[med-svn] [fastqc] 04/04: Add missing Build-Depends ant, explicit location of /usr/share/java/commons-math3.jar

[Andreas Tille]

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tille pushed a commit to branch master
in repository fastqc.

commit fc0a7e1de212721f2dafab978e86e28a84d4d8aa
Author: Andreas Tille <tille at debian.org>
Date:   Tue Nov 3 15:49:31 2015 +0100

    Add missing Build-Depends ant, explicit location of /usr/share/java/commons-math3.jar
---
 debian/changelog               | 2 +-
 debian/control                 | 4 ++--
 debian/patches/build_xml.patch | 3 ++-
 3 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 3695e80..13cf28b 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,7 +3,7 @@ fastqc (0.11.4+dfsg-1) UNRELEASED; urgency=medium
   * New upstream version
   * cme fix dpkg-control
   * deban/watch: fix version mangling
-  * New Build-Depends: libjhdf5-java
+  * New Build-Depends: ant
 
  -- Andreas Tille <tille at debian.org>  Tue, 03 Nov 2015 14:37:28 +0100
 
diff --git a/debian/control b/debian/control
index b249a21..1e13911 100644
--- a/debian/control
+++ b/debian/control
@@ -8,10 +8,10 @@ Priority: optional
 Build-Depends: debhelper (>= 9),
                javahelper,
                default-jdk,
+               ant,
                libsam-java,
                libjbzip2-java,
-               libcommons-math3-java,
-               libjhdf5-java
+               libcommons-math3-java
 Standards-Version: 3.9.6
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/fastqc.git
 Vcs-Git: git://anonscm.debian.org/debian-med/fastqc.git
diff --git a/debian/patches/build_xml.patch b/debian/patches/build_xml.patch
index 4c9162a..f35b1a2 100644
--- a/debian/patches/build_xml.patch
+++ b/debian/patches/build_xml.patch
@@ -1,6 +1,6 @@
 --- a/build.xml
 +++ b/build.xml
-@@ -11,9 +11,9 @@
+@@ -11,9 +11,10 @@
      <property name="source" value="1.5"/>
      <path id="FastQC.classpath">
          <pathelement location="bin"/>
@@ -10,6 +10,7 @@
 +        <pathelement location="/usr/share/java/jbzip2.jar"/>
 +        <pathelement location="/usr/share/java/sam.jar"/>
 +        <pathelement location="/usr/share/java/jhdf5.jar"/>
++        <pathelement location="/usr/share/java/commons-math3.jar"/>
      </path>
      <target name="init">
          <mkdir dir="bin"/>

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