[med-svn] [express] 01/02: Add doc-base control file

[Andreas Tille]

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tille pushed a commit to branch master
in repository express.

commit 1085fad9ea4ab428e2d02126ef9f4056e704ee19
Author: Andreas Tille <tille at debian.org>
Date:   Tue Feb 17 11:29:00 2015 +0100

    Add doc-base control file
---
 debian/doc-base | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/debian/doc-base b/debian/doc-base
new file mode 100644
index 0000000..aa0db8d
--- /dev/null
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+Document: express
+Title: doxygen documentation for eXpress
+Author: Adam Roberts, Lior Pachter
+Abstract: Streaming quantification for high-throughput sequencing
+ eXpress is a streaming tool for quantifying the abundances of a set of
+ target sequences from sampled subsequences. Example applications include
+ transcript-level RNA-Seq quantification, allele-specific/haplotype
+ expression analysis (from RNA-Seq), transcription factor binding
+ quantification in ChIP-Seq, and analysis of metagenomic data. It is
+ based on an online-EM algorithm that results in space (memory)
+ requirements proportional to the total size of the target sequences and
+ time requirements that are proportional to the number of sampled
+ fragments. Thus, in applications such as RNA-Seq, eXpress can accurately
+ quantify much larger samples than other currently available tools
+ greatly reducing computing infrastructure requirements. eXpress can be
+ used to build lightweight high-throughput sequencing processing
+ pipelines when coupled with a streaming aligner (such as Bowtie), as
+ output can be piped directly into eXpress, effectively eliminating the
+ need to store read alignments in memory or on disk.
+Section: Science/Biology
+
+Format: pdf
+Files: /usr/share/doc/express/express-doc.pdf.gz

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