[med-svn] r18787 - in trunk/packages/ncbi-blast+/tags: . 2.2.30-2/debian 2.2.30-2/debian/patches

Aaron M. Ucko ucko at moszumanska.debian.org
Tue Feb 17 03:48:15 UTC 2015


Author: ucko
Date: 2015-02-17 03:48:14 +0000 (Tue, 17 Feb 2015)
New Revision: 18787

Added:
   trunk/packages/ncbi-blast+/tags/2.2.30-2/
   trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/changelog
   trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/allow_gcc5
   trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/series
Removed:
   trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/changelog
   trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/series
Log:
[svn-buildpackage] Tagging ncbi-blast+ 2.2.30-2

Deleted: trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/changelog
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/changelog	2015-02-17 01:25:18 UTC (rev 18782)
+++ trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/changelog	2015-02-17 03:48:14 UTC (rev 18787)
@@ -1,200 +0,0 @@
-ncbi-blast+ (2.2.30-1) UNRELEASED; urgency=medium
-
-  * New upstream release
-  * d/control: switch to Standards 3.9.6 
-               fix svn url
-  * d/patches/fix_compilation: fix compilation issue
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 21 Nov 2014 18:21:26 +0100
-
-ncbi-blast+ (2.2.29-3) unstable; urgency=medium
-
-  * debian/patches/include_typeinfo: Patch include/corelib/ncbistl.hpp to
-    ensure sufficient coverage; fix typos in patch headers.  (Closes: #753190.)
-  * Standards-Version: 3.9.4.  (Already compliant.)
-
- -- Aaron M. Ucko <ucko at debian.org>  Tue, 01 Jul 2014 18:27:46 -0400
-
-ncbi-blast+ (2.2.29-2) unstable; urgency=medium
-
-  * d/patches/include_typeinfo (Closes: #753190).
-
- -- Olivier Sallou <osallou at debian.org>  Sat, 07 Jun 2014 11:28:22 +0200
-
-ncbi-blast+ (2.2.29-1) unstable; urgency=medium
-
-  * New upstream release 
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 06 Jun 2014 22:38:40 +0200
-
-ncbi-blast+ (2.2.28-2) unstable; urgency=low
-
-  * debian/patches/use_pie_for_apps: Explicitly build all executables with
-    -fPIE -pie, to avoid giving project_tree_builder a partial PIE
-    treatment that now fails on mips and mipsel.  (Closes: #710807.)
-  * debian/rules: Retire redundant APP_LDFLAGS override.
-  * Standards-Version: 3.9.4.  (Already compliant.)
-  
- -- Aaron M. Ucko <ucko at debian.org>  Sun, 02 Jun 2013 23:00:44 -0400
-
-ncbi-blast+ (2.2.28-1) unstable; urgency=low
-
-  * New upstream release
-    - Thanks to Tim Booth for package update help.
-
- -- Olivier Sallou <osallou at debian.org>  Sat, 01 Jun 2013 08:40:51 +0200
-
-ncbi-blast+ (2.2.27-3) unstable; urgency=low
-
-  * debian/series: active patch fix_arm_mips_build (Closes: #688661).
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 05 Oct 2012 11:03:03 +0200
-
-ncbi-blast+ (2.2.27-2) unstable; urgency=low
-
-  * debian/patches/fix_arm_mips_build: Fix FTBS on ARM and MIPS
-    (Closes: #688661).
-  * debian/rules: rename seedtop to seedtop+ to avoid blast2 conflict
-    (Closes: #688684).
-
- -- Olivier Sallou <osallou at debian.org>  Mon, 24 Sep 2012 09:28:29 +0200
-
-ncbi-blast+ (2.2.27-1) unstable; urgency=low
-
-  * New upstream release 
-
- -- Olivier Sallou <osallou at debian.org>  Fri, 21 Sep 2012 17:25:41 +0200
-
-ncbi-blast+ (2.2.26-3) unstable; urgency=low
-
-  [ Aaron M. Ucko ]
-  * debian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation
-    errors and warnings.  (Closes: #669679.)
-    - Explicitly qualify more dependent names originating in base templates.
-    - Directly #include headers as needed.
-    - Use modern syntax for making protected base members public.
-    - Add forward declarations as needed.
-  * Wrap and sort build dependencies to ease maintenance thereof.
-  * Enable full hardening flags, introducing a small patch
-    (use_pie_for_apps) to reflect the need to build executables and
-    libraries differently.
-  * Use upstream's new --with-symbols flag in nostrip builds.
-
-  [ Andreas Tille ]
-  * debian/control: Modernize Vcs-* fields.
-
- -- Aaron M. Ucko <ucko at debian.org>  Thu, 10 May 2012 23:42:49 -0400
-
-ncbi-blast+ (2.2.26-2) unstable; urgency=low
-
-  * debian/patches/wrong_path_to_touch.patch :Fix upstream FTBFS on the Hurd
-    hardcodes wrong path to touch (Closes: #663244)
-
- -- Olivier Sallou <osallou at debian.org>  Wed, 07 Mar 2012 17:29:23 +0100
-
-ncbi-blast+ (2.2.26-1) unstable; urgency=low
-
-  [ Olivier Sallou ]
-  * New upstream release 
-  * Remove some patches, applied upstream
-
-  [ Andreas Tille]
-  * debian/copyright: Added Upstream-Contact
-
- -- Olivier Sallou <osallou at debian.org>  Wed, 07 Mar 2012 09:37:10 +0100
-
-ncbi-blast+ (2.2.25-7) unstable; urgency=low
-
-  * Do not output everything to STDERR in
-    c++/src/app/blast/update_blastdb.pl
-    Closes: #644237
-  * debian/control: Depends s/${python:Depends}/python/ because
-    the python dependency of /usr/bin/windowmasker_2.2.22_adapter
-    is not detected obviosely
-  * debian/copyright: Indentation fixes to get DEP5 compatibility
-
- -- Andreas Tille <tille at debian.org>  Wed, 21 Dec 2011 15:47:04 +0100
-
-ncbi-blast+ (2.2.25-6) unstable; urgency=low
-
-   * debian/control:
-     Luca Capello <luca at pca.it>, fix reference for legacy_blast (Closes: #642986).
-     + add a new line to separate the actual description from usage
-      instruction in the long Description:.
-   * debian/rules: add gene_info_reader binary in package
-
- -- Olivier Sallou <olivier.sallou at irisa.fr>  Fri, 30 Sep 2011 12:31:05 -0400
-
-ncbi-blast+ (2.2.25-5) unstable; urgency=low
-
-  * Team upload.
-  * debian/patches/hurd_fixes: further patch configure(.ac) to reflect
-    -Wl,rpath,... support.  (Closes: #629656.)
-  * debian/patches/fix_lib_deps: link makembindex and srsearch against
-    libxconnect rather than libconnect for consistency with libblast,
-    which uses the former for consistency with other projects.
-
- -- Aaron M. Ucko <ucko at debian.org>  Mon, 29 Aug 2011 12:31:05 -0400
-
-ncbi-blast+ (2.2.25-4) unstable; urgency=low
-
-  [ Aaron M. Ucko ]
-  * Team upload.
-  * debian/patches/support_other_cpus: belatedly add a descriptive header.
-  * debian/patches/hurd_fixes: new; fix hurd-specific issues.
-    (In conjunction with the following change, finally closes: #629656.)
-  * debian/control:
-    - Build-Depends += libc0.3-dev (>= 2.13-9~) [hurd-i386] to avoid #630180.
-    - Declare both binary packages as Multi-Arch: foreign.
-  * debian/patches/fix_lib_deps: new; ensure that all libraries link against
-    all direct dependencies.  (Break the dependency loop between libxblast
-    and libxalgoblastdbindex by having the former provide only the C++ BLAST
-    API, leaving the C core only in libblast.)  (Closes: #633567.)
-  * debian/rules: tweak LDFLAGS, supplying -Wl,--as-needed across the
-    board (as it is now safe to do so) and adding -Wl,--enable-new-dtags
-    to allow LD_LIBRARY_PATH to override the private rpath.
-  * debian/patches/no_multiarch_rpath: new; avoid redundant rpath entries
-    on multiarch systems (courtesy of overzealous logic to ensure
-    executables will be able to find libstdc++.)
-
-  [ Andreas Tille ]
-  * Enhances: t-coffee (as stated in tasks file)
-
- -- Aaron M. Ucko <ucko at debian.org>  Sun, 28 Aug 2011 18:45:19 -0400
-
-ncbi-blast+ (2.2.25-3) unstable; urgency=low
-
-  * Team upload.
-  * debian/rules:
-    - Export MAKE to override an internal upstream build script that
-      otherwise incorrectly defaults to gmake on non-Linux
-      architectures. (Really closes: #629656, with any luck.)
-    - Force CONFIG_SHELL=/bin/bash to avoid lossage that can occur with zsh4
-      masquerading as ksh, which configure otherwise favors (due to complaints
-      from users with broken BASH_ENV scripts that change directories).
-
- -- Aaron M. Ucko <ucko at debian.org>  Thu, 09 Jun 2011 19:25:45 -0400
-
-ncbi-blast+ (2.2.25-2) unstable; urgency=low
-
-  * Team upload.
-  * Fix several sources of build failures (closes: #629656):
-    - debian/rules (override_dh_install): Correctly support building only
-      architecture-dependent packages.
-      (DEB_CONFIGURE_EXTRA_FLAGS): Add --without-caution to override the
-      upstream build system's reluctance to build shared libraries on the
-      Hurd or kFreeBSD, which it doesn't specifically recognize.  Limit C++
-      optimization level to -O (rather than the default -O2) on mips(el),
-      on which g++ otherwise crashes. :-/
-    - debian/patches/support_other_cpus (new; committed upstream too):
-      build correctly on architectures that wound up defining
-      NCBI_SLOW_ATOMIC_SWAP (spuriously in the case of powerpc,
-      whose detection the patch fixes as well).
-
- -- Aaron M. Ucko <ucko at debian.org>  Wed, 08 Jun 2011 21:42:52 -0400
-
-ncbi-blast+ (2.2.25-1) unstable; urgency=low
-
-  * Initial release (Closes: #624394) 
-
- -- Olivier Sallou <olivier.sallou at irisa.fr>  Wed, 08 Jun 2011 00:15:15 +0200

Copied: trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/changelog (from rev 18786, trunk/packages/ncbi-blast+/trunk/debian/changelog)
===================================================================
--- trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/changelog	                        (rev 0)
+++ trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/changelog	2015-02-17 03:48:14 UTC (rev 18787)
@@ -0,0 +1,207 @@
+ncbi-blast+ (2.2.30-2) experimental; urgency=medium
+
+  * d/patches/allow_gcc5 (new): Allow compilation with GCC 5, per upstream.
+    (Closes: #778021.)
+
+ -- Aaron M. Ucko <ucko at debian.org>  Mon, 16 Feb 2015 22:38:50 -0500
+
+ncbi-blast+ (2.2.30-1) experimental; urgency=medium
+
+  * New upstream release
+  * d/control: switch to Standards 3.9.6 
+               fix svn url
+  * d/patches/fix_compilation: fix compilation issue
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 21 Nov 2014 18:21:26 +0100
+
+ncbi-blast+ (2.2.29-3) unstable; urgency=medium
+
+  * debian/patches/include_typeinfo: Patch include/corelib/ncbistl.hpp to
+    ensure sufficient coverage; fix typos in patch headers.  (Closes: #753190.)
+  * Standards-Version: 3.9.4.  (Already compliant.)
+
+ -- Aaron M. Ucko <ucko at debian.org>  Tue, 01 Jul 2014 18:27:46 -0400
+
+ncbi-blast+ (2.2.29-2) unstable; urgency=medium
+
+  * d/patches/include_typeinfo (Closes: #753190).
+
+ -- Olivier Sallou <osallou at debian.org>  Sat, 07 Jun 2014 11:28:22 +0200
+
+ncbi-blast+ (2.2.29-1) unstable; urgency=medium
+
+  * New upstream release 
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 06 Jun 2014 22:38:40 +0200
+
+ncbi-blast+ (2.2.28-2) unstable; urgency=low
+
+  * debian/patches/use_pie_for_apps: Explicitly build all executables with
+    -fPIE -pie, to avoid giving project_tree_builder a partial PIE
+    treatment that now fails on mips and mipsel.  (Closes: #710807.)
+  * debian/rules: Retire redundant APP_LDFLAGS override.
+  * Standards-Version: 3.9.4.  (Already compliant.)
+  
+ -- Aaron M. Ucko <ucko at debian.org>  Sun, 02 Jun 2013 23:00:44 -0400
+
+ncbi-blast+ (2.2.28-1) unstable; urgency=low
+
+  * New upstream release
+    - Thanks to Tim Booth for package update help.
+
+ -- Olivier Sallou <osallou at debian.org>  Sat, 01 Jun 2013 08:40:51 +0200
+
+ncbi-blast+ (2.2.27-3) unstable; urgency=low
+
+  * debian/series: active patch fix_arm_mips_build (Closes: #688661).
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 05 Oct 2012 11:03:03 +0200
+
+ncbi-blast+ (2.2.27-2) unstable; urgency=low
+
+  * debian/patches/fix_arm_mips_build: Fix FTBS on ARM and MIPS
+    (Closes: #688661).
+  * debian/rules: rename seedtop to seedtop+ to avoid blast2 conflict
+    (Closes: #688684).
+
+ -- Olivier Sallou <osallou at debian.org>  Mon, 24 Sep 2012 09:28:29 +0200
+
+ncbi-blast+ (2.2.27-1) unstable; urgency=low
+
+  * New upstream release 
+
+ -- Olivier Sallou <osallou at debian.org>  Fri, 21 Sep 2012 17:25:41 +0200
+
+ncbi-blast+ (2.2.26-3) unstable; urgency=low
+
+  [ Aaron M. Ucko ]
+  * debian/patches/fix_gcc47_errors: fix various GCC 4.7 compilation
+    errors and warnings.  (Closes: #669679.)
+    - Explicitly qualify more dependent names originating in base templates.
+    - Directly #include headers as needed.
+    - Use modern syntax for making protected base members public.
+    - Add forward declarations as needed.
+  * Wrap and sort build dependencies to ease maintenance thereof.
+  * Enable full hardening flags, introducing a small patch
+    (use_pie_for_apps) to reflect the need to build executables and
+    libraries differently.
+  * Use upstream's new --with-symbols flag in nostrip builds.
+
+  [ Andreas Tille ]
+  * debian/control: Modernize Vcs-* fields.
+
+ -- Aaron M. Ucko <ucko at debian.org>  Thu, 10 May 2012 23:42:49 -0400
+
+ncbi-blast+ (2.2.26-2) unstable; urgency=low
+
+  * debian/patches/wrong_path_to_touch.patch :Fix upstream FTBFS on the Hurd
+    hardcodes wrong path to touch (Closes: #663244)
+
+ -- Olivier Sallou <osallou at debian.org>  Wed, 07 Mar 2012 17:29:23 +0100
+
+ncbi-blast+ (2.2.26-1) unstable; urgency=low
+
+  [ Olivier Sallou ]
+  * New upstream release 
+  * Remove some patches, applied upstream
+
+  [ Andreas Tille]
+  * debian/copyright: Added Upstream-Contact
+
+ -- Olivier Sallou <osallou at debian.org>  Wed, 07 Mar 2012 09:37:10 +0100
+
+ncbi-blast+ (2.2.25-7) unstable; urgency=low
+
+  * Do not output everything to STDERR in
+    c++/src/app/blast/update_blastdb.pl
+    Closes: #644237
+  * debian/control: Depends s/${python:Depends}/python/ because
+    the python dependency of /usr/bin/windowmasker_2.2.22_adapter
+    is not detected obviosely
+  * debian/copyright: Indentation fixes to get DEP5 compatibility
+
+ -- Andreas Tille <tille at debian.org>  Wed, 21 Dec 2011 15:47:04 +0100
+
+ncbi-blast+ (2.2.25-6) unstable; urgency=low
+
+   * debian/control:
+     Luca Capello <luca at pca.it>, fix reference for legacy_blast (Closes: #642986).
+     + add a new line to separate the actual description from usage
+      instruction in the long Description:.
+   * debian/rules: add gene_info_reader binary in package
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr>  Fri, 30 Sep 2011 12:31:05 -0400
+
+ncbi-blast+ (2.2.25-5) unstable; urgency=low
+
+  * Team upload.
+  * debian/patches/hurd_fixes: further patch configure(.ac) to reflect
+    -Wl,rpath,... support.  (Closes: #629656.)
+  * debian/patches/fix_lib_deps: link makembindex and srsearch against
+    libxconnect rather than libconnect for consistency with libblast,
+    which uses the former for consistency with other projects.
+
+ -- Aaron M. Ucko <ucko at debian.org>  Mon, 29 Aug 2011 12:31:05 -0400
+
+ncbi-blast+ (2.2.25-4) unstable; urgency=low
+
+  [ Aaron M. Ucko ]
+  * Team upload.
+  * debian/patches/support_other_cpus: belatedly add a descriptive header.
+  * debian/patches/hurd_fixes: new; fix hurd-specific issues.
+    (In conjunction with the following change, finally closes: #629656.)
+  * debian/control:
+    - Build-Depends += libc0.3-dev (>= 2.13-9~) [hurd-i386] to avoid #630180.
+    - Declare both binary packages as Multi-Arch: foreign.
+  * debian/patches/fix_lib_deps: new; ensure that all libraries link against
+    all direct dependencies.  (Break the dependency loop between libxblast
+    and libxalgoblastdbindex by having the former provide only the C++ BLAST
+    API, leaving the C core only in libblast.)  (Closes: #633567.)
+  * debian/rules: tweak LDFLAGS, supplying -Wl,--as-needed across the
+    board (as it is now safe to do so) and adding -Wl,--enable-new-dtags
+    to allow LD_LIBRARY_PATH to override the private rpath.
+  * debian/patches/no_multiarch_rpath: new; avoid redundant rpath entries
+    on multiarch systems (courtesy of overzealous logic to ensure
+    executables will be able to find libstdc++.)
+
+  [ Andreas Tille ]
+  * Enhances: t-coffee (as stated in tasks file)
+
+ -- Aaron M. Ucko <ucko at debian.org>  Sun, 28 Aug 2011 18:45:19 -0400
+
+ncbi-blast+ (2.2.25-3) unstable; urgency=low
+
+  * Team upload.
+  * debian/rules:
+    - Export MAKE to override an internal upstream build script that
+      otherwise incorrectly defaults to gmake on non-Linux
+      architectures. (Really closes: #629656, with any luck.)
+    - Force CONFIG_SHELL=/bin/bash to avoid lossage that can occur with zsh4
+      masquerading as ksh, which configure otherwise favors (due to complaints
+      from users with broken BASH_ENV scripts that change directories).
+
+ -- Aaron M. Ucko <ucko at debian.org>  Thu, 09 Jun 2011 19:25:45 -0400
+
+ncbi-blast+ (2.2.25-2) unstable; urgency=low
+
+  * Team upload.
+  * Fix several sources of build failures (closes: #629656):
+    - debian/rules (override_dh_install): Correctly support building only
+      architecture-dependent packages.
+      (DEB_CONFIGURE_EXTRA_FLAGS): Add --without-caution to override the
+      upstream build system's reluctance to build shared libraries on the
+      Hurd or kFreeBSD, which it doesn't specifically recognize.  Limit C++
+      optimization level to -O (rather than the default -O2) on mips(el),
+      on which g++ otherwise crashes. :-/
+    - debian/patches/support_other_cpus (new; committed upstream too):
+      build correctly on architectures that wound up defining
+      NCBI_SLOW_ATOMIC_SWAP (spuriously in the case of powerpc,
+      whose detection the patch fixes as well).
+
+ -- Aaron M. Ucko <ucko at debian.org>  Wed, 08 Jun 2011 21:42:52 -0400
+
+ncbi-blast+ (2.2.25-1) unstable; urgency=low
+
+  * Initial release (Closes: #624394) 
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr>  Wed, 08 Jun 2011 00:15:15 +0200

Copied: trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/allow_gcc5 (from rev 18785, trunk/packages/ncbi-blast+/trunk/debian/patches/allow_gcc5)
===================================================================
--- trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/allow_gcc5	                        (rev 0)
+++ trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/allow_gcc5	2015-02-17 03:48:14 UTC (rev 18787)
@@ -0,0 +1,47 @@
+Subject: allow compilation with GCC 5
+Description: Formally allow compilation with GCC 5, otherwise okay
+Author: Aaron M. Ucko <ucko at debian.org>
+Forwarded: yes
+Last-Updated: 2015-02-16
+--- a/c++/src/build-system/configure
++++ b/c++/src/build-system/configure
+@@ -5819,14 +5819,10 @@ ncbi_compiler_ver="0"
+ 
+ if test "$GCC" = "yes" ; then
+    compiler_ver="`$real_CXX -dumpversion 2>&1`"
+-   case "$compiler_ver" in
+-     2.95* | 2.96* | 3.* | 4.* )
+-       compiler="GCC"
+-       ncbi_compiler="GCC"
+-       ncbi_compiler_ver="$compiler_ver"
+-                 WithFeatures="$WithFeatures${WithFeaturesSep}GCC"; WithFeaturesSep=" "
+-       ;;
+-   esac
++   compiler="GCC"
++   ncbi_compiler="GCC"
++   ncbi_compiler_ver="$compiler_ver"
++             WithFeatures="$WithFeatures${WithFeaturesSep}GCC"; WithFeaturesSep=" "
+ elif test "$KCC" = "yes" ; then
+    compiler_ver="$kcc_ver"
+    compiler="KCC"
+--- a/c++/src/build-system/configure.ac
++++ b/c++/src/build-system/configure.ac
+@@ -800,14 +800,10 @@ ncbi_compiler_ver="0"
+ 
+ if test "$GCC" = "yes" ; then
+    compiler_ver="`$real_CXX -dumpversion 2>&1`"
+-   case "$compiler_ver" in
+-     2.95* | 2.96* | 3.* | 4.* )
+-       compiler="GCC"
+-       ncbi_compiler="GCC"
+-       ncbi_compiler_ver="$compiler_ver"
+-       NCBI_FEATURE(GCC)
+-       ;;
+-   esac
++   compiler="GCC"
++   ncbi_compiler="GCC"
++   ncbi_compiler_ver="$compiler_ver"
++   NCBI_FEATURE(GCC)
+ elif test "$KCC" = "yes" ; then
+    compiler_ver="$kcc_ver"
+    compiler="KCC"

Deleted: trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/series
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/patches/series	2015-02-17 01:25:18 UTC (rev 18782)
+++ trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/series	2015-02-17 03:48:14 UTC (rev 18787)
@@ -1,9 +0,0 @@
-enable_clean_after_failed_compile
-hurd_fixes
-legacy_rename_rpsblast
-fix_lib_deps
-no_multiarch_rpath
-use_pie_for_apps
-skip_services_unit_test
-fix_configure
-fix_compilation

Copied: trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/series (from rev 18785, trunk/packages/ncbi-blast+/trunk/debian/patches/series)
===================================================================
--- trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/series	                        (rev 0)
+++ trunk/packages/ncbi-blast+/tags/2.2.30-2/debian/patches/series	2015-02-17 03:48:14 UTC (rev 18787)
@@ -0,0 +1,10 @@
+enable_clean_after_failed_compile
+hurd_fixes
+legacy_rename_rpsblast
+fix_lib_deps
+no_multiarch_rpath
+use_pie_for_apps
+skip_services_unit_test
+fix_configure
+fix_compilation
+allow_gcc5




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