[med-svn] r19635 - in trunk/packages/R/r-bioc-variantannotation/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2015-07-17 21:29:44 +0000 (Fri, 17 Jul 2015)
New Revision: 19635

Modified:
   trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog
   trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/drop_tests_requiring_large_data_sets.patch
Log:
New upstream version


Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog	2015-07-17 21:18:13 UTC (rev 19634)
+++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog	2015-07-17 21:29:44 UTC (rev 19635)
@@ -1,3 +1,9 @@
+r-bioc-variantannotation (1.14.6-1) unstable; urgency=medium
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Fri, 17 Jul 2015 23:24:42 +0200
+
 r-bioc-variantannotation (1.14.4-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/drop_tests_requiring_large_data_sets.patch
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/drop_tests_requiring_large_data_sets.patch	2015-07-17 21:18:13 UTC (rev 19634)
+++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/drop_tests_requiring_large_data_sets.patch	2015-07-17 21:29:44 UTC (rev 19635)
@@ -205,7 +205,7 @@
 -}
 --- a/inst/unitTests/test_predictCoding-methods.R
 +++ /dev/null
-@@ -1,110 +0,0 @@
+@@ -1,111 +0,0 @@
 -quiet <- suppressWarnings
 -library(BSgenome.Hsapiens.UCSC.hg19)
 -fun <- VariantAnnotation:::.predictCodingGRangesList
@@ -248,7 +248,8 @@
 -    query <- GRanges("chr1", IRanges(rep(10101, 2), width=c(2,3)), 
 -                     variant=variant)
 -    current <- quiet(fun(query, cdsbytx[1:2], Hsapiens, variant))
--    checkIdentical(as.character(mcols(current)$VARCODON), c("", "TTCCGG"))
+-    checkIdentical(as.character(mcols(current)$VARCODON), 
+-                   c("TATCCGG", "TTCCGG"))
 -}
 -
 -test_mapToTranscripts <- function()