[med-svn] r19130 - in trunk/packages: . microbegps microbegps/trunk microbegps/trunk/debian microbegps/trunk/debian/source microbegps/trunk/debian/upstream

[Andreas Tille]

Author: tille
Date: 2015-05-04 08:19:09 +0000 (Mon, 04 May 2015)
New Revision: 19130

Added:
   trunk/packages/microbegps/
   trunk/packages/microbegps/trunk/
   trunk/packages/microbegps/trunk/debian/
   trunk/packages/microbegps/trunk/debian/changelog
   trunk/packages/microbegps/trunk/debian/compat
   trunk/packages/microbegps/trunk/debian/control
   trunk/packages/microbegps/trunk/debian/copyright
   trunk/packages/microbegps/trunk/debian/rules
   trunk/packages/microbegps/trunk/debian/source/
   trunk/packages/microbegps/trunk/debian/source/format
   trunk/packages/microbegps/trunk/debian/upstream/
   trunk/packages/microbegps/trunk/debian/upstream/metadata
   trunk/packages/microbegps/trunk/debian/watch
Log:
Inject initial packaging for microbegps


Added: trunk/packages/microbegps/trunk/debian/changelog
===================================================================
--- trunk/packages/microbegps/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/microbegps/trunk/debian/changelog	2015-05-04 08:19:09 UTC (rev 19130)
@@ -0,0 +1,5 @@
+microbegps (1.0.0-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Mon, 04 May 2015 10:18:29 +0200

Added: trunk/packages/microbegps/trunk/debian/compat
===================================================================
--- trunk/packages/microbegps/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/microbegps/trunk/debian/compat	2015-05-04 08:19:09 UTC (rev 19130)
@@ -0,0 +1 @@
+9

Added: trunk/packages/microbegps/trunk/debian/control
===================================================================
--- trunk/packages/microbegps/trunk/debian/control	                        (rev 0)
+++ trunk/packages/microbegps/trunk/debian/control	2015-05-04 08:19:09 UTC (rev 19130)
@@ -0,0 +1,21 @@
+Source: microbegps
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/microbegps/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/microbegps/trunk/
+Homepage: http://sourceforge.net/projects/microbegps/
+
+Package: microbegps
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Explorative Taxonomic Profiling Tool for Metagenomic Data
+ MicrobeGPS is a bioinformatics tool for the analysis of metagenomic
+ sequencing data. The goal is to profile the composition of metagenomic
+ communities as accurately as possible and present the results to the
+ user in a convenient manner. One main focus is reliability: the tool
+ calculates quality metrics for the estimated candidates and allows the
+ user to identify false candidates easily.

Added: trunk/packages/microbegps/trunk/debian/copyright
===================================================================
--- trunk/packages/microbegps/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/microbegps/trunk/debian/copyright	2015-05-04 08:19:09 UTC (rev 19130)
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: <pkg>
+Source: <path_to_download>
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: <license>
+
+Files: debian/*
+Copyright: © 2014 maintainername <maintainer at e.mail>
+License: <license>

Added: trunk/packages/microbegps/trunk/debian/rules
===================================================================
--- trunk/packages/microbegps/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/microbegps/trunk/debian/rules	2015-05-04 08:19:09 UTC (rev 19130)
@@ -0,0 +1,23 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+# some helpful variables - uncomment them if needed
+# shamelessly stolen from http://jmtd.net/log/awk/
+#DEBVERS        := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+#VERSION        := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+#DEBFLAVOR      := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
+#DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+#DEBIAN_BRANCH  := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
+#GIT_TAG        := $(subst ~,_,$(VERSION))
+
+# alternatively to manually set those variables you can
+#  include /usr/share/cdbs/1/rules/buildvars.mk
+# and use what is set there.  Any hint whether dh might set variables in
+# a similar manner are welcome.
+
+%:
+	dh $@
+
+#get-orig-source:
+#	. debian/get-orig-source


Property changes on: trunk/packages/microbegps/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/microbegps/trunk/debian/source/format
===================================================================
--- trunk/packages/microbegps/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/microbegps/trunk/debian/source/format	2015-05-04 08:19:09 UTC (rev 19130)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/microbegps/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/microbegps/trunk/debian/upstream/metadata	                        (rev 0)
+++ trunk/packages/microbegps/trunk/debian/upstream/metadata	2015-05-04 08:19:09 UTC (rev 19130)
@@ -0,0 +1,12 @@
+Reference:
+  Author:  Martin S. Lindner and Bernhard Y. Renard
+  Title: Metagenomic Profiling of Known and Unknown Microbes with MicrobeGPS
+  Journal: PLoS One
+  Year: 2015
+  Volume: 10
+  Number: 2
+  Pages: e0117711
+  DOI: 10.1371/journal.pone.0117711
+  PMID: 25643362
+  URL: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117711
+  eprint: http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0117711&representation=PDF

Added: trunk/packages/microbegps/trunk/debian/watch
===================================================================
--- trunk/packages/microbegps/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/microbegps/trunk/debian/watch	2015-05-04 08:19:09 UTC (rev 19130)
@@ -0,0 +1,3 @@
+version=3
+
+http://sf.net/microbegps/MicrobeGPS-(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))