[med-svn] r20398 - in trunk/packages/R/r-bioc-genomicalignments/tags: . 1.6.1-1
Andreas Tille
tille at moszumanska.debian.org
Fri Nov 6 07:52:37 UTC 2015
Author: tille
Date: 2015-11-06 07:52:36 +0000 (Fri, 06 Nov 2015)
New Revision: 20398
Added:
trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/
trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/changelog
trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/control
trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/watch
Removed:
trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/changelog
trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/control
trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/watch
Log:
Tagged 1.6.1-1
Deleted: trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/changelog
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog 2015-10-30 15:24:37 UTC (rev 20351)
+++ trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/changelog 2015-11-06 07:52:36 UTC (rev 20398)
@@ -1,28 +0,0 @@
-r-bioc-genomicalignments (1.4.1-1) unstable; urgency=medium
-
- * New upstream version
- * Disable patch
- * Citation
- * New versioned dependency r-bioc-rsamtools (>= 1.20.4)
-
- -- Andreas Tille <tille at debian.org> Thu, 25 Jun 2015 23:04:53 +0200
-
-r-bioc-genomicalignments (1.2.0-1) experimental; urgency=medium
-
- * New upstrem version
- * cme fix dpkg-control
- * Adapt to new dependencies
-
- -- Andreas Tille <tille at debian.org> Tue, 21 Oct 2014 06:07:22 +0200
-
-r-bioc-genomicalignments (1.0.6-1) unstable; urgency=medium
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Wed, 17 Sep 2014 11:07:39 +0200
-
-r-bioc-genomicalignments (1.0.2-1) unstable; urgency=medium
-
- * Initial release (closes: #754154)
-
- -- Andreas Tille <tille at debian.org> Tue, 08 Jul 2014 10:55:48 +0200
Copied: trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/changelog (from rev 20374, trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog)
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/changelog (rev 0)
+++ trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/changelog 2015-11-06 07:52:36 UTC (rev 20398)
@@ -0,0 +1,36 @@
+r-bioc-genomicalignments (1.6.1-1) unstable; urgency=medium
+
+ * New upstream version
+ Closes: #803479
+ * Add new (Build-)Depends: r-bioc-summarizedexperiment
+
+ -- Andreas Tille <tille at debian.org> Sat, 31 Oct 2015 19:33:11 +0100
+
+r-bioc-genomicalignments (1.4.1-1) unstable; urgency=medium
+
+ * New upstream version
+ * Disable patch
+ * Citation
+ * New versioned dependency r-bioc-rsamtools (>= 1.20.4)
+
+ -- Andreas Tille <tille at debian.org> Thu, 25 Jun 2015 23:04:53 +0200
+
+r-bioc-genomicalignments (1.2.0-1) experimental; urgency=medium
+
+ * New upstrem version
+ * cme fix dpkg-control
+ * Adapt to new dependencies
+
+ -- Andreas Tille <tille at debian.org> Tue, 21 Oct 2014 06:07:22 +0200
+
+r-bioc-genomicalignments (1.0.6-1) unstable; urgency=medium
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Wed, 17 Sep 2014 11:07:39 +0200
+
+r-bioc-genomicalignments (1.0.2-1) unstable; urgency=medium
+
+ * Initial release (closes: #754154)
+
+ -- Andreas Tille <tille at debian.org> Tue, 08 Jul 2014 10:55:48 +0200
Deleted: trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/control
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/control 2015-10-30 15:24:37 UTC (rev 20351)
+++ trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/control 2015-11-06 07:52:36 UTC (rev 20398)
@@ -1,29 +0,0 @@
-Source: r-bioc-genomicalignments
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>
-Section: gnu-r
-Priority: optional
-Build-Depends: debhelper (>= 9),
- cdbs,
- r-base-dev,
- r-bioc-rsamtools (>= 1.20.4),
- r-bioc-biocparallel (>= 1.0.0)
-Standards-Version: 3.9.6
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-genomicalignments/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-genomicalignments/trunk/
-Homepage: http://bioconductor.org/packages/release/bioc/html/GenomicAlignments.html
-
-Package: r-bioc-genomicalignments
-Architecture: any
-Depends: ${R:Depends},
- ${misc:Depends},
- ${shlibs:Depends},
- r-bioc-rsamtools (>= 1.20.4),
- r-bioc-biocparallel (>= 1.0.0)
-Recommends: r-bioc-shortread
-Description: BioConductor representation and manipulation of short genomic alignments
- This BioConductor package provides efficient containers for storing and
- manipulating short genomic alignments (typically obtained by aligning
- short reads to a reference genome). This includes read counting,
- computing the coverage, junction detection, and working with the
- nucleotide content of the alignments.
Copied: trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/control (from rev 20374, trunk/packages/R/r-bioc-genomicalignments/trunk/debian/control)
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/control (rev 0)
+++ trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/control 2015-11-06 07:52:36 UTC (rev 20398)
@@ -0,0 +1,29 @@
+Source: r-bioc-genomicalignments
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev,
+ r-bioc-rsamtools (>= 1.22.0),
+ r-bioc-summarizedexperiment
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-genomicalignments/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-genomicalignments/trunk/
+Homepage: http://bioconductor.org/packages/release/bioc/html/GenomicAlignments.html
+
+Package: r-bioc-genomicalignments
+Architecture: any
+Depends: ${R:Depends},
+ ${misc:Depends},
+ ${shlibs:Depends},
+ r-bioc-rsamtools (>= 1.22.0),
+ r-bioc-summarizedexperiment
+Recommends: r-bioc-shortread
+Description: BioConductor representation and manipulation of short genomic alignments
+ This BioConductor package provides efficient containers for storing and
+ manipulating short genomic alignments (typically obtained by aligning
+ short reads to a reference genome). This includes read counting,
+ computing the coverage, junction detection, and working with the
+ nucleotide content of the alignments.
Deleted: trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/watch
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/watch 2015-10-30 15:24:37 UTC (rev 20351)
+++ trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/watch 2015-11-06 07:52:36 UTC (rev 20398)
@@ -1,3 +0,0 @@
-version=3
-opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
- http://www.bioconductor.org/packages/release/bioc/html/GenomicAlignments.html .*/GenomicAlignments_([\d\.]+)\.tar\.gz
Copied: trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/watch (from rev 20374, trunk/packages/R/r-bioc-genomicalignments/trunk/debian/watch)
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/watch (rev 0)
+++ trunk/packages/R/r-bioc-genomicalignments/tags/1.6.1-1/watch 2015-11-06 07:52:36 UTC (rev 20398)
@@ -0,0 +1,3 @@
+version=3
+opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \
+ http://www.bioconductor.org/packages/release/bioc/html/GenomicAlignments.html .*/GenomicAlignments_([\d\.]+)\.tar\.gz
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