[med-svn] [sra-sdk] 02/02: Help configure finding Debian packaged libraries

[Andreas Tille]

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tille pushed a commit to branch master
in repository sra-sdk.

commit 9df1a87300fcfb41cf4d67eae988df51b13283d6
Author: Andreas Tille <tille at debian.org>
Date:   Mon Feb 2 22:00:31 2015 +0100

    Help configure finding Debian packaged libraries
---
 debian/patches/find_configure_libs.patch | 34 ++++++++++++++++++++++++++++++++
 debian/patches/series                    |  1 +
 2 files changed, 35 insertions(+)

diff --git a/debian/patches/find_configure_libs.patch b/debian/patches/find_configure_libs.patch
new file mode 100644
index 0000000..09b05d4
--- /dev/null
+++ b/debian/patches/find_configure_libs.patch
@@ -0,0 +1,34 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Changed: Mon, 02 Feb 2015 22:00:07 +0100
+Description: Help configure finding Debian packaged libraries
+
+--- a/konfigure.perl
++++ b/konfigure.perl
+@@ -997,7 +997,7 @@ sub find_lib {
+         my ($library, $log);
+ 
+         if ($n eq 'hdf5') {
+-            $library = '-lhdf5';
++            $library = '-lhdf5_serial';
+             $log = '#include <hdf5.h>            \n main() { H5close     (); }';
+         } elsif ($n eq 'xml2') {
+             $library = '-lxml2';
+--- a/package.pm
++++ b/package.pm
+@@ -9,7 +9,7 @@ sub PKG { ( LNG   => 'C',
+             OUT   => 'ncbi-outdir',
+             PATH  => '/usr/local/ncbi/sra-tools',
+             UPATH =>      '$HOME/ncbi/sra-tools', ) }
+-sub DEPENDS      { ( { name => 'hdf5' , },
++sub DEPENDS      { ( { name => 'hdf5' , Include => '/usr/include/hdf5/serial/'},
+                      { name => 'magic', Include => '/usr/include'        , },
+                      { name => 'xml2' , Include => '/usr/include/libxml2', } ) }
+ sub REQ { (
+@@ -47,6 +47,6 @@ sub REQ { (
+               pkgpath => '/usr',
+               usrpath => '$HOME',
+               include => 'hdf5.h',
+-              lib => 'libhdf5.a',
++              lib => 'libhdf5_serial.a',
+         } ) }
+ 1
diff --git a/debian/patches/series b/debian/patches/series
index 523daa0..72b0e2c 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
+find_configure_libs.patch
 10_portability.patch
 hardening.patch

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