[med-svn] [scythe] 02/15: Initial import of the debian config from old repo

[Kevin Murray]

This is an automated email from the git hooks/post-receive script.

daube-guest pushed a commit to branch master
in repository scythe.

commit 7d7575568a3dda27943190ee88fdd707f462f6db
Author: Kevin Murray <spam at kdmurray.id.au>
Date:   Mon Apr 27 15:58:48 2015 +1000

    Initial import of the debian config from old repo
---
 debian/changelog            |  5 +++++
 debian/compat               |  1 +
 debian/control              | 17 +++++++++++++++++
 debian/copyright            | 26 ++++++++++++++++++++++++++
 debian/rules                |  6 ++++++
 debian/scythe.debhelper.log |  2 ++
 debian/scythe.dirs          |  2 ++
 debian/scythe.install       |  2 ++
 debian/source/format        |  1 +
 9 files changed, 62 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..0722e19
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+scythe (0.994-1) UNRELEASED; urgency=medium
+
+  * Initial release. (Closes: #776179)
+
+ -- Kevin Murray <spam at kdmurray.id.au>  Sun, 25 Jan 2015 11:09:57 +1100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..2eb251f
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,17 @@
+Source: scythe
+Maintainer: Kevin Murray <spam at kdmurray.id.au>
+Section: science
+Priority: optional
+Standards-Version: 3.9.6
+Build-Depends: debhelper (>= 9),
+               zlib1g-dev,
+               check
+Homepage: https://github.com/vsbuffalo/scythe
+
+Package: scythe
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Bayesian adaptor trimmer for sequencing reads
+ Scythe uses a Naive Bayesian approach to classify contaminant substrings in
+ sequence reads. It considers quality information, which can make it robust in
+ picking out 3'-end adapters, which often include poor quality bases.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..a814743
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,26 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: scythe
+Source: https://github.com/vsbuffalo/scythe
+
+Files: *
+Copyright: 2011 Vince Buffalo
+License: Expat
+ Permission is hereby granted, free of charge, to any person
+ obtaining a copy of this software and associated documentation
+ files (the "Software"), to deal in the Software without
+ restriction, including without limitation the rights to use, copy,
+ modify, merge, publish, distribute, sublicense, and/or sell copies
+ of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be
+ included in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
+ BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
+ ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ SOFTWARE.
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..0d2168a
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+DPKG_EXPORT_BUILDFLAGS = 1
+include /usr/share/dpkg/buildflags.mk
+
+%:
+	dh $@
diff --git a/debian/scythe.debhelper.log b/debian/scythe.debhelper.log
new file mode 100644
index 0000000..34870e6
--- /dev/null
+++ b/debian/scythe.debhelper.log
@@ -0,0 +1,2 @@
+dh_auto_configure
+dh_auto_build
diff --git a/debian/scythe.dirs b/debian/scythe.dirs
new file mode 100644
index 0000000..e6fdad2
--- /dev/null
+++ b/debian/scythe.dirs
@@ -0,0 +1,2 @@
+usr/bin
+usr/share/doc/scythe
diff --git a/debian/scythe.install b/debian/scythe.install
new file mode 100644
index 0000000..f30077c
--- /dev/null
+++ b/debian/scythe.install
@@ -0,0 +1,2 @@
+scythe usr/bin
+illumina_adapters.fa usr/share/doc/scythe
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/scythe.git