[med-svn] r18989 - in trunk/packages/mapsembler2/tags: . 2.2.3+dfsg-2/debian
Olivier Sallou
osallou at moszumanska.debian.org
Sun Mar 22 11:19:22 UTC 2015
Author: osallou
Date: 2015-03-22 11:17:41 +0000 (Sun, 22 Mar 2015)
New Revision: 18989
Added:
trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/
trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog
trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control
Removed:
trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog
trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control
Log:
[svn-buildpackage] Tagging mapsembler2 2.2.3+dfsg-2
Deleted: trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog
===================================================================
--- trunk/packages/mapsembler2/trunk/debian/changelog 2015-03-22 09:30:47 UTC (rev 18985)
+++ trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog 2015-03-22 11:17:41 UTC (rev 18989)
@@ -1,62 +0,0 @@
-mapsembler2 (2.2.3+dfsg-2) UNRELEASED; urgency=medium
-
- * Some DEP5 fixes
- * Fix clean target
- Closes: #766791
- * cme fix dpkg-control
-
- -- Andreas Tille <tille at debian.org> Sun, 26 Oct 2014 17:42:21 +0100
-
-mapsembler2 (2.2.3+dfsg-1) unstable; urgency=medium
-
- * New upstream release
- * Fix some compilation issues
- * Fix FTBS on non x86 (Closes: #765285).
-
- -- Olivier Sallou <osallou at debian.org> Fri, 19 Sep 2014 13:41:47 +0200
-
-mapsembler2 (2.2.1+dfsg-3) unstable; urgency=medium
-
- [Gilles Filippini <pini at debian.org> ]
- * Support hdf5 1.8.13 new packaging layout (Closes: #758730).
- * Fix FTBFS due to broken help2man call in debian/rules.
-
- -- Olivier Sallou <osallou at debian.org> Wed, 20 Aug 2014 12:21:26 +0200
-
-mapsembler2 (2.2.1+dfsg-2) unstable; urgency=medium
-
- * Fix kissreads file conflict with discoSnp (Closes: #758648).
-
- -- Olivier Sallou <osallou at debian.org> Tue, 19 Aug 2014 08:53:07 +0200
-
-mapsembler2 (2.2.1+dfsg-1) unstable; urgency=medium
-
- * New upstream release
- Change of license to AGPL-3
-
- -- Olivier Sallou <osallou at debian.org> Thu, 29 May 2014 15:07:28 +0200
-
-mapsembler2 (2.1.2+dfsg-1) unstable; urgency=low
-
- * New upstream release
-
- -- Olivier Sallou <osallou at debian.org> Fri, 21 Feb 2014 15:42:22 +0100
-
-mapsembler2 (2.0.31-1) unstable; urgency=low
-
- * New upstream release
-
- -- Olivier Sallou <osallou at debian.org> Fri, 21 Feb 2014 15:13:29 +0100
-
-mapsembler2 (2.0.5+dfsg-2) unstable; urgency=low
-
- * d/control: Add missing build dep
-
- -- Olivier Sallou <osallou at debian.org> Thu, 06 Feb 2014 08:06:55 +0100
-
-mapsembler2 (2.0.5+dfsg-1) unstable; urgency=medium
-
- * First debian package (Closes: #737099).
-
- -- Olivier Sallou <osallou at debian.org> Sat, 01 Feb 2014 16:55:29 +0100
-
Copied: trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog (from rev 18987, trunk/packages/mapsembler2/trunk/debian/changelog)
===================================================================
--- trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog (rev 0)
+++ trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog 2015-03-22 11:17:41 UTC (rev 18989)
@@ -0,0 +1,65 @@
+mapsembler2 (2.2.3+dfsg-2) UNRELEASED; urgency=medium
+
+ * Some DEP5 fixes
+ * Fix clean target
+ Closes: #766791
+ * cme fix dpkg-control
+ * [O. Sallou] d/control: limit target archs, upstream code uses some code
+ not valid on other archs, could not find an appropriate patch for this
+ (lower #765285 to normal).
+
+ -- Andreas Tille <tille at debian.org> Sun, 26 Oct 2014 17:42:21 +0100
+
+mapsembler2 (2.2.3+dfsg-1) unstable; urgency=medium
+
+ * New upstream release
+ * Fix some compilation issues
+ * Fix FTBS on non x86 (Closes: #765285).
+
+ -- Olivier Sallou <osallou at debian.org> Fri, 19 Sep 2014 13:41:47 +0200
+
+mapsembler2 (2.2.1+dfsg-3) unstable; urgency=medium
+
+ [Gilles Filippini <pini at debian.org> ]
+ * Support hdf5 1.8.13 new packaging layout (Closes: #758730).
+ * Fix FTBFS due to broken help2man call in debian/rules.
+
+ -- Olivier Sallou <osallou at debian.org> Wed, 20 Aug 2014 12:21:26 +0200
+
+mapsembler2 (2.2.1+dfsg-2) unstable; urgency=medium
+
+ * Fix kissreads file conflict with discoSnp (Closes: #758648).
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 19 Aug 2014 08:53:07 +0200
+
+mapsembler2 (2.2.1+dfsg-1) unstable; urgency=medium
+
+ * New upstream release
+ Change of license to AGPL-3
+
+ -- Olivier Sallou <osallou at debian.org> Thu, 29 May 2014 15:07:28 +0200
+
+mapsembler2 (2.1.2+dfsg-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org> Fri, 21 Feb 2014 15:42:22 +0100
+
+mapsembler2 (2.0.31-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org> Fri, 21 Feb 2014 15:13:29 +0100
+
+mapsembler2 (2.0.5+dfsg-2) unstable; urgency=low
+
+ * d/control: Add missing build dep
+
+ -- Olivier Sallou <osallou at debian.org> Thu, 06 Feb 2014 08:06:55 +0100
+
+mapsembler2 (2.0.5+dfsg-1) unstable; urgency=medium
+
+ * First debian package (Closes: #737099).
+
+ -- Olivier Sallou <osallou at debian.org> Sat, 01 Feb 2014 16:55:29 +0100
+
Deleted: trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control
===================================================================
--- trunk/packages/mapsembler2/trunk/debian/control 2015-03-22 09:30:47 UTC (rev 18985)
+++ trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control 2015-03-22 11:17:41 UTC (rev 18989)
@@ -1,43 +0,0 @@
-Source: mapsembler2
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <osallou at debian.org>,
- Andreas Tille <tille at debian.org>
-Section: science
-Priority: optional
-Build-Depends: debhelper (>= 9),
- cmake,
- bc,
- zlib1g-dev,
- help2man,
- libhdf5-dev,
- libcppunit-dev,
- libboost-dev
-Standards-Version: 3.9.6
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/mapsembler2/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/mapsembler2/trunk/
-Homepage: http://colibread.inria.fr/mapsembler2/
-
-Package: mapsembler2
-Architecture: any
-Depends: ${misc:Depends},
- ${shlibs:Depends},
- zlib1g,
- bc
-Description: bioinformatics targeted assembly software
- Mapsembler2 is a targeted assembly software.
- It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not)
- and a set of input sequences (starters).
- .
- It first determines if each starter is read-coherent, e.g. whether reads
- confirm the presence of each starter in the original sequence.
- Then for each read-coherent starter, Mapsembler2 outputs its sequence
- neighborhood as a linear sequence or as a graph, depending on the user choice.
- .
- Mapsembler2 may be used for (not limited to):
- - Validate an assembled sequence (input as starter), e.g. from a de
- Bruijn graph assembly where read-coherence was not enforced.
- - Checks if a gene (input as starter) has an homolog in a set of reads
- - Checks if a known enzyme is present in a metagenomic NGS read set.
- - Enrich unmappable reads by extending them, possibly making them mappable
- - Checks what happens at the extremities of a contig
- - Remove contaminants or symbiont reads from a read set
Copied: trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control (from rev 18987, trunk/packages/mapsembler2/trunk/debian/control)
===================================================================
--- trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control (rev 0)
+++ trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control 2015-03-22 11:17:41 UTC (rev 18989)
@@ -0,0 +1,43 @@
+Source: mapsembler2
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <osallou at debian.org>,
+ Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cmake,
+ bc,
+ zlib1g-dev,
+ help2man,
+ libhdf5-dev,
+ libcppunit-dev,
+ libboost-dev
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/mapsembler2/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/mapsembler2/trunk/
+Homepage: http://colibread.inria.fr/mapsembler2/
+
+Package: mapsembler2
+Architecture: amd64 arm64 armel armhf hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 ppc64el s390x
+Depends: ${misc:Depends},
+ ${shlibs:Depends},
+ zlib1g,
+ bc
+Description: bioinformatics targeted assembly software
+ Mapsembler2 is a targeted assembly software.
+ It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not)
+ and a set of input sequences (starters).
+ .
+ It first determines if each starter is read-coherent, e.g. whether reads
+ confirm the presence of each starter in the original sequence.
+ Then for each read-coherent starter, Mapsembler2 outputs its sequence
+ neighborhood as a linear sequence or as a graph, depending on the user choice.
+ .
+ Mapsembler2 may be used for (not limited to):
+ - Validate an assembled sequence (input as starter), e.g. from a de
+ Bruijn graph assembly where read-coherence was not enforced.
+ - Checks if a gene (input as starter) has an homolog in a set of reads
+ - Checks if a known enzyme is present in a metagenomic NGS read set.
+ - Enrich unmappable reads by extending them, possibly making them mappable
+ - Checks what happens at the extremities of a contig
+ - Remove contaminants or symbiont reads from a read set
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