[med-svn] [scythe] 01/01: Remove RONN generation of scythe.1 manpage

[Kevin Murray]

This is an automated email from the git hooks/post-receive script.

daube-guest pushed a commit to branch master
in repository scythe.

commit a81c6001b5e8b551bdb928fc8b611b130bb01709
Author: Kevin Murray <spam at kdmurray.id.au>
Date:   Mon May 11 17:19:32 2015 +1000

    Remove RONN generation of scythe.1 manpage
---
 debian/control       |  1 -
 debian/rules         |  1 -
 debian/scythe.1.ronn | 39 ---------------------------------------
 3 files changed, 41 deletions(-)

diff --git a/debian/control b/debian/control
index 1fbfe01..9b87b18 100644
--- a/debian/control
+++ b/debian/control
@@ -6,7 +6,6 @@ Priority: optional
 Build-Depends: debhelper (>= 9),
                zlib1g-dev,
                python-markdown,
-               ruby-ronn,
                check
 Standards-Version: 3.9.6
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/scythe.git
diff --git a/debian/rules b/debian/rules
index 65aa80d..579ce2b 100755
--- a/debian/rules
+++ b/debian/rules
@@ -7,7 +7,6 @@ include /usr/share/dpkg/buildflags.mk
 
 override_dh_auto_build:
 	dh_auto_build
-	ronn -r --manual=scythe --organization='Vince Buffalo' debian/scythe.1.ronn
 	markdown_py -f README.html README.md
 
 get-orig-source:
diff --git a/debian/scythe.1.ronn b/debian/scythe.1.ronn
deleted file mode 100644
index a0b03cc..0000000
--- a/debian/scythe.1.ronn
+++ /dev/null
@@ -1,39 +0,0 @@
-scythe(1) -- Bayesian adaptor trimmer
-=====================================
-
-
-## SYNOPSIS
-
- scythe -t sanger -a /path/to/adaptors.fasta [options] <sequences.fastq.gz>
-
-
- Trim 3'-end adapter contaminants off sequence files. If no output file
- is specified, scythe will use stdout.
-
-## USAGE
-
-  -p, --prior		prior (default: 0.300)
-  -q, --quality-type	quality type, either illumina, solexa, or sanger (default: sanger)
-  -m, --matches-file	matches file (default: no output)
-  -o, --output-file	output trimmed sequences file (default: stdout)
-  -t, --tag		add a tag to the header indicating Scythe cut a sequence (default: off)
-  -n, --min-match	smallest contaminant to consider (default: 5)
-  -M, --min-keep	filter sequnces less than or equal to this length (default: 35)
-  --quiet		don't output statistics about trimming to stdout (default: off)
-  --help		display this help and exit
-  --version		output version information and exit
-
-  Information on quality schemes:
-  phred			PHRED quality scores (e.g. from Roche 454). ASCII with no offset, range: [4, 60].
-  sanger		Sanger are PHRED ASCII qualities with an offset of 33, range: [0, 93]. From
-			NCBI SRA, or Illumina pipeline 1.8+.
-  solexa		Solexa (also very early Illumina - pipeline < 1.3). ASCII offset of
-	 		64, range: [-5, 62]. Uses a different quality-to-probabilities conversion than other
-			schemes.
-  illumina		Illumina output from pipeline versions between 1.3 and 1.7. ASCII offset of 64,
-			range: [0, 62]
-
-## AUTHOR
-
-Vince Bufflo wrote scythe itself, while Kevin Murray made this man page and the
-Debian package

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/scythe.git