[med-svn] r19169 - in trunk/packages/R: . r-cran-hexbin r-cran-hexbin/trunk r-cran-hexbin/trunk/debian r-cran-hexbin/trunk/debian/source r-cran-hexbin/trunk/debian/tests

Sat May 9 07:08:21 UTC 2015

Author: tille
Date: 2015-05-09 07:08:21 +0000 (Sat, 09 May 2015)
New Revision: 19169

Added:
   trunk/packages/R/r-cran-hexbin/
   trunk/packages/R/r-cran-hexbin/trunk/
   trunk/packages/R/r-cran-hexbin/trunk/debian/
   trunk/packages/R/r-cran-hexbin/trunk/debian/README.test
   trunk/packages/R/r-cran-hexbin/trunk/debian/changelog
   trunk/packages/R/r-cran-hexbin/trunk/debian/compat
   trunk/packages/R/r-cran-hexbin/trunk/debian/control
   trunk/packages/R/r-cran-hexbin/trunk/debian/copyright
   trunk/packages/R/r-cran-hexbin/trunk/debian/docs
   trunk/packages/R/r-cran-hexbin/trunk/debian/examples
   trunk/packages/R/r-cran-hexbin/trunk/debian/rules
   trunk/packages/R/r-cran-hexbin/trunk/debian/source/
   trunk/packages/R/r-cran-hexbin/trunk/debian/source/format
   trunk/packages/R/r-cran-hexbin/trunk/debian/tests/
   trunk/packages/R/r-cran-hexbin/trunk/debian/tests/control
   trunk/packages/R/r-cran-hexbin/trunk/debian/tests/run-unit-test
   trunk/packages/R/r-cran-hexbin/trunk/debian/watch
Log:
Inject r-cran-hexbin as a precondition for testing r-bioc-snpstats


Added: trunk/packages/R/r-cran-hexbin/trunk/debian/README.test
===================================================================

--- trunk/packages/R/r-cran-hexbin/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/README.test	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+   sh  run-unit-test
+
+in this directory.

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/changelog	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1,5 @@
+r-cran-hexbin (1.27.0-1) UNRELEASED; urgency=medium
+
+  * Initial upload (Closes: #???)
+
+ -- Andreas Tille <tille at debian.org>  Sat, 09 May 2015 08:52:18 +0200

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/compat	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/control	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1,24 @@
+Source: r-cran-hexbin
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               r-base-dev,
+               r-cran-lattice,
+               cdbs
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-hexbin/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-hexbin/
+Homepage: http://cran.r-project.org/web/packages/hexbin
+
+Package: r-cran-hexbin
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${R:Depends},
+         r-cran-lattice
+Description: GNU R hexagonal binning routines
+ This GNU R package contains binning and plotting functions for hexagonal
+ bins. Now uses and relies on grid graphics and formal (S4) classes and
+ methods.

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/copyright	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1,31 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Edzer Pebesma <edzer.pebesma at uni-muenster.de>
+Upstream-Name: hexbin
+Source: http://cran.r-project.org/web/packages/hexbin/
+
+Files: *
+Copyright: 2012-2014 Edzer Pebesma <edzer.pebesma at uni-muenster.de>
+License: GPL-2+
+
+Files: src/*.f
+Copyright: 1991-1994 Dan Carr
+           2004 Nicholas Lewin-Koh and Martin Maechler
+License: GPL-2+
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: GPL-2+
+
+License: GPL-2+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/docs	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1 @@
+debian/README.test

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/examples
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/examples	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/examples	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1 @@
+vignettes

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/rules	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
+
+install/$(package)::
+	find debian/$(package)/ -type f -exec chmod 644 {} +


Property changes on: trunk/packages/R/r-cran-hexbin/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/source/format	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/tests/control	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-survival
+Restrictions: allow-stderr

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/tests/run-unit-test	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/tests/run-unit-test	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1,18 @@
+#!/bin/sh -e
+oname=hexbin
+pkg=r-cran-`echo $oname | tr [A-Z] [a-z]`
+
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
+gunzip *.gz
+for rnw in `ls *.[rR]nw` ; do
+rfile=`echo $rnw | sed 's/\.[rR]nw/.R/'`
+R --no-save <<EOT
+  Stangle("$rnw")
+  source("$rfile", echo=TRUE)
+EOT
+done
+rm -rf *

Added: trunk/packages/R/r-cran-hexbin/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-hexbin/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-hexbin/trunk/debian/watch	2015-05-09 07:08:21 UTC (rev 19169)
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/hexbin_([\d.-]*)\.tar.gz


