[med-svn] [fastaq] branch master updated (f71532c -> 7466ab2)

[Jorge Soares]

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jssoares-guest pushed a change to branch master
in repository fastaq.

      from  f71532c   removed quasr script description from control file
       new  7f0118a   many changes
       new  7466ab2   now proper manpages.lintian clean

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .pc/.quilt_patches                                 |   1 +
 .pc/.quilt_series                                  |   1 +
 .pc/.version                                       |   1 +
 debian/patches/series => .pc/applied-patches       |   0
 .../.timestamp                                     |   0
 .../scripts}/fastaq_capillary_to_pairs             |   0
 .../scripts}/fastaq_chunker                        |   0
 .../scripts}/fastaq_count_sequences                |   0
 .../scripts}/fastaq_deinterleave                   |   0
 .../scripts}/fastaq_enumerate_names                |   0
 .../scripts}/fastaq_expand_nucleotides             |   0
 .../scripts}/fastaq_extend_gaps                    |   0
 .../scripts}/fastaq_fasta_to_fastq                 |   0
 .../scripts}/fastaq_filter                         |   0
 .../scripts}/fastaq_get_ids                        |   0
 .../scripts}/fastaq_get_seq_flanking_gaps          |   0
 .../scripts}/fastaq_insert_or_delete_bases         |   0
 .../scripts}/fastaq_interleave                     |   0
 .../scripts}/fastaq_long_read_simulate             |   0
 .../scripts}/fastaq_make_random_contigs            |   0
 .../scripts}/fastaq_merge                          |   0
 .../scripts}/fastaq_replace_bases                  |   0
 .../scripts}/fastaq_reverse_complement             |   0
 .../scripts}/fastaq_scaffolds_to_contigs           |   0
 .../scripts}/fastaq_search_for_seq                 |   0
 .../scripts}/fastaq_sequence_trim                  |   0
 .../scripts}/fastaq_split_by_base_count            |   0
 .../scripts}/fastaq_strip_illumina_suffix          |   0
 .../scripts}/fastaq_to_fake_qual                   |   0
 .../scripts}/fastaq_to_fasta                       |   0
 .../scripts}/fastaq_to_mira_xml                    |   0
 .../scripts}/fastaq_to_orfs_gff                    |   0
 .../scripts}/fastaq_to_perfect_reads               |   0
 .../scripts}/fastaq_to_random_subset               |   0
 .../scripts}/fastaq_to_tiling_bam                  |   0
 .../scripts}/fastaq_to_unique_by_id                |   0
 .../scripts}/fastaq_translate                      |   0
 .../scripts}/fastaq_trim_Ns_at_end                 |   0
 .../scripts}/fastaq_trim_ends                      |   0
 debian/changelog                                   |   6 +
 debian/copyright                                   |   2 +-
 ...ay-import-statements-for-manpage-creation.patch | 307 ++++++++++++---------
 debian/usage_to_man                                |  47 +++-
 43 files changed, 227 insertions(+), 138 deletions(-)
 create mode 100644 .pc/.quilt_patches
 create mode 100644 .pc/.quilt_series
 create mode 100644 .pc/.version
 copy debian/patches/series => .pc/applied-patches (100%)
 copy fastaq/tests/data/sequences_test_empty_file => .pc/delay-import-statements-for-manpage-creation.patch/.timestamp (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_capillary_to_pairs (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_chunker (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_count_sequences (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_deinterleave (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_enumerate_names (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_expand_nucleotides (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_extend_gaps (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_fasta_to_fastq (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_filter (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_get_ids (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_get_seq_flanking_gaps (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_insert_or_delete_bases (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_interleave (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_long_read_simulate (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_make_random_contigs (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_merge (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_replace_bases (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_reverse_complement (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_scaffolds_to_contigs (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_search_for_seq (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_sequence_trim (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_split_by_base_count (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_strip_illumina_suffix (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_to_fake_qual (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_to_fasta (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_to_mira_xml (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_to_orfs_gff (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_to_perfect_reads (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_to_random_subset (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_to_tiling_bam (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_to_unique_by_id (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_translate (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_trim_Ns_at_end (100%)
 copy {scripts => .pc/delay-import-statements-for-manpage-creation.patch/scripts}/fastaq_trim_ends (100%)

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