[med-svn] [fastqc] branch master updated (7b9521e -> fc0a7e1)

[Andreas Tille]

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tille pushed a change to branch master
in repository fastqc.

      from  7b9521e   New Build-Depends: libjhdf5-java
       new  0c37b8f   Imported Upstream version 0.11.4+dfsg
       new  5ab4900   Merge tag 'upstream/0.11.4+dfsg'
       new  fc9383f   New upstream version
       new  fc0a7e1   Add missing Build-Depends ant, explicit location of /usr/share/java/commons-math3.jar

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Configuration/contaminant_list.txt                 |  2 +-
 INSTALL.txt                                        | 26 ++++++++++++-----
 README.txt                                         | 12 ++++----
 RELEASE_NOTES.txt                                  | 33 ++++++++++++++++++++++
 debian/changelog                                   |  6 ++--
 debian/control                                     |  4 +--
 debian/patches/build_xml.patch                     |  3 +-
 debian/patches/fastqc.patch                        |  4 +--
 fastqc                                             | 11 ++++++++
 uk/ac/babraham/FastQC/Analysis/OfflineRunner.java  |  2 +-
 uk/ac/babraham/FastQC/FastQCApplication.java       |  2 +-
 .../babraham/FastQC/Modules/DuplicationLevel.java  |  2 ++
 .../FastQC/Modules/OverRepresentedSeqs.java        |  7 +++++
 .../FastQC/Modules/PerBaseQualityScores.java       | 10 ++++++-
 .../FastQC/Modules/PerTileQualityScores.java       | 10 ++++++-
 .../babraham/FastQC/Report/HTMLReportArchive.java  |  2 ++
 16 files changed, 111 insertions(+), 25 deletions(-)

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