[med-svn] [sga] 02/02: Work a bit into testing (far from finishing)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch debian
in repository sga.

commit ab8aa045f60918e979b17f192565dc135811af0a
Author: Andreas Tille <tille at debian.org>
Date:   Sun Feb 1 11:30:58 2015 +0100

    Work a bit into testing (far from finishing)
---
 debian/changelog |  5 +++++
 debian/control   |  3 ++-
 debian/rules     | 14 ++++++++++++++
 3 files changed, 21 insertions(+), 1 deletion(-)

diff --git a/debian/changelog b/debian/changelog
index 168fb46..e5cf65c 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,5 +1,10 @@
 sga (0.10.13-1) UNRELEASED; urgency=low
 
   * Initial release (Closes: #692332)
+  TODO: configure says:
+  checking unordered_map usability... no
+  checking unordered_map presence... no
+  checking for unordered_map... no
+
 
  -- Andreas Tille <tille at debian.org>  Wed, 28 May 2014 07:40:21 +0200
diff --git a/debian/control b/debian/control
index f9c506c..f7d3445 100644
--- a/debian/control
+++ b/debian/control
@@ -19,7 +19,8 @@ Homepage: https://github.com/jts/sga
 Package: sga
 Architecture: any
 Depends: ${shlibs:Depends},
-         ${misc:Depends}
+         ${misc:Depends},
+         python
 Recommends: abyss
 Description: de novo genome assembler that uses string graphs
  The major goal of SGA is to be very memory efficient, which is achieved by
diff --git a/debian/rules b/debian/rules
index c10e165..16db68d 100755
--- a/debian/rules
+++ b/debian/rules
@@ -15,6 +15,20 @@ version=$(shell dpkg-parsechangelog -ldebian/changelog | grep Version: | cut -f2
 mandir=$(CURDIR)/debian/$(pkg)/usr/share/man/man1/
 bindir=$(CURDIR)/debian/$(pkg)/usr/bin
 
+override_dh_auto_install:
+	dh_auto_install
+	cp -a src/bin/sga-bam2de.pl	debian/$(pkg)/usr/bin/sga-bam2de
+	cp -a src/bin/sga-astat.py	debian/$(pkg)/usr/bin/sga-astat
+
+override_dh_installexamples:
+	dh_installexamples
+	mkdir -p debian/$(pkg)/usr/share/doc/$(pkg)/examples
+	sed -e 's?^\(SGA_BIN=sga\).*?\1?' \
+	    -e 's?^.*/bin/sga-align?sga-align?' \
+	    -e 's?^.*/bin/sga-bam2de.pl?sga-bam2de?' \
+	    -e 's?^.*/bin/sga-astat.py?sga-astat?' \
+	    src/examples/sga-celegans.sh > debian/$(pkg)/usr/share/doc/$(pkg)/examples/sga-celegans.sh
+
 override_dh_installman:
 	mkdir -p $(mandir)
 	PATH=/usr/lib/abyss:${PATH} \

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/sga.git