[med-svn] r19228 - in trunk/packages/R: . r-bioc-multtest r-bioc-multtest/trunk r-bioc-multtest/trunk/debian r-bioc-multtest/trunk/debian/source
Andreas Tille
tille at moszumanska.debian.org
Wed May 13 13:24:39 UTC 2015
Author: tille
Date: 2015-05-13 13:24:38 +0000 (Wed, 13 May 2015)
New Revision: 19228
Added:
trunk/packages/R/r-bioc-multtest/
trunk/packages/R/r-bioc-multtest/trunk/
trunk/packages/R/r-bioc-multtest/trunk/debian/
trunk/packages/R/r-bioc-multtest/trunk/debian/changelog
trunk/packages/R/r-bioc-multtest/trunk/debian/compat
trunk/packages/R/r-bioc-multtest/trunk/debian/control
trunk/packages/R/r-bioc-multtest/trunk/debian/copyright
trunk/packages/R/r-bioc-multtest/trunk/debian/rules
trunk/packages/R/r-bioc-multtest/trunk/debian/source/
trunk/packages/R/r-bioc-multtest/trunk/debian/source/format
trunk/packages/R/r-bioc-multtest/trunk/debian/watch
Log:
Add missing dependency for r-cran-apmswapp
Added: trunk/packages/R/r-bioc-multtest/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/changelog (rev 0)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/changelog 2015-05-13 13:24:38 UTC (rev 19228)
@@ -0,0 +1,5 @@
+r-bioc-multtest (2.24.0-1) UNRELEASED; urgency=medium
+
+ * Initial release (closes: #???).
+
+ -- Andreas Tille <tille at debian.org> Wed, 13 May 2015 15:20:31 +0200
Added: trunk/packages/R/r-bioc-multtest/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/compat (rev 0)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/compat 2015-05-13 13:24:38 UTC (rev 19228)
@@ -0,0 +1 @@
+9
Added: trunk/packages/R/r-bioc-multtest/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/control (rev 0)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/control 2015-05-13 13:24:38 UTC (rev 19228)
@@ -0,0 +1,42 @@
+Source: r-bioc-multtest
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev,
+ r-bioc-biobase,
+ r-cran-survival,
+ r-cran-mass
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-multtest/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-multtest/trunk/
+Homepage: http://bioconductor.org/packages/release/bioc/html/multtest.html
+
+Package: r-bioc-multtest
+Architecture: any
+Depends: ${R:Depends},
+ ${misc:Depends},
+ ${shlibs:Depends},
+ r-bioc-biobase,
+ r-cran-survival,
+ r-cran-mass
+Description: Bioconductor resampling-based multiple hypothesis testing
+ Non-parametric bootstrap and permutation resampling-based multiple
+ testing procedures (including empirical Bayes methods) for controlling
+ the family-wise error rate (FWER), generalized family-wise error rate
+ (gFWER), tail probability of the proportion of false positives (TPPFP),
+ and false discovery rate (FDR). Several choices of bootstrap-based null
+ distribution are implemented (centered, centered and scaled,
+ quantile-transformed). Single-step and step-wise methods are available.
+ Tests based on a variety of t- and F-statistics (including t-statistics
+ based on regression parameters from linear and survival models as well
+ as those based on correlation parameters) are included. When probing
+ hypotheses with t-statistics, users may also select a potentially faster
+ null distribution which is multivariate normal with mean zero and
+ variance covariance matrix derived from the vector influence function.
+ Results are reported in terms of adjusted p-values, confidence regions
+ and test statistic cutoffs. The procedures are directly applicable to
+ identifying differentially expressed genes in DNA microarray
+ experiments.
Added: trunk/packages/R/r-bioc-multtest/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/copyright (rev 0)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/copyright 2015-05-13 13:24:38 UTC (rev 19228)
@@ -0,0 +1,27 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: multtest
+Upstream-Contact: Katherine S. Pollard <kpollard at gladstone.ucsf.edu>
+Source: http://bioconductor.org/packages/release/bioc/html/multtest.html
+
+Files: *
+Copyright: © 2006-2015 Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra Taylor, Sandrine Dudoit
+License: LGPL-3+
+
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: LGPL-3+
+
+License: LGPL-3+
+ This program is free software: you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or (at
+ your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Lesser General Public License for more details.
+ .
+ On Debian systems, the complete text of the GNU Lesser General Public
+ License version 3 can be found in ‘/usr/share/common-licenses/LGPL-3’.
Added: trunk/packages/R/r-bioc-multtest/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/rules (rev 0)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/rules 2015-05-13 13:24:38 UTC (rev 19228)
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname=bioc
+include /usr/share/R/debian/r-cran.mk
Property changes on: trunk/packages/R/r-bioc-multtest/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-bioc-multtest/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/source/format (rev 0)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/source/format 2015-05-13 13:24:38 UTC (rev 19228)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-bioc-multtest/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/watch (rev 0)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/watch 2015-05-13 13:24:38 UTC (rev 19228)
@@ -0,0 +1,3 @@
+version=3
+opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
+ http://www.bioconductor.org/packages/release/bioc/html/multtest.html .*/multtest_([\d\.]+)\.tar\.gz
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