[med-svn] [r-cran-phangorn] 02/02: Add debian directory

[Alba Crespi]

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albac-guest pushed a commit to branch master
in repository r-cran-phangorn.

commit e6e0ed5ed8bd81d8a72a17ec113a939b613112b8
Author: Alba Crespi <crespialba+debian at gmail.com>
Date:   Thu May 21 13:57:39 2015 +0100

    Add debian directory
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 27 +++++++++++++++++++++++++++
 debian/copyright     | 28 ++++++++++++++++++++++++++++
 debian/docs          |  2 ++
 debian/files         |  1 +
 debian/rules         |  6 ++++++
 debian/source/format |  1 +
 debian/watch         |  3 +++
 9 files changed, 74 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..81ade41
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-phangorn (1.99-13-1) unstable; urgency=medium
+
+  * Initial release. (Closes: #781592)
+
+ -- Alba Crespi <crespialba+debian at gmail.com>  Thu, 21 May 2015 13:09:52 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..9b5f51a
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,27 @@
+Source: r-cran-phangorn
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Alba Crespi <crespialba+debian at gmail.com>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               r-base-dev (>= 3.0.0),
+               cdbs
+Standards-Version: 3.9.6
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/r-cran-phangorn.git
+Vcs-Git: git://anonscm.debian.org/debian-med/r-cran-phangorn.git
+Homepage: http://cran.r-project.org/web/packages/phangorn/
+
+Package: r-cran-phangorn
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${R:Depends}
+Description: GNU R package for phylogenetic analysis
+ phangorn is a tool for reconstructing phylogenies, using distance-based
+ methods, maximum parsimony or maximum likelihood, and performing Hadamard
+ conjugation. It also offers functions for comparing trees, phylogenetic models
+ or splits, simulating character data and performing congruence analysis.
+ .
+ For more information, see: Schliep K.P. 2011. phangorn: phylogenetic analysis
+ in R. Bioinformatics, 27(4) 592-593.
+
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..d99a854
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,28 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: phangorn
+Source: http://cran.r-project.org/web/packages/phangorn/
+
+Files: *
+Copyright: 2011-2015 Klaus Schliep <klaus.schliep at gmail.com> and Emmanuel Paradis
+License: GPL-2.0+
+
+Files: debian/*
+Copyright: 2015 Alba Crespi <crespialba+debian at gmail.com>
+License: GPL-2.0+
+
+License: GPL-2.0+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..8913f46
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,2 @@
+NEWS
+README.md
diff --git a/debian/files b/debian/files
new file mode 100644
index 0000000..191a7ce
--- /dev/null
+++ b/debian/files
@@ -0,0 +1 @@
+r-cran-phangorn_1.99-13-1_amd64.deb gnu-r optional
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..e5aeb4f
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
+
+DEB_INSTALL_CHANGELOGS_ALL = NEWS
+DEB_INSTALL_DOCS_ALL = -XNEWS
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..627d4ce
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/phangorn_([-0-9\.]*)\.tar\.gz
+

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