[med-svn] r18945 - trunk/packages/rdp-readseq/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-03-10 16:23:25 +0000 (Tue, 10 Mar 2015)
New Revision: 18945

Added:
   trunk/packages/rdp-readseq/trunk/debian/manpages
   trunk/packages/rdp-readseq/trunk/debian/rdp-readseq.1
Modified:
   trunk/packages/rdp-readseq/trunk/debian/control
Log:
Add manpage and upload to new


Modified: trunk/packages/rdp-readseq/trunk/debian/control
===================================================================
--- trunk/packages/rdp-readseq/trunk/debian/control	2015-03-10 16:01:09 UTC (rev 18944)
+++ trunk/packages/rdp-readseq/trunk/debian/control	2015-03-10 16:23:25 UTC (rev 18945)
@@ -25,10 +25,10 @@
          ${misc:Depends},
          ${java:Depends}
 Description: Ribosomal Database Project (RDP) sequence reading and writing
- Sequence reading library developed by the Ribosomal Database Project.  Can
- handle genbank, embl, fasta, fastq, sff and sto files.  Can read from files
- or streams, and can handle indexing files.
+ Rdp-readseq is a simple user interface to the sequence reading library
+ developed by the Ribosomal Database Project.  It can handle genbank, embl,
+ fasta, fastq, sff and sto files.  It can read from files or streams, and
+ can handle indexing files.
  .
- A basic rdp-readseq command line program is also included.
- .
- The ReadSeq project is a library used by other RDP tools.
+ The package also contains the ReadSeq Java library which is used by other
+ RDP tools.

Added: trunk/packages/rdp-readseq/trunk/debian/manpages
===================================================================
--- trunk/packages/rdp-readseq/trunk/debian/manpages	                        (rev 0)
+++ trunk/packages/rdp-readseq/trunk/debian/manpages	2015-03-10 16:23:25 UTC (rev 18945)
@@ -0,0 +1,2 @@
+debian/*.1
+

Added: trunk/packages/rdp-readseq/trunk/debian/rdp-readseq.1
===================================================================
--- trunk/packages/rdp-readseq/trunk/debian/rdp-readseq.1	                        (rev 0)
+++ trunk/packages/rdp-readseq/trunk/debian/rdp-readseq.1	2015-03-10 16:23:25 UTC (rev 18945)
@@ -0,0 +1,37 @@
+.TH RDP-READSEQ "1" "March 2015" "RDP Library" "User Commands"
+.SH NAME
+rdp-readseq: \- Ribosomal Database Project (RDP) sequence reading and writing
+.SH SYNOPSIS
+.B rdp-readseq
+\fI<subcommand> <subcommand args ...>\fR
+.SH DESCRIPTION
+\fBrdp-readseq\fR is a simple user interface to the
+sequence reading library developed by the Ribosomal Database Project.  It can
+handle genbank, embl, fasta, fastq, sff and sto files.  It can read from files
+or streams, and can handle indexing files.
+.SH OPTIONS
+List of \fIsubcommands\fR:
+.TP
+random\-sample
+\- random select a subset or subregion of sequences
+.TP
+reverse\-comp
+\- reverse complement sequences
+.TP
+rm\-dupseq
+\- remove identical or substring of sequences
+.TP
+select\-seqs
+\- select or deselect sequences from a file
+.TP
+split
+\- split sequences
+.TP
+to\-fasta
+\- convert to fasta format
+.TP
+to\-fastq
+\- convert to fastq format
+.TP
+to\-stk
+\- convert to stk format