[med-svn] [mugsy] 01/01: Gert Wollny says: rna_alphabet.h seems to provide similar functionality as seqan/basic/alphabet_residue.h (see https://lists.debian.org/debian-med/2015/04/msg00007.html)

[Andreas Tille]

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tille pushed a commit to branch master
in repository mugsy.

commit 5e039b977039b816e53bb255f67cc20ff2c94321
Author: Andreas Tille <tille at debian.org>
Date:   Wed Apr 15 11:42:41 2015 +0200

    Gert Wollny says: rna_alphabet.h seems to provide similar functionality as seqan/basic/alphabet_residue.h (see https://lists.debian.org/debian-med/2015/04/msg00007.html)
---
 debian/patches/mugsy-seqan.patch | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/debian/patches/mugsy-seqan.patch b/debian/patches/mugsy-seqan.patch
index 8c9c8f5..ca47e42 100644
--- a/debian/patches/mugsy-seqan.patch
+++ b/debian/patches/mugsy-seqan.patch
@@ -11,12 +11,15 @@
  	mkdir -p ${INSTALL_DIR}
 --- a/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp
 +++ b/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp
-@@ -31,7 +31,7 @@ time_t lasttime;
+@@ -31,9 +31,9 @@ time_t lasttime;
  #include <seqan/graph_types.h>
  #include <seqan/graph_align.h>
  #include <seqan/modifier.h>
 -#include <seqan/refinement.h>
 +#include <seqan/graph_msa/graph_align_tcoffee_refinement.h>
  
- #include "rna_alphabet.h"
+-#include "rna_alphabet.h"
++// #include "rna_alphabet.h" // see https://lists.debian.org/debian-med/2015/04/msg00007.html
  #include <seqan/modifier.h>
+ #include <seqan/misc/misc_cmdparser.h>
+ 

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