[med-svn] [gubbins] 01/07: Imported Upstream version 1.4.3

[Andreas Tille]

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tille pushed a commit to branch master
in repository gubbins.

commit be13c99aee93a53b19e17f920afd4b522689a912
Author: Andreas Tille <tille at debian.org>
Date:   Thu Nov 19 11:36:11 2015 +0100

    Imported Upstream version 1.4.3
---
 debian/changelog => CHANGELOG |  0
 ChangeLog                     | 13 -------------
 VERSION                       |  2 +-
 debian/compat                 |  1 -
 debian/control                | 17 -----------------
 debian/copyright              | 31 -------------------------------
 debian/rules                  | 13 -------------
 7 files changed, 1 insertion(+), 76 deletions(-)

diff --git a/debian/changelog b/CHANGELOG
similarity index 100%
rename from debian/changelog
rename to CHANGELOG
diff --git a/ChangeLog b/ChangeLog
deleted file mode 100644
index a677850..0000000
--- a/ChangeLog
+++ /dev/null
@@ -1,13 +0,0 @@
-2012-11-2 Andrew J. Page <ap13 at sanger.ac.uk>
-* Prefilters the initial alignment, ignoring sequences with >25% missing data (the '--filter_percentage' parameter lets you vary this).  
-* SNPs are outputted on a per branch basis in tab format.
-* The stats are now on a per branch basis rather than cumulatively built up from walking the tree.
-* Node labelling in the recombination tab file now consistent with the tree internal node labels
-
-2012-8-7 Andrew J. Page <ap13 at sanger.ac.uk>
-* Cleanup intermediate files by default
-* Fix RF distance calculation and comparison
-
-2012-4-24 Andrew J. Page <ap13 at sanger.ac.uk>
-* Initial beta testing version
-
diff --git a/VERSION b/VERSION
index 9df886c..428b770 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-1.4.2
+1.4.3
diff --git a/debian/compat b/debian/compat
deleted file mode 100644
index ec63514..0000000
--- a/debian/compat
+++ /dev/null
@@ -1 +0,0 @@
-9
diff --git a/debian/control b/debian/control
deleted file mode 100644
index 2e0036c..0000000
--- a/debian/control
+++ /dev/null
@@ -1,17 +0,0 @@
-Source: gubbins
-Section: misc
-Priority: extra
-Maintainer: Aidan Delaney <a.j.delaney at brighton.ac.uk>
-# fastml, fasttree and raxml are required for the build in order to run the gubbins system tests.
-# There are a lot of build dependencies in order to run the system tests.
-Build-Depends: fastml2, fasttree, raxml, debhelper (>= 8.0.0), autotools-dev, python-setuptools, zlib1g-dev, check, python-biopython, python-reportlab, python-nose, pkg-config
-Standards-Version: 3.9.4
-Vcs-Git: https://github.com/andrewjpage/gubbins.git
-Vcs-Browser: https://github.com/andrewjpage/gubbins
-
-Package: gubbins
-Architecture: amd64
-Recommends: raxml
-Depends: fastml2, fasttree, python-biopython, python-reportlab, python-nose, ${shlibs:Depends}, ${misc:Depends}
-Description: Phylogenetic analysis of genome sequences
-  Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
diff --git a/debian/copyright b/debian/copyright
deleted file mode 100644
index 9ad8745..0000000
--- a/debian/copyright
+++ /dev/null
@@ -1,31 +0,0 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: gubbins
-Source: https://github.com/sanger-pathogens/gubbins
-
-Files: *
-Copyright: 2012-2014 Nicholas Croucher <n.croucher at imperial.ac.uk>
-           2012-2014 Aidan Delaney <a.j.delaney at brighton.ac.uk>
-           2012-2014 Simon Harris <sh16 at sanger.ac.uk>
-           2012-2014 Andrew J. Page <ap13 at sanger.ac.uk>
-
-License: GPL-2.0+
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
- .
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>
- .
- On Debian systems, the complete text of the GNU General
- Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
-
-# Please also look if there are files or directories which have a
-# different copyright/license attached and list them here.
-# Please avoid to pick license terms that are more restrictive than the
-# packaged work, as it may make Debian's contributions unacceptable upstream.
diff --git a/debian/rules b/debian/rules
deleted file mode 100755
index 312e24d..0000000
--- a/debian/rules
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
-
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
-%:
-	dh $@  --with autotools-dev

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