[med-svn] r19077 - trunk/packages/mauve/trunk/debian

Sun Apr 19 06:55:07 UTC 2015

Author: tille
Date: 2015-04-19 06:55:04 +0000 (Sun, 19 Apr 2015)
New Revision: 19077

Modified:
   trunk/packages/mauve/trunk/debian/README.Debian
   trunk/packages/mauve/trunk/debian/changelog
   trunk/packages/mauve/trunk/debian/control
   trunk/packages/mauve/trunk/debian/copyright
   trunk/packages/mauve/trunk/debian/rules
   trunk/packages/mauve/trunk/debian/watch
Log:
Update packaging


Modified: trunk/packages/mauve/trunk/debian/README.Debian
===================================================================

--- trunk/packages/mauve/trunk/debian/README.Debian	2015-04-17 20:38:59 UTC (rev 19076)
+++ trunk/packages/mauve/trunk/debian/README.Debian	2015-04-19 06:55:04 UTC (rev 19077)
@@ -1,12 +1,7 @@
-Mauve for Debian
-----------------
+libMems for Debian
+------------------
 
-ATTENTION:
-This package build-depends from libclustalw which has some
-license issues and thus can not be distributed by Debian
-for the moment.  There are unofficial packages avialable
-from
+This library is packaged as a precondition of the Mauve
+multiple genome alignment package.
 
-   http://people.debian.org/~tille/packages/libclustalw/
-
- -- Andreas Tille <tille at debian.org>  Thu, 14 Feb 2008 22:13:45 +0100
+ -- Andreas Tille <tille at debian.org>  Fri, 17 Apr 2015 15:38:22 +0200

Modified: trunk/packages/mauve/trunk/debian/changelog
===================================================================
--- trunk/packages/mauve/trunk/debian/changelog	2015-04-17 20:38:59 UTC (rev 19076)
+++ trunk/packages/mauve/trunk/debian/changelog	2015-04-19 06:55:04 UTC (rev 19077)
@@ -1,5 +1,5 @@
-mauve (2.1.1-1) unstable; urgency=low
+mauve (2.4.0+4734-1) UNRELEASED; urgency=medium
 
   * Initial release (Closes: #??????)
 
- -- Andreas Tille <tille at debian.org>  Thu, 13 Mar 2008 15:16:59 +0100
+ -- Andreas Tille <tille at debian.org>  Fri, 17 Apr 2015 15:38:22 +0200

Modified: trunk/packages/mauve/trunk/debian/control
===================================================================
--- trunk/packages/mauve/trunk/debian/control	2015-04-17 20:38:59 UTC (rev 19076)
+++ trunk/packages/mauve/trunk/debian/control	2015-04-19 06:55:04 UTC (rev 19077)
@@ -4,16 +4,18 @@
 Section: science
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               libmems-1.5-1-dev
+               dh-autoreconf,
+               libmems-1.6-1-dev
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/mauve/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/mauve/trunk/
-Homepage: http://darlinglab.org/mauve/mauve.html
+Homepage: http://darlinglab.org/mauve/
 
 Package: mauve
 Architecture: any
 Section: science
-Depends: ${devlibs:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Description: multiple genome alignment
  Mauve is a system for efficiently constructing multiple genome alignments
  in the presence of large-scale evolutionary events such as rearrangement

Modified: trunk/packages/mauve/trunk/debian/copyright
===================================================================
--- trunk/packages/mauve/trunk/debian/copyright	2015-04-17 20:38:59 UTC (rev 19076)
+++ trunk/packages/mauve/trunk/debian/copyright	2015-04-19 06:55:04 UTC (rev 19077)
@@ -1,24 +1,21 @@
-X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-X-Debianized-By: Andreas Tille <tille at debian.org>
-X-Debinized-Date: Thu, 13 Mar 2008 15:16:59 +0100
-X-Source-Downloaded-From: http://gel.ahabs.wisc.edu/mauve/source/mauve_2.1.1/
-X-Upstream-Author: © 2003, 2004, 2005, 2006, 2007, Aaron Darling -- darling at cs.wisc.edu
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: libMems
+Upstream-Contact: Aaron Darling <darling at cs.wisc.edu>
+Source: http://sourceforge.net/p/mauve/code/HEAD/tree/libMems/trunk/
 
+Files: *
+Copyright: 2003 - 2014 Aaron Darling -- darling at cs.wisc.edu
+License: GPL-2+
+
 Files: debian/*
-Copyright: © 2008, Andreas Tille <tille at debian.org>
+Copyright: 2015 Andreas Tille <tille at debian.org>
 License: GPL-2+
+
+License: GPL-2+
  This package is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  (at your option) any later version.
-
-Files: *
-Copyright: © 2003, 2004, 2005, 2006, 2007, Aaron Darling -- darling at cs.wisc.edu
-
-License: GPL-2
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation version 2 of the License.
-
-On Debian systems, the complete text of the licenses can be found in:
-GPL-2 - `/usr/share/common-licenses/GPL-2'
+ .
+ On Debian systems, the complete text of the licenses can be found in:
+ GPL-2 - `/usr/share/common-licenses/GPL-2'

Modified: trunk/packages/mauve/trunk/debian/rules
===================================================================
--- trunk/packages/mauve/trunk/debian/rules	2015-04-17 20:38:59 UTC (rev 19076)
+++ trunk/packages/mauve/trunk/debian/rules	2015-04-19 06:55:04 UTC (rev 19077)
@@ -1,8 +1,21 @@
 #!/usr/bin/make -f
 
-include /usr/share/cdbs/1/rules/patchsys-quilt.mk
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/ant.mk
+%:
+	dh $@ --with autoreconf
 
+override_dh_install:
+	dh_install
+	d-shlibmove --commit \
+	            --multiarch \
+		    --devunversioned \
+		    --exclude-la \
+		    --movedev debian/tmp/usr/include/* usr/include \
+		    --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig \
+		    debian/tmp/usr/lib/*/*.so
+
+#override_dh_auto_test:
+#	echo 'Disable test since some header (gnDNXSource.h) seems to be missing.'
+
 get-orig-source:
 	. debian/get-orig-source
+

Modified: trunk/packages/mauve/trunk/debian/watch
===================================================================
--- trunk/packages/mauve/trunk/debian/watch	2015-04-17 20:38:59 UTC (rev 19076)
+++ trunk/packages/mauve/trunk/debian/watch	2015-04-19 06:55:04 UTC (rev 19077)
@@ -1,3 +1 @@
-version=3
-
-http://gel.ahabs.wisc.edu/mauve/source/mauve_(.*)/mauve-(.*)\.tar\.gz
+# There is no tarball download location, libMuscle is only available in SVN


