[med-svn] [rtax] 01/01: Upstream author moved to github.com, updated all metadata URLs. Bump standards-Verson to 3.9.6.

Sat Nov 29 21:06:09 UTC 2014

This is an automated email from the git hooks/post-receive script.

skainz-guest pushed a commit to branch master
in repository rtax.

commit 05ebd5b941d5fc71f3fb50ab86b97ec90ee38df6
Author: Simon Kainz <simon at familiekainz.at>
Date:   Thu Nov 27 12:37:57 2014 +0000

    Upstream author moved to github.com, updated all metadata URLs.
    Bump standards-Verson to 3.9.6.
---
 debian/changelog         | 11 +++++++++++
 debian/control           |  2 +-
 debian/copyright         |  2 +-
 debian/rtax.1            | 12 ++++++------
 debian/upstream/metadata | 12 ++++++------
 5 files changed, 25 insertions(+), 14 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 4d2c951..ab2e532 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,14 @@
+rtax (0.984-3) unstable; urgency=medium
+
+  * Team upload.
+
+  * Upstream author moved to github.com, updated all metadata URLs.
+
+  * Move debian/upstream to debian/upstream/metadata (Thanks to 
+    James McCoy <jamessan at debian.org> ). Removes lintian warning.
+
+ -- Simon Kainz <simon at familiekainz.at>  Thu, 27 Nov 2014 12:03:57 +0000
+
 rtax (0.984-2) unstable; urgency=medium
 
   * Team upload.
diff --git a/debian/control b/debian/control
index 66ed79d..5564c40 100644
--- a/debian/control
+++ b/debian/control
@@ -4,7 +4,7 @@ Uploaders: Simon Kainz <simon at familiekainz.at>
 Section: science
 Priority: optional
 Build-Depends: debhelper (>= 9)
-Standards-Version: 3.9.5
+Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/rtax.git
 Vcs-Git: git://anonscm.debian.org/debian-med/rtax.git
 Homepage: http://dev.davidsoergel.com/rtax
diff --git a/debian/copyright b/debian/copyright
index 17c94a3..5a02073 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,7 +1,7 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: RTAX
 Upstream-Contact: David A. W. Soergel <soergel at cs.umass.edu>
-Source: http://hg.davidsoergel.com/rtax
+Source: https://github.com/davidsoergel/rtax
 
 Files: *
 Copyright: © 2011 Regents of the University of California
diff --git a/debian/rtax.1 b/debian/rtax.1
index dfdbb34..72ebfcf 100644
--- a/debian/rtax.1
+++ b/debian/rtax.1
@@ -1,4 +1,4 @@
-.TH "rtax" 1 "27 Nov 2013"
+.TH "rtax" 1 "27 Nov 2014"
 .SH "NAME"
 rtax - Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
 .SH "SYNOPSIS"
@@ -36,20 +36,20 @@ text file containing sequence IDs to process, one per line
 delimiter separating the two reads when provided in a single file
 .TP 13
 .I \-m  tempdir
-temporary directory.  Will be removed on successful completion, but likely not if there is an error.
+temporary directory.  Will be removed on successful completion, but likely not if there is an error
 .TP 13
 .I \-f  
-for sequences where only one read is available, fall back to single-ended classification.  Default: drop these sequences.
+for sequences where only one read is available, fall back to single-ended classification.  Default: drop these sequences
 .TP 13
 .I \-g
-for sequences where one read is overly generic, do not fall back to single-ended classification.  Default: classify these sequences based on only the more specific read.
+for sequences where one read is overly generic, do not fall back to single-ended classification.  Default: classify these sequences based on only the more specific read
 .TP 13
 .I \-o  classifications.out
 output path
 .SH EXAMPLES
-A quickstart example can be found here: \fIhttp://dev.davidsoergel.com/trac/rtax/wiki/QuickStart\fR
+A quickstart example can be found here: \fIhttps://github.com/davidsoergel/rtax/wiki/QuickStart\fR
 .P
-Rtax can also be used within \fIQIIME\fR workflows, se this link for more information: \fIhttp://www.qiime.org/tutorials/rtax.html\fR
+Rtax can also be used within \fIQIIME\fR workflows, see this link for more information: \fIhttp://www.qiime.org/tutorials/rtax.html\fR
 .SH AUTHOR
 This manual page was written by Simon Kainz <simon at familiekainz.at> for the rtax package.
 .P
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
index 4b6cd23..fed95e6 100644
--- a/debian/upstream/metadata
+++ b/debian/upstream/metadata
@@ -1,11 +1,11 @@
 Name: rtax
-Homepage: http://dev.davidsoergel.com/trac/rtax/
-Bug-Database: http://dev.davidsoergel.com/trac/rtax/report/1
-Bug-Submit: http://dev.davidsoergel.com/trac/rtax/newticket
-Changelog: http://hg.davidsoergel.com/rtax/src/tip/changelog
+Homepage: http://dev.davidsoergel.com/rtax
+Bug-Database: https://github.com/davidsoergel/rtax/issues
+Bug-Submit: https://github.com/davidsoergel/rtax/issues/new
+Changelog: https://github.com/davidsoergel/rtax/commits/master
 Contact: dev at davidsoergel.com
-Repository: http://hg.davidsoergel.com/rtax
-Repository-Browse: http://hg.davidsoergel.com/rtax/src
+Repository: https://github.com/davidsoergel/rtax.git
+Repository-Browse: https://github.com/davidsoergel/rtax
 Reference:
   Author: David A W Soergel and Neelendu Dey and Rob Knight and Steven E Brenner
   Title: Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/rtax.git

