[med-svn] r18961 - trunk/packages/rdp-classifier/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-03-12 08:30:19 +0000 (Thu, 12 Mar 2015)
New Revision: 18961

Modified:
   trunk/packages/rdp-classifier/trunk/debian/rdp_classifier.1
Log:
Remove duplicated entries from manpage


Modified: trunk/packages/rdp-classifier/trunk/debian/rdp_classifier.1
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/rdp_classifier.1	2015-03-12 08:26:44 UTC (rev 18960)
+++ trunk/packages/rdp-classifier/trunk/debian/rdp_classifier.1	2015-03-12 08:30:19 UTC (rev 18961)
@@ -34,35 +34,6 @@
 .TP
 \fB\-w\fR,\-\-minWords <arg>
 minimum number of words for each bootstrap trial, Default is 1/8 of the words. Minimum is 5
-.PP
-usage: ClassifierCmd [\-f <arg>] [\-g <arg>] [\-o <arg>] [\-q <arg>] [\-t <arg>] [\-w <arg>]
-.TP
-\fB\-f\fR,\-\-format <arg>
-all tab delimited output format: [allrank|fixrank|db]. Default is allrank.
-allrank: outputs the results for all ranks applied for each sequence: seqname, orientation,
-taxon name, rank, conf, ...
-fixrank: only outputs the results for fixed ranks in order: domain, phylum, class, order,
-family, genus
-db: outputs the seqname, trainset_no, tax_id, conf. This is good for storing in a database
-.TP
-\fB\-g\fR,\-\-gene <arg>
-16srrna|fungallsu, the default training model for 16S rRNA or Fungal LSU genes. This option
-will be overwritten by \fB\-\-train_propfile\fR option
-.TP
-\fB\-o\fR,\-\-outputFile <arg>
-output file name for classification assignment
-.TP
-\fB\-q\fR,\-\-queryFile <arg>
-query file contains sequences in one of the following formats: Fasta, Genbank and EMBL
-.TP
-\fB\-t\fR,\-\-train_propfile <arg>
-specify a property file contains the mapping of the training files if it's located outside
-of data/classifier/.
-Note: the training files and the property file should be in the same directory.
-The default property file is set to data/classifier/16srrna/rRNAClassifier.properties.
-.TP
-\fB\-w\fR,\-\-minWords <arg>
-minimum number of words for each bootstrap trial, Default is 1/8 of the words. Minimum is 5
 .SH AUTHOR
 This manual page was generated using help2man and polished by
 Andreas Tille <tille at debian.org>, for the Debian project