[med-svn] r13752 - trunk/packages/bowtie/trunk/debian

[Ognyan Kulev]

Author: ogi
Date: 2013-05-29 21:07:24 +0000 (Wed, 29 May 2013)
New Revision: 13752

Modified:
   trunk/packages/bowtie/trunk/debian/changelog
   trunk/packages/bowtie/trunk/debian/control
   trunk/packages/bowtie/trunk/debian/rules
Log:
* Lintian fixes:
  - Removed DM-Upload-Allowed field.
  - Standards Version 3.9.4 (no changes needed).
  - Remove execute bits on some files in bowtie-examples.
* Don't compress *.ebwt index files in bowtie-examples package.
* Package description now starts with a capital letter.


Modified: trunk/packages/bowtie/trunk/debian/changelog
===================================================================
--- trunk/packages/bowtie/trunk/debian/changelog	2013-05-29 21:00:17 UTC (rev 13751)
+++ trunk/packages/bowtie/trunk/debian/changelog	2013-05-29 21:07:24 UTC (rev 13752)
@@ -1,3 +1,14 @@
+bowtie (1.0.0-4) unstable; urgency=low
+
+  * Lintian fixes:
+    - Removed DM-Upload-Allowed field.
+    - Standards Version 3.9.4 (no changes needed).
+    - Remove execute bits on some files in bowtie-examples.
+  * Don't compress *.ebwt index files in bowtie-examples package.
+  * Package description now starts with a capital letter.
+  
+ -- Ognyan Kulev <ogi at debian.org>  Wed, 29 May 2013 22:53:13 +0300
+
 bowtie (1.0.0-3) unstable; urgency=low
 
   * New patch no_hash_style_both_for_mips.patch.

Modified: trunk/packages/bowtie/trunk/debian/control
===================================================================
--- trunk/packages/bowtie/trunk/debian/control	2013-05-29 21:00:17 UTC (rev 13751)
+++ trunk/packages/bowtie/trunk/debian/control	2013-05-29 21:07:24 UTC (rev 13752)
@@ -2,13 +2,12 @@
 Section: science
 Priority: extra
 Maintainer:  Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
 Uploaders: Steffen Moeller <moeller at debian.org>,
  Yask Gupta <yask.gupta87 at gmail.com>,
  Andreas Tille <tille at debian.org>,
  Ognyan Kulev <ogi at debian.org>
 Build-Depends: debhelper (>= 9), help2man, seqan-dev (>= 1.3)
-Standards-Version: 3.9.3
+Standards-Version: 3.9.4
 Homepage: http://bowtie-bio.sourceforge.net/
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/bowtie/trunk
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bowtie/trunk/
@@ -17,7 +16,7 @@
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Suggests: bowtie-examples
-Description: ultrafast memory-efficient short read aligner
+Description: Ultrafast memory-efficient short read aligner
  This package addresses the problem to interpret the results from the
  latest (2010) DNA sequencing technologies. Those will yield fairly
  short stretches and those cannot be interpreted directly. It is the

Modified: trunk/packages/bowtie/trunk/debian/rules
===================================================================
--- trunk/packages/bowtie/trunk/debian/rules	2013-05-29 21:00:17 UTC (rev 13751)
+++ trunk/packages/bowtie/trunk/debian/rules	2013-05-29 21:07:24 UTC (rev 13752)
@@ -24,6 +24,15 @@
 	help2man --name="extracts information from a bowtie index" --no-info \
              $(CURDIR)/bowtie-inspect > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/bowtie-inspect.1
 
+override_dh_compress:
+	dh_compress -X.ebwt
+
+override_dh_fixperms:
+	dh_fixperms
+	chmod 644 debian/bowtie-examples/usr/share/doc/bowtie/examples/indexes/*
+#	Following line is not needed because gzipped genome (by dh_compress) is always 644.
+#	chmod 644 debian/bowtie-examples/usr/share/doc/bowtie/examples/genomes/*
+
 override_dh_auto_clean:
 	rm -f .bowtie*
 	dh_auto_clean