[med-svn] r19080 - in trunk/packages/R: . r-cran-seroincidence r-cran-seroincidence/trunk r-cran-seroincidence/trunk/debian r-cran-seroincidence/trunk/debian/source
Andreas Tille
tille at moszumanska.debian.org
Mon Apr 20 21:15:27 UTC 2015
Author: tille
Date: 2015-04-20 21:15:27 +0000 (Mon, 20 Apr 2015)
New Revision: 19080
Added:
trunk/packages/R/r-cran-seroincidence/
trunk/packages/R/r-cran-seroincidence/trunk/
trunk/packages/R/r-cran-seroincidence/trunk/debian/
trunk/packages/R/r-cran-seroincidence/trunk/debian/changelog
trunk/packages/R/r-cran-seroincidence/trunk/debian/compat
trunk/packages/R/r-cran-seroincidence/trunk/debian/control
trunk/packages/R/r-cran-seroincidence/trunk/debian/copyright
trunk/packages/R/r-cran-seroincidence/trunk/debian/rules
trunk/packages/R/r-cran-seroincidence/trunk/debian/source/
trunk/packages/R/r-cran-seroincidence/trunk/debian/source/format
trunk/packages/R/r-cran-seroincidence/trunk/debian/watch
Log:
Inject r-cran-seroincicence
Added: trunk/packages/R/r-cran-seroincidence/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-seroincidence/trunk/debian/changelog (rev 0)
+++ trunk/packages/R/r-cran-seroincidence/trunk/debian/changelog 2015-04-20 21:15:27 UTC (rev 19080)
@@ -0,0 +1,5 @@
+r-cran-seroincidence (1.0.3-1) UNRELEASED; urgency=low
+
+ * Initial release (closes: #???).
+
+ -- Andreas Tille <tille at debian.org> Thu, 19 Nov 2009 15:38:39 +0100
Added: trunk/packages/R/r-cran-seroincidence/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-seroincidence/trunk/debian/compat (rev 0)
+++ trunk/packages/R/r-cran-seroincidence/trunk/debian/compat 2015-04-20 21:15:27 UTC (rev 19080)
@@ -0,0 +1 @@
+9
Added: trunk/packages/R/r-cran-seroincidence/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-seroincidence/trunk/debian/control (rev 0)
+++ trunk/packages/R/r-cran-seroincidence/trunk/debian/control 2015-04-20 21:15:27 UTC (rev 19080)
@@ -0,0 +1,35 @@
+Source: r-cran-seroincidence
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-seroincidence/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-seroincidence/trunk/
+Homepage: http://ecdc.europa.eu/en/data-tools/seroincidence-calculator-tool/Pages/default.aspx
+
+Package: r-cran-seroincidence
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${R:Depends}
+Description: GNU R Seroincidence calculator tool
+ Antibody levels measured in a cross-sectional population samples can be
+ translated into an estimate of the frequency with which seroconversions
+ (new infections) occur. In order to interpret the measured
+ cross-sectional antibody levels, parameters which predict the decay of
+ antibodies must be known. In previously published reports (Simonsen et
+ al. 2009 and Versteegh et al. 2005), this information has been obtained
+ from longitudinal studies on subjects who had culture-confirmed
+ Salmonella and Campylobacter infections. A Bayesian back-calculation
+ model was used to convert antibody measurements into an estimation of
+ time since infection. This can be used to estimate the seroincidence in
+ the cross-sectional sample of population. For both the longitudinal and
+ cross-sectional measurements of antibody concentrations, the indirect
+ ELISA was used. The models are only valid for persons over 18 years. The
+ seroincidence estimates are suitable for monitoring the effect of
+ control programmes when representative cross-sectional serum samples are
+ available for analyses. These provide more accurate information on the
+ infection pressure in humans across countries.
Added: trunk/packages/R/r-cran-seroincidence/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-seroincidence/trunk/debian/copyright (rev 0)
+++ trunk/packages/R/r-cran-seroincidence/trunk/debian/copyright 2015-04-20 21:15:27 UTC (rev 19080)
@@ -0,0 +1,30 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: seroincidence
+Upstream-Contact: Chantal Quinten <seroincidence at ecdc.europa.eu>
+Source: http://cran.r-project.org/web/checks/check_results_seroincidence.html
+
+Files: *
+Copyright: 2009-2015 Chantal Quinten <seroincidence at ecdc.europa.eu>
+License: GPL-3+
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: GPL-3+
+
+License: GPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU Public
+ License version 2 can be found in `/usr/share/common-licenses/GPL-2'.
+
Added: trunk/packages/R/r-cran-seroincidence/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-seroincidence/trunk/debian/rules (rev 0)
+++ trunk/packages/R/r-cran-seroincidence/trunk/debian/rules 2015-04-20 21:15:27 UTC (rev 19080)
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
Property changes on: trunk/packages/R/r-cran-seroincidence/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-cran-seroincidence/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-seroincidence/trunk/debian/source/format (rev 0)
+++ trunk/packages/R/r-cran-seroincidence/trunk/debian/source/format 2015-04-20 21:15:27 UTC (rev 19080)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-cran-seroincidence/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-seroincidence/trunk/debian/watch (rev 0)
+++ trunk/packages/R/r-cran-seroincidence/trunk/debian/watch 2015-04-20 21:15:27 UTC (rev 19080)
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/seroincidence_([-\d.]+)\.tar\.gz
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