[med-svn] [prokka] branch upstream updated (1e41103 -> 7a81aea)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository prokka.

      from  1e41103   Imported Upstream version 1.10+dfsg
       new  7a81aea   Imported Upstream version 1.11+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                     |  24 +++
 README.md                      | 374 +++++++++++++++++++++++++++++++++
 bin/prokka                     | 179 +++++++++++-----
 bin/prokka-genbank_to_fasta_db |  62 ++++--
 bin/prokka-uniprot_to_fasta_db |   9 +-
 db/hmm/CLUSTERS.hmm            | Bin 375777699 -> 0 bytes
 db/hmm/Pfam.hmm                | Bin 327312167 -> 0 bytes
 doc/ChangeLog.txt              |  19 ++
 doc/ToDoList.txt               |   6 +-
 doc/prokka-manual.html         | 215 -------------------
 doc/prokka-manual.txt          | 454 -----------------------------------------
 11 files changed, 597 insertions(+), 745 deletions(-)
 create mode 100644 .gitignore
 create mode 100644 README.md
 delete mode 100644 db/hmm/CLUSTERS.hmm
 delete mode 100644 db/hmm/Pfam.hmm
 delete mode 100644 doc/prokka-manual.html
 delete mode 100644 doc/prokka-manual.txt

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