[med-svn] [plink1.9] 02/02: Merge tag 'upstream/1.90_b3l-150418'

[Dylan Aïssi]

This is an automated email from the git hooks/post-receive script.

bob.dybian-guest pushed a commit to branch master
in repository plink1.9.

commit ee54642eb03e4dbef9c47733a37dd5cc3e9929dc
Merge: 54a8a21 71a56b4
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Mon Apr 27 05:21:40 2015 +0200

    Merge tag 'upstream/1.90_b3l-150418'
    
    Upstream version 1.90~b3l-150418

 Makefile         |    2 +-
 bgzf.c           | 1123 +++++++++++++++++++++++++++++++++++++++++++++++++
 bgzf.h           |  313 ++++++++++++++
 hfile.c          |  578 ++++++++++++++++++++++++++
 hfile.h          |  212 ++++++++++
 hfile_internal.h |   76 ++++
 hts.h            |  456 ++++++++++++++++++++
 hts_defs.h       |   55 +++
 khash.h          |  619 +++++++++++++++++++++++++++
 pigz.c           |  463 +++++++++++++++++----
 pigz.h           |  148 ++++++-
 plink.c          |  525 +++++++++++++++--------
 plink_assoc.c    |    8 +-
 plink_calc.c     |  993 +++++++++++++++++++++++---------------------
 plink_calc.h     |    4 +-
 plink_cluster.c  |    7 +-
 plink_common.c   |  153 +++----
 plink_common.h   |  149 ++++---
 plink_data.c     |  376 ++++++++++++-----
 plink_dosage.c   |  330 +++++----------
 plink_family.c   | 1216 +++++++++++++++++++++++++++++++++++++++++++++++++-----
 plink_family.h   |   26 +-
 plink_filter.c   |  233 +++++++----
 plink_filter.h   |    8 +-
 plink_glm.c      |   45 +-
 plink_help.c     |   78 ++--
 plink_ld.c       |   43 +-
 plink_misc.c     |  326 +++++++--------
 plink_misc.h     |   10 +-
 plink_set.c      |    1 +
 yarn.h           |    5 +
 31 files changed, 6969 insertions(+), 1612 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/plink1.9.git