[med-svn] r19029 - in trunk/packages/rna-star/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2015-04-04 10:32:49 +0000 (Sat, 04 Apr 2015)
New Revision: 19029

Modified:
   trunk/packages/rna-star/trunk/debian/changelog
   trunk/packages/rna-star/trunk/debian/patches/donotuse_own_htslib.patch
Log:
Upload to unstable


Modified: trunk/packages/rna-star/trunk/debian/changelog
===================================================================
--- trunk/packages/rna-star/trunk/debian/changelog	2015-04-04 08:39:15 UTC (rev 19028)
+++ trunk/packages/rna-star/trunk/debian/changelog	2015-04-04 10:32:49 UTC (rev 19029)
@@ -1,4 +1,4 @@
-rna-star (2.4.0k-1) UNRELEASED; urgency=medium
+rna-star (2.4.0k-1) unstable; urgency=medium
 
   * New upstream version (adapted patches)
   * Solve build issue on mipsel (thanks to Jurica Stanojkovic

Modified: trunk/packages/rna-star/trunk/debian/patches/donotuse_own_htslib.patch
===================================================================
--- trunk/packages/rna-star/trunk/debian/patches/donotuse_own_htslib.patch	2015-04-04 08:39:15 UTC (rev 19028)
+++ trunk/packages/rna-star/trunk/debian/patches/donotuse_own_htslib.patch	2015-04-04 10:32:49 UTC (rev 19029)
@@ -94,12 +94,23 @@
  #include "Stats.h"
 --- a/source/IncludeDefine.h
 +++ b/source/IncludeDefine.h
-@@ -24,7 +24,7 @@
+@@ -24,8 +24,8 @@
  #include "VERSION"
  
  //external libs
 -#define SAMTOOLS_BGZF_H "htslib/htslib/bgzf.h"
+-#define SAMTOOLS_SAM_H  "htslib/htslib/sam.h"
 +#define SAMTOOLS_BGZF_H <htslib/bgzf.h>
- #define SAMTOOLS_SAM_H  "htslib/htslib/sam.h"
++#define SAMTOOLS_SAM_H  <htslib/sam.h>
  
  using namespace std;
+ 
+--- a/source/BAMfunctions.cpp
++++ b/source/BAMfunctions.cpp
+@@ -1,5 +1,5 @@
+ #include "BAMfunctions.h"
+-#include "htslib/htslib/kstring.h"
++#include <htslib/kstring.h>
+ 
+ string bam_cigarString (bam1_t *b) {//output CIGAR string
+ //    kstring_t strK;