoding at Base 1.13.1
+ cram_stats_free at Base 1.13.1
+ cram_subexp_decode at Base 1.13.1
+ cram_subexp_decode_free at Base 1.13.1
+ cram_subexp_decode_init at Base 1.13.1
+ cram_uncompress_block at Base 1.13.1
+ cram_write_SAM_hdr at Base 1.13.1
+ cram_write_block at Base 1.13.1
+ cram_write_container at Base 1.13.1
+ cram_write_file_def at Base 1.13.1
ctfFRead at Base 1.12.4
ctfFWrite at Base 1.12.4
decode_sff_common_header at Base 1.12.4
@@ -68,6 +199,38 @@
decorrelate4 at Base 1.12.4
delete_ztr at Base 1.12.4
determine_trace_type at Base 1.12.4
+ dstring_append at Base 1.13.1
+ dstring_append_char at Base 1.13.1
+ dstring_append_hex_encoded at Base 1.13.1
+ dstring_append_int at Base 1.13.1
+ dstring_appendf at Base 1.13.1
+ dstring_create at Base 1.13.1
+ dstring_create_with at Base 1.13.1
+ dstring_delete at Base 1.13.1
+ dstring_destroy at Base 1.13.1
+ dstring_dinsert at Base 1.13.1
+ dstring_dreplace at Base 1.13.1
+ dstring_empty at Base 1.13.1
+ dstring_escape_html at Base 1.13.1
+ dstring_find at Base 1.13.1
+ dstring_find_replace at Base 1.13.1
+ dstring_find_replace_all at Base 1.13.1
+ dstring_htmlise_links at Base 1.13.1
+ dstring_insert at Base 1.13.1
+ dstring_insertf at Base 1.13.1
+ dstring_length at Base 1.13.1
+ dstring_nappend at Base 1.13.1
+ dstring_ninsert at Base 1.13.1
+ dstring_nprepend at Base 1.13.1
+ dstring_perror at Base 1.13.1
+ dstring_prepend at Base 1.13.1
+ dstring_prependf at Base 1.13.1
+ dstring_refresh_length at Base 1.13.1
+ dstring_replace at Base 1.13.1
+ dstring_resize at Base 1.13.1
+ dstring_str at Base 1.13.1
+ dstring_to_html at Base 1.13.1
+ dstring_vinsertf at Base 1.13.1
dump_labels at Base 1.12.4
eflt_feature_ids at Base 1.12.4
encode_sff_common_header at Base 1.12.4
@@ -97,6 +260,7 @@
exp_set_entry at Base 1.12.4
expand_8to16 at Base 1.12.4
expand_8to32 at Base 1.12.4
+ expand_cache_path at Base 1.13.1
expcr_ at Base 1.12.4
exper_ at Base 1.12.4
expkil_ at Base 1.12.4
@@ -114,6 +278,7 @@
fdetermine_trace_type at Base 1.12.4
file_exists at Base 1.12.4
file_size at Base 1.12.4
+ find_file_url at Base 1.13.1
flen at Base 1.12.4
follow1 at Base 1.12.4
fopen_compressed at Base 1.12.4
@@ -156,6 +321,10 @@
ichebcomp at Base 1.12.4
ichebuncomp at Base 1.12.4
init_decode_tables at Base 1.12.4
+ int32_decode at Base 1.13.1
+ int32_encode at Base 1.13.1
+ int32_get at Base 1.13.1
+ int32_put at Base 1.13.1
int_to_float at Base 1.12.4
iolib_get_exp_path at Base 1.12.4
iolib_get_trace_path at Base 1.12.4
@@ -164,6 +333,9 @@
is_directory at Base 1.12.4
is_file at Base 1.12.4
is_scf at Base 1.12.4
+ itf8_decode at Base 1.13.1
+ itf8_encode at Base 1.13.1
+ itf8_put_blk at Base 1.13.1
le_read_int_1 at Base 1.12.4
le_read_int_2 at Base 1.12.4
le_read_int_4 at Base 1.12.4
@@ -173,6 +345,9 @@
le_write_int_4 at Base 1.12.4
le_write_int_8 at Base 1.12.4
log2_data at Base 1.12.4
+ ltf8_decode at Base 1.13.1
+ ltf8_get at Base 1.13.1
+ ltf8_put at Base 1.13.1
memgunzip at Base 1.12.4
memgzip at Base 1.12.4
mfascii at Base 1.12.4
@@ -209,6 +384,7 @@
mfwrite_reading at Base 1.12.4
mfwrite_scf at Base 1.12.4
mfwrite_ztr at Base 1.12.4
+ mkdir_prefix at Base 1.13.1
mrewind at Base 1.12.4
mstderr at Base 1.12.4
mstdin at Base 1.12.4
@@ -227,6 +403,7 @@
open_trace_mfile at Base 1.12.4
opos2str at Base 1.12.4
pack_trace_suffix at Base 1.12.4
+ paranoid_fclose at Base 1.13.1
partial_decode_ztr at Base 1.12.4
pool_alloc at Base 1.12.4
pool_create at Base 1.12.4
@@ -267,11 +444,32 @@
recorrelate1 at Base 1.12.4
recorrelate2 at Base 1.12.4
recorrelate4 at Base 1.12.4
+ refs2id at Base 1.13.1
remove_extension at Base 1.12.4
remove_file at Base 1.12.4
restore_codes at Base 1.12.4
restore_codes_single at Base 1.12.4
rle at Base 1.12.4
+ sam_hdr_PG_ID at Base 1.13.1
+ sam_hdr_add at Base 1.13.1
+ sam_hdr_add_PG at Base 1.13.1
+ sam_hdr_add_lines at Base 1.13.1
+ sam_hdr_dump at Base 1.13.1
+ sam_hdr_dup at Base 1.13.1
+ sam_hdr_find at Base 1.13.1
+ sam_hdr_find_key at Base 1.13.1
+ sam_hdr_find_line at Base 1.13.1
+ sam_hdr_find_rg at Base 1.13.1
+ sam_hdr_free at Base 1.13.1
+ sam_hdr_length at Base 1.13.1
+ sam_hdr_link_pg at Base 1.13.1
+ sam_hdr_name2ref at Base 1.13.1
+ sam_hdr_new at Base 1.13.1
+ sam_hdr_parse at Base 1.13.1
+ sam_hdr_rebuild at Base 1.13.1
+ sam_hdr_str at Base 1.13.1
+ sam_hdr_update at Base 1.13.1
+ sam_hdr_vadd at Base 1.13.1
scf2read at Base 1.12.4
scf_allocate at Base 1.12.4
scf_deallocate at Base 1.12.4
@@ -279,6 +477,17 @@
scf_delta_samples2 at Base 1.12.4
scf_version_float2str at Base 1.12.4
scf_version_str2float at Base 1.12.4
+ scram_close at Base 1.13.1
+ scram_get_header at Base 1.13.1
+ scram_get_refs at Base 1.13.1
+ scram_get_seq at Base 1.13.1
+ scram_next_seq at Base 1.13.1
+ scram_open at Base 1.13.1
+ scram_put_seq at Base 1.13.1
+ scram_set_header at Base 1.13.1
+ scram_set_option at Base 1.13.1
+ scram_set_refs at Base 1.13.1
+ scram_write_header at Base 1.13.1
set_compression_method at Base 1.12.4
set_scf_version at Base 1.12.4
shrink_16to8 at Base 1.12.4
@@ -330,6 +539,13 @@
str2opos at Base 1.12.4
str_tolower at Base 1.12.4
str_toupper at Base 1.12.4
+ string_alloc at Base 1.13.1
+ string_dup at Base 1.13.1
+ string_ndup at Base 1.13.1
+ string_pool_create at Base 1.13.1
+ string_pool_destroy at Base 1.13.1
+ stringify_argv at Base 1.13.1
+ tokenise_search_path at Base 1.13.1
trace_type_int2str at Base 1.12.4
trace_type_str2int at Base 1.12.4
trace_type_str at Base 1.12.4
@@ -368,6 +584,14 @@
xrealloc at Base 1.12.4
xrle2 at Base 1.12.4
xrle at Base 1.12.4
+ zfclose at Base 1.13.1
+ zfeof at Base 1.13.1
+ zfgets at Base 1.13.1
+ zfopen at Base 1.13.1
+ zfpeek at Base 1.13.1
+ zfputs at Base 1.13.1
+ zfseeko at Base 1.13.1
+ zftello at Base 1.13.1
zlib_dehuff at Base 1.12.4
zlib_huff at Base 1.12.4
ztr2read at Base 1.12.4
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