[med-svn] r18763 - in trunk/packages/python-miso/trunk/debian: . bin

[Andreas Tille]

Author: tille
Date: 2015-02-12 13:16:14 +0000 (Thu, 12 Feb 2015)
New Revision: 18763

Added:
   trunk/packages/python-miso/trunk/debian/bin/
   trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
Modified:
   trunk/packages/python-miso/trunk/debian/control
   trunk/packages/python-miso/trunk/debian/rules
Log:
Package builds including test suite (after doing some trick :-))


Added: trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
===================================================================
--- trunk/packages/python-miso/trunk/debian/bin/sam_to_bam	                        (rev 0)
+++ trunk/packages/python-miso/trunk/debian/bin/sam_to_bam	2015-02-12 13:16:14 UTC (rev 18763)
@@ -0,0 +1,2 @@
+#!/bin/sh
+python misopy/sam_to_bam.py $@


Property changes on: trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
___________________________________________________________________
Added: svn:executable
   + *

Modified: trunk/packages/python-miso/trunk/debian/control
===================================================================
--- trunk/packages/python-miso/trunk/debian/control	2015-02-12 10:48:31 UTC (rev 18762)
+++ trunk/packages/python-miso/trunk/debian/control	2015-02-12 13:16:14 UTC (rev 18763)
@@ -9,7 +9,8 @@
                python-all-dev,
                python-setuptools,
                python-pysam,
-               python-scipy
+               python-scipy,
+               python-matplotlib
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/python-miso/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/python-miso/trunk/
@@ -20,7 +21,10 @@
 Architecture: any
 Depends: ${shlibs:Depends},
          ${python:Depends},
-         ${misc:Depends}
+         ${misc:Depends},
+         python-pysam,
+         python-scipy,
+         python-matplotlib
 Description: Mixture of Isoforms model for RNA-Seq isoform quantitation
  MISO (Mixture of Isoforms) is a probabilistic framework that quantitates
  the expression level of alternatively spliced genes from RNA-Seq

Modified: trunk/packages/python-miso/trunk/debian/rules
===================================================================
--- trunk/packages/python-miso/trunk/debian/rules	2015-02-12 10:48:31 UTC (rev 18762)
+++ trunk/packages/python-miso/trunk/debian/rules	2015-02-12 13:16:14 UTC (rev 18763)
@@ -6,6 +6,13 @@
 %:
 	dh $@ --with python2 --buildsystem=pybuild
 
+override_dh_auto_test:
+	
+	PATH=$(CURDIR)/debian/bin:$${PATH} \
+	PYBUILD_SYSTEM=custom \
+	PYBUILD_TEST_ARGS="ln -s ../../../../misopy/test-data {build_dir}/misopy && cd {build_dir} && PYTHONPATH={build_dir} python -m unittest discover -v" \
+	dh_auto_test --buildsystem=pybuild
+
 override_dh_clean:
 	rm -rf tmp a.out
 	dh_clean