[med-svn] r20379 - in trunk/packages/R/r-bioc-snpstats/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2015-11-02 09:54:22 +0000 (Mon, 02 Nov 2015)
New Revision: 20379

Added:
   trunk/packages/R/r-bioc-snpstats/trunk/debian/lintian-overrides
Modified:
   trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog
   trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/use_debian_packaged_zlib.patch
   trunk/packages/R/r-bioc-snpstats/trunk/debian/watch
Log:
New upstream version, lintian override for false positive


Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog	2015-11-02 09:50:02 UTC (rev 20378)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog	2015-11-02 09:54:22 UTC (rev 20379)
@@ -1,3 +1,10 @@
+r-bioc-snpstats (1.20.0+dfsg-1) unstable; urgency=medium
+
+  * New upstream version
+  * lintian override for false positive
+
+ -- Andreas Tille <tille at debian.org>  Mon, 02 Nov 2015 10:10:56 +0100
+
 r-bioc-snpstats (1.18.0+dfsg-1) unstable; urgency=medium
 
   * New upstream version

Added: trunk/packages/R/r-bioc-snpstats/trunk/debian/lintian-overrides
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/lintian-overrides	                        (rev 0)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/lintian-overrides	2015-11-02 09:54:22 UTC (rev 20379)
@@ -0,0 +1,2 @@
+# false positives since the files are identical copies of upstream source tarball
+r-bioc-snpstats: package-contains-timestamped-gzip usr/lib/R/site-library/snpStats/extdata/sample.*

Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/use_debian_packaged_zlib.patch	2015-11-02 09:50:02 UTC (rev 20378)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/patches/use_debian_packaged_zlib.patch	2015-11-02 09:54:22 UTC (rev 20379)
@@ -7,7 +7,7 @@
 --- a/DESCRIPTION
 +++ b/DESCRIPTION
 @@ -6,7 +6,7 @@ Author: David Clayton <dc208 at cam.ac.uk>
- Description: Classes and statistical methods for large SNP association studies, extending the snpMatrix package
+ Description: Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.
  Maintainer: David Clayton <dc208 at cam.ac.uk>
  Depends: R(>= 2.10.0), survival, Matrix, methods
 -Imports: graphics, grDevices, stats, utils, BiocGenerics, zlibbioc

Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/watch	2015-11-02 09:50:02 UTC (rev 20378)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/watch	2015-11-02 09:54:22 UTC (rev 20379)
@@ -1,3 +1,3 @@
 version=3
-opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,downloadurlmangle=s/\.\./packages\/release\/bioc/" \
+opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc?" \
  http://www.bioconductor.org/packages/release/bioc/html/snpStats.html .*/snpStats_([\d\.]+)\.tar\.gz