[med-svn] [prokka] 05/05: update copyright; new version; no ${shlibs} for Perl refresh manpages; add missing libswiss-perl dependency; fix paths
Michael Crusoe
misterc-guest at moszumanska.debian.org
Sat Feb 21 19:37:10 UTC 2015
This is an automated email from the git hooks/post-receive script.
misterc-guest pushed a commit to branch master
in repository prokka.
commit 2caecb56f0e2c2faffcf1bc70dd6d5c8885a0b78
Author: Michael R. Crusoe <mcrusoe at msu.edu>
Date: Fri Feb 20 18:51:07 2015 -0500
update copyright; new version; no ${shlibs} for Perl refresh manpages; add missing libswiss-perl dependency; fix paths
---
debian/README.Debian | 5 +++++
debian/changelog | 2 +-
debian/control | 8 ++++----
debian/copyright | 30 ++++++++++++++++++++++++++-
debian/createmanpages | 2 +-
debian/patches/set-db-dir | 39 ++++++++++++++++++++++++++++++-----
debian/prokka-biocyc_to_fasta_db.1 | 2 +-
debian/prokka-build_kingdom_dbs.1 | 41 -------------------------------------
debian/prokka-cdd_to_hmm.1 | 2 +-
debian/prokka-clusters_to_hmm.1 | 2 +-
debian/prokka-genbank_to_fasta_db.1 | 2 +-
debian/prokka-genpept_to_fasta_db.1 | 2 +-
debian/prokka-hamap_to_hmm.1 | 2 +-
debian/prokka-make_tarball.1 | 6 ------
debian/prokka-tigrfams_to_hmm.1 | 6 ------
debian/prokka-uniprot_to_fasta_db.1 | 34 +++++++++++++++++++++++++++---
debian/prokka.1 | 2 +-
debian/prokka.install | 9 +++++++-
debian/prokka.manpages | 12 +----------
19 files changed, 121 insertions(+), 87 deletions(-)
diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644
index 0000000..35f4943
--- /dev/null
+++ b/debian/README.Debian
@@ -0,0 +1,5 @@
+Prokka's databases are installed to /usr/share/prokka
+
+HAMAP.hmm is 224M, took 21 hours and 10 minutes, 15M of memory, single threaded?
+
+Shipped HAMAP.hmm is 88M ??
diff --git a/debian/changelog b/debian/changelog
index e9f719e..b497e06 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-prokka (1.10+dfsg-1) UNRELEASED; urgency=low
+prokka (1.11+dfsg-1) UNRELEASED; urgency=low
* Initial release (Closes: #778246)
diff --git a/debian/control b/debian/control
index 1b2fb26..031b40c 100644
--- a/debian/control
+++ b/debian/control
@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Michael R. Crusoe <mcrusoe at msu.edu>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 9)
+Build-Depends: debhelper (>= 9), libswiss-perl
Standards-Version: 3.9.6
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/<pkg>/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/<pkg>/trunk/
@@ -11,8 +11,7 @@ Homepage: http://www.vicbioinformatics.com/software.prokka.shtml
Package: prokka
Architecture: all
-Depends: ${shlibs:Depends},
- ${misc:Depends},
+Depends: ${misc:Depends},
${perl:Depends},
parallel,
libbio-perl-perl,
@@ -21,7 +20,8 @@ Depends: ${shlibs:Depends},
aragorn,
prodigal,
ncbi-tools-bin,
- infernal
+ infernal,
+ libswiss-perl
Description: rapid annotation of prokaryotic genomes
A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a
quad-core computer, and scales well to 32 core SMP systems. It produces GFF3,
diff --git a/debian/copyright b/debian/copyright
index f1cc96b..2fecd2a 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -3,9 +3,22 @@ Upstream-Name: Prokka
Source: http://www.vicbioinformatics.com/prokka-1.10.tar.gz
Files-Excluded: binaries/*
-Files: db/hmm/HAMAP.hmm
+Files: db/hmm
+ db/kingdom
Copyright: UniProtKB/Swiss-Prot is copyrighted by the UniProt Consortium
License: CC-BY-ND-3
+Comment: Email from upstream author:
+ From: Torsten Seemann <torsten.seemann at monash.edu>
+ Date: Sat, 14 Feb 2015 14:45:55 +1100
+ Message-ID: <CAFrpSegC=noX+M-i-QXJvde-pECpy4uCPP8PQy5qHgHbu3PjaQ at mail.gmail.com>
+ Subject: Re: Prokka Debian package?
+ To: "Michael R. Crusoe" <mcrusoe at msu.edu>
+ [...]
+ > ./db/kingdom/Archaea/sprot
+ > ./db/kingdom/Bacteria/sprot
+ > ./db/kingdom/Mitochondria/sprot
+ > ./db/kingdom/Viruses/sprot
+ These 3 are derived from UniProt.
Files: db/hmm/Pfam.hmm
Copyright: © 1996-2011 The Pfam consortium
@@ -16,6 +29,21 @@ Copyright: Wellcome Trust Sanger Institute
License: CC0-1
Comment: Rfam
+Files: db/hmm/CLUSTERS.hmm
+Copyright: Public Domain, US Federal Government work
+License: public-domain
+ From upstream author:
+ Source: http://www.ncbi.nlm.nih.gov/proteinclusters
+ NCBI has now abandoned it.
+ I took the clusters, made MSAs, then made HMMs from those!
+ .
+ From: http://www.ncbi.nlm.nih.gov/About/disclaimer.html
+ Information that is created by or for the US government on this site is within
+ the public domain. Public domain information on the National Library of
+ Medicine (NLM) Web pages may be freely distributed and copied. However, it is
+ requested that in any subsequent use of this work, NLM be given appropriate
+ acknowledgment.
+
Files: bin/*
Copyright: Copyright (C) 2012- Torsten Seemann
License: GPL-3+
diff --git a/debian/createmanpages b/debian/createmanpages
index 4449b24..2f24583 100755
--- a/debian/createmanpages
+++ b/debian/createmanpages
@@ -6,7 +6,7 @@ VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*:
export PATH=${PATH}:bin
-for program in `ls bin`
+for program in `ls bin/prokka{,-bio*,-c*,-g*,-h*,-u*}`
do
help2man --no-info --no-discard-stderr \
--name='rapid annotation of prokaryotic genomes' \
diff --git a/debian/patches/set-db-dir b/debian/patches/set-db-dir
index 09446ae..e811f41 100644
--- a/debian/patches/set-db-dir
+++ b/debian/patches/set-db-dir
@@ -1,11 +1,40 @@
---- prokka.orig/bin/prokka
-+++ prokka/bin/prokka
-@@ -44,7 +44,7 @@
- my $VERSION = "1.10";
+Description: Use a FHS path to the databases, not a relative path that would
+ be non FHS compliant when the prokka script is installed to /usr/bin/
+Forwarded: not-needed
+Author: Michael R. Crusoe <mcrusoe at msu.edu>
+Last-Update: 2015-02-21
+
+---
+
+--- a/bin/prokka
++++ b/bin/prokka
+@@ -45,7 +45,7 @@
+ my $VERSION = "1.11";
my $AUTHOR = 'Torsten Seemann <torsten.seemann at monash.edu>';
my $URL = 'http://www.vicbioinformatics.com';
-my $DBDIR = "$FindBin::RealBin/../db";
+my $DBDIR = "/usr/share/prokka/db";
my $HYPO = 'hypothetical protein';
my $UNANN = 'unannotated protein';
- my $MAXCONTIGIDLEN = 38; # Genbank rule
+ my $MAXCONTIGIDLEN = 20; # Genbank rule
+
+--- a/bin/prokka-build_kingdom_dbs
++++ b/bin/prokka-build_kingdom_dbs
+@@ -3,7 +3,7 @@
+ URL="ftp://ftp.ebi.edu.au/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/"
+
+ # where to put formatted database: /path/to/prokka/db/
+-ROOTDIR=$(dirname $0)
++ROOTDIR=/usr/share/prokka/db
+
+ echo "*** NOTICE ***"
+ echo "This script is about to download data from the Internet and overwrite your existing Prokka BLAST databases."
+@@ -27,7 +27,7 @@
+
+ wget -q -O - "$DAT" | \
+ gunzip | \
+- "$ROOTDIR/prokka-uniprot_to_fasta_db" | \
++ prokka-uniprot_to_fasta_db | \
+ makeblastdb -in - -dbtype prot -title "Prokka $K" -hash_index -out "$DIR/sprot"
+
+ # If you want to use old BLAST:
diff --git a/debian/prokka-biocyc_to_fasta_db.1 b/debian/prokka-biocyc_to_fasta_db.1
index 158f77e..8086300 100644
--- a/debian/prokka-biocyc_to_fasta_db.1
+++ b/debian/prokka-biocyc_to_fasta_db.1
@@ -1,5 +1,5 @@
.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA-BIOCYC_TO_FASTA_DB "1" "February 2015" "prokka-biocyc_to_fasta_db 1.10" "User Commands"
+.TH PROKKA-BIOCYC_TO_FASTA_DB "1" "February 2015" "prokka-biocyc_to_fasta_db 1.11" "User Commands"
.SH NAME
prokka-biocyc_to_fasta_db \- rapid annotation of prokaryotic genomes
.SH SYNOPSIS
diff --git a/debian/prokka-build_kingdom_dbs.1 b/debian/prokka-build_kingdom_dbs.1
deleted file mode 100644
index e551dda..0000000
--- a/debian/prokka-build_kingdom_dbs.1
+++ /dev/null
@@ -1,41 +0,0 @@
-.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA-BUILD_KINGDOM_DBS "1" "February 2015" "prokka-build_kingdom_dbs 1.10" "User Commands"
-.SH NAME
-prokka-build_kingdom_dbs \- rapid annotation of prokaryotic genomes
-.SH DESCRIPTION
-*** NOTICE ***
-This script is about to download data from the Internet and overwrite your existing Prokka BLAST databases.
-(press CTRL\-C within 5 seconds to abort!)
-Downloading ftp://ftp.ebi.edu.au/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions//uniprot_sprot_viruses.dat.gz and installing in bin/../db/kingdom/Viruses
-Can't locate SWISS/Entry.pm in @INC (you may need to install the SWISS::Entry module) (@INC contains: \fI/home/mcrusoe/perl5/lib/perl5/x86_64\-linux\-gnu\-thread\-multi\fP /home/mcrusoe/perl5/lib/perl5 /home/mcrusoe/src/biopieces//code_perl \fI/etc/perl\fP /usr/local/lib/perl/5.18.2 \fI/usr/local/share/perl/5.18.2\fP /usr/lib/perl5 \fI/usr/share/perl5\fP /usr/lib/perl/5.18 \fI/usr/share/perl/5.18\fP /usr/local/lib/site_perl .) at bin/prokka\-uniprot_to_fasta_db line 3.
-BEGIN failed\-\-compilation aborted at bin/prokka\-uniprot_to_fasta_db line 3.
-.PP
-Building a new DB, current time: 02/12/2015 12:23:23
-New DB name: bin/../db/kingdom/Viruses/sprot
-New DB title: Prokka Viruses
-Sequence type: Protein
-Keep Linkouts: T
-Keep MBits: T
-Maximum file size: 1000000000B
-Downloading ftp://ftp.ebi.edu.au/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions//uniprot_sprot_archaea.dat.gz and installing in bin/../db/kingdom/Archaea
-Can't locate SWISS/Entry.pm in @INC (you may need to install the SWISS::Entry module) (@INC contains: \fI/home/mcrusoe/perl5/lib/perl5/x86_64\-linux\-gnu\-thread\-multi\fP /home/mcrusoe/perl5/lib/perl5 /home/mcrusoe/src/biopieces//code_perl \fI/etc/perl\fP /usr/local/lib/perl/5.18.2 \fI/usr/local/share/perl/5.18.2\fP /usr/lib/perl5 \fI/usr/share/perl5\fP /usr/lib/perl/5.18 \fI/usr/share/perl/5.18\fP /usr/local/lib/site_perl .) at bin/prokka\-uniprot_to_fasta_db line 3.
-BEGIN failed\-\-compilation aborted at bin/prokka\-uniprot_to_fasta_db line 3.
-.PP
-Building a new DB, current time: 02/12/2015 12:23:27
-New DB name: bin/../db/kingdom/Archaea/sprot
-New DB title: Prokka Archaea
-Sequence type: Protein
-Keep Linkouts: T
-Keep MBits: T
-Maximum file size: 1000000000B
-Downloading ftp://ftp.ebi.edu.au/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions//uniprot_sprot_bacteria.dat.gz and installing in bin/../db/kingdom/Bacteria
-Can't locate SWISS/Entry.pm in @INC (you may need to install the SWISS::Entry module) (@INC contains: \fI/home/mcrusoe/perl5/lib/perl5/x86_64\-linux\-gnu\-thread\-multi\fP /home/mcrusoe/perl5/lib/perl5 /home/mcrusoe/src/biopieces//code_perl \fI/etc/perl\fP /usr/local/lib/perl/5.18.2 \fI/usr/local/share/perl/5.18.2\fP /usr/lib/perl5 \fI/usr/share/perl5\fP /usr/lib/perl/5.18 \fI/usr/share/perl/5.18\fP /usr/local/lib/site_perl .) at bin/prokka\-uniprot_to_fasta_db line 3.
-BEGIN failed\-\-compilation aborted at bin/prokka\-uniprot_to_fasta_db line 3.
-.PP
-Building a new DB, current time: 02/12/2015 12:23:31
-New DB name: bin/../db/kingdom/Bacteria/sprot
-New DB title: Prokka Bacteria
-Sequence type: Protein
-Keep Linkouts: T
-Keep MBits: T
-Maximum file size: 1000000000B
diff --git a/debian/prokka-cdd_to_hmm.1 b/debian/prokka-cdd_to_hmm.1
index b972f9d..fa43773 100644
--- a/debian/prokka-cdd_to_hmm.1
+++ b/debian/prokka-cdd_to_hmm.1
@@ -1,5 +1,5 @@
.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA-CDD_TO_HMM "1" "February 2015" "prokka-cdd_to_hmm 1.10" "User Commands"
+.TH PROKKA-CDD_TO_HMM "1" "February 2015" "prokka-cdd_to_hmm 1.11" "User Commands"
.SH NAME
prokka-cdd_to_hmm \- rapid annotation of prokaryotic genomes
.SH SYNOPSIS
diff --git a/debian/prokka-clusters_to_hmm.1 b/debian/prokka-clusters_to_hmm.1
index a49aef1..8f852ca 100644
--- a/debian/prokka-clusters_to_hmm.1
+++ b/debian/prokka-clusters_to_hmm.1
@@ -1,5 +1,5 @@
.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA-CLUSTERS_TO_HMM "1" "February 2015" "prokka-clusters_to_hmm 1.10" "User Commands"
+.TH PROKKA-CLUSTERS_TO_HMM "1" "February 2015" "prokka-clusters_to_hmm 1.11" "User Commands"
.SH NAME
prokka-clusters_to_hmm \- rapid annotation of prokaryotic genomes
.SH SYNOPSIS
diff --git a/debian/prokka-genbank_to_fasta_db.1 b/debian/prokka-genbank_to_fasta_db.1
index 3068fe0..3878818 100644
--- a/debian/prokka-genbank_to_fasta_db.1
+++ b/debian/prokka-genbank_to_fasta_db.1
@@ -1,5 +1,5 @@
.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA-GENBANK_TO_FASTA_DB "1" "February 2015" "prokka-genbank_to_fasta_db 1.10" "User Commands"
+.TH PROKKA-GENBANK_TO_FASTA_DB "1" "February 2015" "prokka-genbank_to_fasta_db 1.11" "User Commands"
.SH NAME
prokka-genbank_to_fasta_db \- rapid annotation of prokaryotic genomes
.SH SYNOPSIS
diff --git a/debian/prokka-genpept_to_fasta_db.1 b/debian/prokka-genpept_to_fasta_db.1
index 58b787b..b22708f 100644
--- a/debian/prokka-genpept_to_fasta_db.1
+++ b/debian/prokka-genpept_to_fasta_db.1
@@ -1,5 +1,5 @@
.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA-GENPEPT_TO_FASTA_DB "1" "February 2015" "prokka-genpept_to_fasta_db 1.10" "User Commands"
+.TH PROKKA-GENPEPT_TO_FASTA_DB "1" "February 2015" "prokka-genpept_to_fasta_db 1.11" "User Commands"
.SH NAME
prokka-genpept_to_fasta_db \- rapid annotation of prokaryotic genomes
.SH SYNOPSIS
diff --git a/debian/prokka-hamap_to_hmm.1 b/debian/prokka-hamap_to_hmm.1
index 6049509..6878413 100644
--- a/debian/prokka-hamap_to_hmm.1
+++ b/debian/prokka-hamap_to_hmm.1
@@ -1,5 +1,5 @@
.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA-HAMAP_TO_HMM "1" "February 2015" "prokka-hamap_to_hmm 1.10" "User Commands"
+.TH PROKKA-HAMAP_TO_HMM "1" "February 2015" "prokka-hamap_to_hmm 1.11" "User Commands"
.SH NAME
prokka-hamap_to_hmm \- rapid annotation of prokaryotic genomes
.SH SYNOPSIS
diff --git a/debian/prokka-make_tarball.1 b/debian/prokka-make_tarball.1
deleted file mode 100644
index b3bfe14..0000000
--- a/debian/prokka-make_tarball.1
+++ /dev/null
@@ -1,6 +0,0 @@
-.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA-MAKE_TARBALL "1" "February 2015" "prokka-make_tarball 1.10" "User Commands"
-.SH NAME
-prokka-make_tarball \- rapid annotation of prokaryotic genomes
-.SH DESCRIPTION
-Please run this script from the bin/ folder of the Prokka folder.
diff --git a/debian/prokka-tigrfams_to_hmm.1 b/debian/prokka-tigrfams_to_hmm.1
deleted file mode 100644
index c55ea4f..0000000
--- a/debian/prokka-tigrfams_to_hmm.1
+++ /dev/null
@@ -1,6 +0,0 @@
-.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA-TIGRFAMS_TO_HMM "1" "February 2015" "prokka-tigrfams_to_hmm 1.10" "User Commands"
-.SH NAME
-prokka-tigrfams_to_hmm \- rapid annotation of prokaryotic genomes
-.SH DESCRIPTION
-Can't open \fB\-\-help\fR: No such file or directory at bin/prokka\-tigrfams_to_hmm line 23.
diff --git a/debian/prokka-uniprot_to_fasta_db.1 b/debian/prokka-uniprot_to_fasta_db.1
index fa46814..5b45a57 100644
--- a/debian/prokka-uniprot_to_fasta_db.1
+++ b/debian/prokka-uniprot_to_fasta_db.1
@@ -1,7 +1,35 @@
.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA-UNIPROT_TO_FASTA_DB "1" "February 2015" "prokka-uniprot_to_fasta_db 1.10" "User Commands"
+.TH PROKKA-UNIPROT_TO_FASTA_DB "1" "February 2015" "prokka-uniprot_to_fasta_db 1.11" "User Commands"
.SH NAME
prokka-uniprot_to_fasta_db \- rapid annotation of prokaryotic genomes
+.SH SYNOPSIS
+.B prokka-uniprot_to_fasta_db
+[\fIoptions\fR] \fI<uniprot.dat>\fR
.SH DESCRIPTION
-Can't locate SWISS/Entry.pm in @INC (you may need to install the SWISS::Entry module) (@INC contains: \fI/home/mcrusoe/perl5/lib/perl5/x86_64\-linux\-gnu\-thread\-multi\fP /home/mcrusoe/perl5/lib/perl5 /home/mcrusoe/src/biopieces//code_perl \fI/etc/perl\fP /usr/local/lib/perl/5.18.2 \fI/usr/local/share/perl/5.18.2\fP /usr/lib/perl5 \fI/usr/share/perl5\fP /usr/lib/perl/5.18 \fI/usr/share/perl/5.18\fP /usr/local/lib/site_perl .) at bin/prokka\-uniprot_to_fasta_db line 3.
-BEGIN failed\-\-compilation aborted at bin/prokka\-uniprot_to_fasta_db line 3.
+.TP
+\fB\-\-help\fR
+This help.
+.TP
+\fB\-\-verbose\fR!
+Verbose output (default '0').
+.TP
+\fB\-\-separator\fR=\fIs\fR
+Separator for gene/EC/product (default '~~~').
+.TP
+\fB\-\-blank\fR=\fIs\fR
+Replace empty gene/EC/product with this (default '').
+.TP
+\fB\-\-evidence\fR=\fIi\fR
+1=prot 2=mrna 3=homol 4=pred 5=unsure (default '2').
+.TP
+\fB\-\-fragments\fR!
+Include 'DE Flags: Fragment;' entries (default '0').
+.TP
+\fB\-\-minlen\fR=\fIi\fR
+Minimum peptide length (default '20').
+.TP
+\fB\-\-term\fR=\fIs\fR
+Lineage must contain this term eg. 'Bacteria' (default '').
+.TP
+\fB\-\-hypo\fR!
+Don't filter out hypothetical proteins (default '0').
diff --git a/debian/prokka.1 b/debian/prokka.1
index 95826bd..fe247cc 100644
--- a/debian/prokka.1
+++ b/debian/prokka.1
@@ -1,5 +1,5 @@
.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.44.1.
-.TH PROKKA "1" "February 2015" "prokka 1.10" "User Commands"
+.TH PROKKA "1" "February 2015" "prokka 1.11" "User Commands"
.SH NAME
prokka \- rapid annotation of prokaryotic genomes
.SH DESCRIPTION
diff --git a/debian/prokka.install b/debian/prokka.install
index f0715cf..e22babc 100644
--- a/debian/prokka.install
+++ b/debian/prokka.install
@@ -1,2 +1,9 @@
db/* /usr/share/prokka/db/
-bin/* /usr/bin/
+bin/prokka /usr/bin/
+bin/prokka-biocyc_to_fasta_db /usr/bin/
+bin/prokka-cdd_to_hmm /usr/bin/
+bin/prokka-clusters_to_hmm /usr/bin/
+bin/prokka-genbank_to_fasta_db /usr/bin/
+bin/prokka-genpept_to_fasta_db /usr/bin/
+bin/prokka-hamap_to_hmm /usr/bin/
+bin/prokka-uniprot_to_fasta_db
diff --git a/debian/prokka.manpages b/debian/prokka.manpages
index baef91a..0f65186 100644
--- a/debian/prokka.manpages
+++ b/debian/prokka.manpages
@@ -1,11 +1 @@
-debian/prokka.1
-debian/prokka-biocyc_to_fasta_db.1
-debian/prokka-build_kingdom_dbs.1
-debian/prokka-cdd_to_hmm.1
-debian/prokka-clusters_to_hmm.1
-debian/prokka-genbank_to_fasta_db.1
-debian/prokka-genpept_to_fasta_db.1
-debian/prokka-hamap_to_hmm.1
-debian/prokka-make_tarball.1
-debian/prokka-tigrfams_to_hmm.1
-debian/prokka-uniprot_to_fasta_db.1
+debian/*.1
--
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