[med-svn] [bowtie2] branch master updated (0d0c843 -> cca2c6d)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch master
in repository bowtie2.

      from  0d0c843   d/changelog: update timestamp, upload to unstable
       new  a6ae526   Imported Upstream version 2.2.5
       new  4748129   Merge tag 'upstream/2.2.5'
       new  477dbc3   d/changelog: new upstream version d/patches/hardening.patch: refreshed d/filter.pl: strip unnecessary lines from help2man output d/help2man-wrapper: pipe through d/filter.pl
       new  cca2c6d   d/changelog: upload to experimental

The 4 revisions listed above as "new" are entirely new to this
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Summary of changes:
 MANUAL                         |  10 +-
 MANUAL.markdown                | 130 ++++++++++----------------
 Makefile                       |  11 +--
 NEWS                           |  13 ++-
 VERSION                        |   2 +-
 aligner_result.cpp             |  10 +-
 bowtie2                        |  32 +++++--
 bt2_search.cpp                 |   2 +-
 debian/changelog               |   6 ++
 debian/filter.pl               |  15 +++
 debian/help2man-wrapper        |   2 +-
 debian/patches/hardening.patch |   2 +-
 doc/manual.html                | 208 ++++++++++++++++-------------------------
 pat.cpp                        |   8 +-
 14 files changed, 216 insertions(+), 235 deletions(-)
 create mode 100755 debian/filter.pl

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