[med-svn] [artemis] 01/03: Add /usr/bin/bamview and a desktop entry for it

[Afif Elghraoui]

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afif-guest pushed a commit to branch master
in repository artemis.

commit 833dc6aa21d8cd5df932878c51fc8b4ea1eb1050
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Sun Nov 8 12:47:58 2015 -0800

    Add /usr/bin/bamview and a desktop entry for it
    
    I hadn't done this before because the upstream
    distribution did not include a script for bamview.
    The build system, however, generates BamView.jar and
    it is functional, so let's make it more easily
    available to the user.
---
 debian/artemis.links           |  1 +
 debian/desktop/bamview.desktop | 13 +++++++++++++
 debian/man/bamview.1           |  6 ++++++
 3 files changed, 20 insertions(+)

diff --git a/debian/artemis.links b/debian/artemis.links
index 0b4c88f..4726be1 100644
--- a/debian/artemis.links
+++ b/debian/artemis.links
@@ -1,3 +1,4 @@
 usr/share/java/artemis.jar	usr/bin/art
 usr/share/java/act.jar		usr/bin/act
 usr/share/java/DNAPlotter.jar	usr/bin/dnaplotter
+usr/share/java/BamView.jar	usr/bin/bamview
diff --git a/debian/desktop/bamview.desktop b/debian/desktop/bamview.desktop
new file mode 100644
index 0000000..9bfdde5
--- /dev/null
+++ b/debian/desktop/bamview.desktop
@@ -0,0 +1,13 @@
+[Desktop Entry]
+Comment=Visualize Genome-Sequencing Read Alignment Data
+Exec=bamview
+GenericName[en_US]=BamView
+GenericName=BamView
+Icon=helix
+Name[en_US]=BamView
+Name=BamView
+Categories=Science;Biology;DataVisualization;
+StartupNotify=false
+Terminal=false
+Type=Application
+Keywords=genomics
diff --git a/debian/man/bamview.1 b/debian/man/bamview.1
new file mode 100644
index 0000000..3ba9e87
--- /dev/null
+++ b/debian/man/bamview.1
@@ -0,0 +1,6 @@
+.TH BAMVIEW 1 "October 2015"
+.SH NAME
+bamview \- visualizing genome sequencing read alignment stored in BAM files
+.SH SEE ALSO
+.BR art (1),
+.BR act (1)

-- 
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